BibTex RIS Cite

The determination of genetic relationships among someVicia L. Vetch taxa by using ISSR markers

Year 2013, Volume: 6 Issue: 3, 135 - 139, 15.12.2013

Abstract

The genetic relationship among some naturally growing Vicia taxa in Turkey V. sativa subsp. sativa, subsp.nigra subspstenophylla, V. hybrida, V. peregrinaandV. palaestina was assessed by helping ISSR markers. During PCR assays, although 17 primers were tested, only three primers produced informatics amplification yields for all studied taxa. These ISSR primers had considerably high number of polymorphic locus. According to the dendogram obtained from ISSR profiles, all studied taxa were separated into two main clusters; one of them consists of the section Vicia and the other section Cracca. While the section Vicia comprises the subspecies of V. sativa, V. hybridaand V. peregrina, the section Cracca involve in subgroupsof V. cracca and V. palaestina

References

  • Agar, G., Adiguzel, A., Baris, O., Sengul, M., Gulluce, M., Sahin, F., Bayrak, Ö.F. 2006. FAME and RAPD analysis of selected Vicia taxa from eastern Anatolia, Turkey. Ann. Bot. Fennici.43:241-249.
  • Cullings, K.W. 1992. Design and testing of a plant-specific PCR primer for ecological and evolutionary studies. Molecular Ecology.1:233–240.
  • Davis, P.H., Plitmann, U.1970. Vicia L. in Flora of Turkey and the East Aegean Islands.Vol 3, Edinburgh Univ. Press, Edinburgh.
  • Davis, P.H.1988. Flora of Turkey and the East Aegean Islands. Vol 10, Edinburgh Univ. Press. Edinburgh.
  • Doyle, J.J., Doyle J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, Botanical Society of America.19:11–15.
  • Han, Y., Wang, H. 2010. Genetic Diversity and Phylogenetic Relationships of Two Closely Related Northeast China Vicia Species Revealed with RAPD and ISSR Markers. Biochem Genet. 48:385–401.
  • Harlan, J.R.1956. Theory and dynamics of grassland Agriculture.D. Van. Noztrand Co. Inc.,Princeton.
  • Kupicha, F.K.1976. The infrageneric structure of Vicia. Notes from the Royal Botanical Garden of Edinburgh.34:287– 326.
  • Mabberley, D.J. 1997. The plant book. Cambridge Univ. Press,Cambrige.
  • Noorozi, S., Baghizadeh, A., Javaran, M.J. 2009. The genetic diversity of Iranian pistachio (Pistaciavera L.) cultivars revealed by ISSR markers. Biological Diversity and Conservation. 2/2: 50-56
  • Rohlf, F. J. 1998. NTSYSpc numerical taxonomy and multivariate analysis system user guide, Exeter Software, New York, 0-925031-28-3.
  • Seçmen,Ö.,Gemici, Y., Leblebici, E., Görk, G., Bekat, L. 1989. TohumluBitkilersistematiği. Ege Univ. Fen. Fak., Kitaplar Ser.
  • Sica, M., Gamba, G., Montieri, S., Gaudio, L., Aceto S. 2005. ISSR markers show differentiation among Italian populations of Asparagus acutifoliusL. BMC Genetics. 6:17.
  • Soltis, D.E., Collõer, T.G., Edgerton, M.L. 1991. The Heuchera group (Saxifragaceae): Evidence for chloroplast transfer and paraphyly.Amer.J.Bot.78:1091–1112.
  • Terzopoulos, P.J., Bebeli, P.J. 2008. Genetic diversity analysis of Mediterranean faba bean (Vicia faba L.) with ISSR markers. Field Crops Research. 108:39–44.
  • Uysal, T., Özel, E., Bozkurt, M., Ertuğrul, K. 2012. Genetic Diversity in Threatened Populations of the Endemic Species CentaurealycaonicaBoiss. &Heldr. (Asteraceae). Research Journal of Biology. 2(3): 110-116.
  • Vavilov, N.I.1951. The origin, variation, immunity and breeding cultivated plants. Translated by K.Start. Chron. Bot.13:1-366.
  • Venkatachalam, L., Sreedhar, R.V., Bhagyalakshmi, N. 2008. The use of genetic markers for detecting DNA polymorphism, genotype identification and phylogenetic relationships among banana cultivars. Molecular Phylogenetics and Evolution. 47:974–985.
  • Wang, H., Zong, X., Guan,J.,Yang, T., Sun, X., Ma, Y., Redden, R.2012.Genetic diversity and relationship of global faba bean (Vicia fabaL.) germplasm revealed by ISSR markers. Theor. Appl. Genet. 124:789–797.
  • Young, J.P.W., Mutch, L.A., Ashford, D.A., Zézé, A., Mutch, K.E. 2003. The molecular evolution of host specificity in the rhizobium-legume symbiosis. In: Hails R, Godfray HCJ, Beringer J (eds) Genes in the environment. Blackwell, Oxford, pp 245–257
  • Zietkiewicz, E., Rafalski, A., Labuda, D. 1994.Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics.20:176-183.

ISSR markırlarıkullanılarakbazıVicia L. Fiğ taksonlarıarasındakigenetikakrabalıklarınbelirlenmesi

Year 2013, Volume: 6 Issue: 3, 135 - 139, 15.12.2013

Abstract

Bu çalışmada, Türkiye’de doğal olarak yetişen bazı Vicia taksonları V. sativa subsp. sativa, subsp. nigra var. nigra, subsp incisa var. cordata, V. cracca subsp. cracca, subsp gerardii, subsp atroviolacea, subsp stenophylla, V. hybrida, V.peregrina ve V. palaestina arasındaki genetik akrabalıklar ISSR markırları yardımıyla değerlendirilmiştir. PCR denemeleri sırasında, 17 primer test edilmesine rağmen, sadece üç primer çalışılan tüm taksonlar için bilgi verici amplifikasyon ürünleri vermiştir. Seçilen ISSR primerleri tüm taksonlarda oldukça yüksek sayıda polimorfik lokus oluşturmuştur. ISSR bantlarından elde edilen dendrograma göre, incelenen taksonlardan Vicia seksiyonuna ait olanlar ile Cracca seksiyonuna ait olanlar iki alt grup olarak ayrılmıştır. Vicia seksiyonu alt kümesi, V. sativa’nın tür altı taksonları ile V. hybrida ve V. peregrina türlerinden; Cracca seksiyonu alt kümesi ise V. cracca’nın alt türleri ile V. palaestina türünden oluşmaktadır

References

  • Agar, G., Adiguzel, A., Baris, O., Sengul, M., Gulluce, M., Sahin, F., Bayrak, Ö.F. 2006. FAME and RAPD analysis of selected Vicia taxa from eastern Anatolia, Turkey. Ann. Bot. Fennici.43:241-249.
  • Cullings, K.W. 1992. Design and testing of a plant-specific PCR primer for ecological and evolutionary studies. Molecular Ecology.1:233–240.
  • Davis, P.H., Plitmann, U.1970. Vicia L. in Flora of Turkey and the East Aegean Islands.Vol 3, Edinburgh Univ. Press, Edinburgh.
  • Davis, P.H.1988. Flora of Turkey and the East Aegean Islands. Vol 10, Edinburgh Univ. Press. Edinburgh.
  • Doyle, J.J., Doyle J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin, Botanical Society of America.19:11–15.
  • Han, Y., Wang, H. 2010. Genetic Diversity and Phylogenetic Relationships of Two Closely Related Northeast China Vicia Species Revealed with RAPD and ISSR Markers. Biochem Genet. 48:385–401.
  • Harlan, J.R.1956. Theory and dynamics of grassland Agriculture.D. Van. Noztrand Co. Inc.,Princeton.
  • Kupicha, F.K.1976. The infrageneric structure of Vicia. Notes from the Royal Botanical Garden of Edinburgh.34:287– 326.
  • Mabberley, D.J. 1997. The plant book. Cambridge Univ. Press,Cambrige.
  • Noorozi, S., Baghizadeh, A., Javaran, M.J. 2009. The genetic diversity of Iranian pistachio (Pistaciavera L.) cultivars revealed by ISSR markers. Biological Diversity and Conservation. 2/2: 50-56
  • Rohlf, F. J. 1998. NTSYSpc numerical taxonomy and multivariate analysis system user guide, Exeter Software, New York, 0-925031-28-3.
  • Seçmen,Ö.,Gemici, Y., Leblebici, E., Görk, G., Bekat, L. 1989. TohumluBitkilersistematiği. Ege Univ. Fen. Fak., Kitaplar Ser.
  • Sica, M., Gamba, G., Montieri, S., Gaudio, L., Aceto S. 2005. ISSR markers show differentiation among Italian populations of Asparagus acutifoliusL. BMC Genetics. 6:17.
  • Soltis, D.E., Collõer, T.G., Edgerton, M.L. 1991. The Heuchera group (Saxifragaceae): Evidence for chloroplast transfer and paraphyly.Amer.J.Bot.78:1091–1112.
  • Terzopoulos, P.J., Bebeli, P.J. 2008. Genetic diversity analysis of Mediterranean faba bean (Vicia faba L.) with ISSR markers. Field Crops Research. 108:39–44.
  • Uysal, T., Özel, E., Bozkurt, M., Ertuğrul, K. 2012. Genetic Diversity in Threatened Populations of the Endemic Species CentaurealycaonicaBoiss. &Heldr. (Asteraceae). Research Journal of Biology. 2(3): 110-116.
  • Vavilov, N.I.1951. The origin, variation, immunity and breeding cultivated plants. Translated by K.Start. Chron. Bot.13:1-366.
  • Venkatachalam, L., Sreedhar, R.V., Bhagyalakshmi, N. 2008. The use of genetic markers for detecting DNA polymorphism, genotype identification and phylogenetic relationships among banana cultivars. Molecular Phylogenetics and Evolution. 47:974–985.
  • Wang, H., Zong, X., Guan,J.,Yang, T., Sun, X., Ma, Y., Redden, R.2012.Genetic diversity and relationship of global faba bean (Vicia fabaL.) germplasm revealed by ISSR markers. Theor. Appl. Genet. 124:789–797.
  • Young, J.P.W., Mutch, L.A., Ashford, D.A., Zézé, A., Mutch, K.E. 2003. The molecular evolution of host specificity in the rhizobium-legume symbiosis. In: Hails R, Godfray HCJ, Beringer J (eds) Genes in the environment. Blackwell, Oxford, pp 245–257
  • Zietkiewicz, E., Rafalski, A., Labuda, D. 1994.Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification. Genomics.20:176-183.
There are 21 citations in total.

Details

Primary Language Turkish
Journal Section Research Article
Authors

Meryem Bozkurt This is me

Kuddisi Ertuğrul This is me

Tuna Uysal This is me

Publication Date December 15, 2013
Published in Issue Year 2013 Volume: 6 Issue: 3

Cite

APA Bozkurt, M., Ertuğrul, K., & Uysal, T. (2013). ISSR markırlarıkullanılarakbazıVicia L. Fiğ taksonlarıarasındakigenetikakrabalıklarınbelirlenmesi. Biological Diversity and Conservation, 6(3), 135-139.

❖  Abstracted-Indexed in
Web of Science {Zoological Records Indexed] Clavariate Analytic, Medical Reads (RRS), CrossRef;10.46309/biodicon.

❖ Libraries
Aberystwyth University; All libraries; Bath University; Birmingham University; Cardiff University; City University London; CONSER (Not UK Holdings); Edinburgh University; Essex University; Exeter University; Eskişehir Technical University Library; EZB Electronic Journals Library; Feng Chia University Library; GAZİ Gazi University Library; Glasgow University; HEC-National Digital Library; Hull University; Imperial College London; Kaohsinug Medical University Library; ANKOS; Anadolu University Library; Lancaster University; Libros PDF; Liverpool University; London Metropolitan University; London School of Economics and Political Science; Manchester University; National Cheng Kung University Library; National ILAN University Library; Nottingham University; Open University; Oxford University; Queen Mary,University of London;Robert Gordon University; Royal Botanic Gardens, Kew; Sheffield Hallam University; Sheffield University; Shih Hsin University Library; Smithsonian Institution Libraries; Southampton University; Stirling University; Strathclyde University; Sussex University; The National Agricultural Library (NAL); The Ohio Library and Information NetWork; Trinity College Dublin; University of Washington Libraries; Vaughan Memorial Library; York University..

❖ The article processing is free.

❖ Web of Science-Clarivate Analytics, Zoological Record
❖ This journal is a CrossRef;10.46309/biodicon. member

❖ Please visit ” http:// www.biodicon.com“ ; "https://dergipark.org.tr/en/pub/biodicon"   for instructions about articles and all of the details about journal


❖  Correspondance Adres: Prof. Ersin YÜCEL, Sazova Mahallesi, Ziraat Caddesi, No.277 F Blok, 26005 Tepebaşı-Eskişehir/Türkiye
E-posta / E-mail: biodicon@gmail.com;
Web Address: http://www.biodicon.com;   https://dergipark.org.tr/en/pub/biodicon
❖ Biological Diversity and Conservation/ Biyolojik Çeşitlilik ve Koruma
❖ ISSN 1308-5301 Print; ISSN 1308-8084 Online
❖ Start Date Published 2008
© Copyright by Biological Diversity and Conservation/Biyolojik Çeşitlilik ve Koruma-Available online at www.biodicon.com/All rights reserved
Publisher : ERSİN YÜCEL (https://www.ersinyucel.com.tr/)
❖ This journal is published three numbers in a year. Printed in Eskişehir/Türkiye.
❖ All sorts of responsibilities of the articles published in this journal are belonging to the authors
Editör / Editor-In-Chief : Prof.Dr. Ersin YÜCEL, https://orcid.org/0000-0001-8274-7578