BibTex RIS Cite

Estimation of genetic divergence among elite mungbean Vigna radiata genotypes by RAPD analysis

Year 2010, Volume: 3 Issue: 1, 75 - 82, 15.04.2010

Abstract

Genetic diversity among 15 mungbean genotypes of Pakistan was assessed through Random Amplified Polymorphic DNA RAPD analysis, with 30 random decamer primers using polymerase chain reaction PCR . A total of 370 bands were observed, with 12.3 bands per primer, of which 91.6% were polymorphic. OPG-08 produced maximum number of fragments while minimum numbers of fragments were produced with primer OPH-05. Cluster analysis by the Unweighted Paired Group Method of Arithmetic means UPGMA showed that these 15 genotypes could be classified in five groups with a similarity ranging from 0.48-0.86. Maximum similarity was observed between NM-51, NM-54 and NM-98 0.86 . Interestingly, these mungbean genotypes have been developed at one breeding center, while ML-5 was found the least similar line due to its exotic nature. The analysis revealed that the inter-varietal genetic relationship of several genotypes is related to their center of origin. Most of the mungbean genotypes have a narrow genetic base. These results correspond well with previous reported results on mungbean from other countries. The RAPD analysis indicated that it may be a more efficient marker than morphological marker, isozyme and RFLP technology. Based on present results, these genotypes could be successfully utilized in selecting divergent parents for breeding and mapping purposes in future

References

  • Afzal, M.A., Haque, M.M., Shanmugasundaram, S. 2004. Random amplified polymorphic DNA (RAPD) analysis of selected mungbean (Vigna radiata L. Wilczek) cultivars. Asian J. Pl. Sci. 3: 20–24.
  • Arunachalam, V. 1981. Genetic distance in plant breeding. Indian J. Genet. 14: 226-236.
  • Bisht, I.S., Mahajan R.K., Kawalkar, T.G. 1998. Diversity in mungbean (Vigna radiata L. Wilczek) germplasm collection and its potential use in crop improvement. Ann. Appl. Biol. 132: 301– 312.
  • Galvan, M.Z., Bornet, B., Balatti, P.A., Branchard, M. 2003. Inter simple sequence repeat (ISSR) markers as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.). Euphytica 132: 297–301.
  • Ghosh, S., Karanjawala, Z.E., Hauser, E.R. 1997. Methods for precise sizing, automated inning of alleles and reduction or error rates in large scale genotyping using fluorescently labeled dinucleotide markers. Genome Res. 7: 165-178.
  • Jaccard, P. 1908. Nauvelles recherches sur la distribution florale. Bull Soc Vaudoise Sci Nat. 44: 223-270.
  • Lakhanpaul, S., Chadha, S., Bhat, K.V. 2000. Random amplified polymorphic DNA analysis in Indian mungbean (Vigna radiata L. Wilczek) cultivars. Genetica. 109: 227–234.
  • MINFAL, 2007. Agricultural Statistics of Pakistan.
  • Multani, D.S., Lyon, B.R. 1995. Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome. 38: 1005-1008.
  • Muthusamy, S., Kanagarajan, S., Shanmugasundaram, P. 2008. Efficiency of RAPD and ISSR markers system in accessing genetic variation of rice bean (Vigna umbellata) landraces. Electronic J. Biotech. 3 (11): 1-10.
  • Newbury, H.J., Ford-Lloyd, B.V. 1993. The use of RAPD for assessing variation in plants. Plant Growth Regulation. 12: 43-51.
  • Roopa, L.G., Jyoti, S., Shirish, A.R. 2008. Molecular assessment of genetic diversity in mungbean germplasm. J. Genet. (87) 1: 65-74.
  • Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A., Allard, R.W. 1984. Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc. Nat. Acad. Sci., USA. 81: 8014-8018.
  • Saini, A., Reddy, K.S., Jawali, N. 2004. Evaluation of long primers for AP-PCR analysis of mungbean [Vigna radiata L. Wilczek]: Genetic relationships and finger printing of some genotypes. Indian J. Biotech. 3: 511–518.
  • Santalla, M., Power, J.B., Davey, M.R. 1998. Genetic diversity in mungbean germplasm revealed by RAPD markers. Plant Breed. 117: 473–478.
  • Smartt, J. 1985. Evolution of grain legumes III. Pulses in the genus Vigna. Exp. Agric. 21: 87-100.
  • Vavilov, N.I. 1951. The origin, variation, immunity and breeding of cultivated plants. (Translated by K.S Chester). Chronica Botanica 13: 1-364.
  • Williams, J.G.K., Kubelik, A.R., Levak, K.J., Rafalski, J.A., Tingey, S.V. 1990. DNA polymorphism amplification by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18: 6531-6535.
Year 2010, Volume: 3 Issue: 1, 75 - 82, 15.04.2010

Abstract

References

  • Afzal, M.A., Haque, M.M., Shanmugasundaram, S. 2004. Random amplified polymorphic DNA (RAPD) analysis of selected mungbean (Vigna radiata L. Wilczek) cultivars. Asian J. Pl. Sci. 3: 20–24.
  • Arunachalam, V. 1981. Genetic distance in plant breeding. Indian J. Genet. 14: 226-236.
  • Bisht, I.S., Mahajan R.K., Kawalkar, T.G. 1998. Diversity in mungbean (Vigna radiata L. Wilczek) germplasm collection and its potential use in crop improvement. Ann. Appl. Biol. 132: 301– 312.
  • Galvan, M.Z., Bornet, B., Balatti, P.A., Branchard, M. 2003. Inter simple sequence repeat (ISSR) markers as a tool for the assessment of both genetic diversity and gene pool origin in common bean (Phaseolus vulgaris L.). Euphytica 132: 297–301.
  • Ghosh, S., Karanjawala, Z.E., Hauser, E.R. 1997. Methods for precise sizing, automated inning of alleles and reduction or error rates in large scale genotyping using fluorescently labeled dinucleotide markers. Genome Res. 7: 165-178.
  • Jaccard, P. 1908. Nauvelles recherches sur la distribution florale. Bull Soc Vaudoise Sci Nat. 44: 223-270.
  • Lakhanpaul, S., Chadha, S., Bhat, K.V. 2000. Random amplified polymorphic DNA analysis in Indian mungbean (Vigna radiata L. Wilczek) cultivars. Genetica. 109: 227–234.
  • MINFAL, 2007. Agricultural Statistics of Pakistan.
  • Multani, D.S., Lyon, B.R. 1995. Genetic fingerprinting of Australian cotton cultivars with RAPD markers. Genome. 38: 1005-1008.
  • Muthusamy, S., Kanagarajan, S., Shanmugasundaram, P. 2008. Efficiency of RAPD and ISSR markers system in accessing genetic variation of rice bean (Vigna umbellata) landraces. Electronic J. Biotech. 3 (11): 1-10.
  • Newbury, H.J., Ford-Lloyd, B.V. 1993. The use of RAPD for assessing variation in plants. Plant Growth Regulation. 12: 43-51.
  • Roopa, L.G., Jyoti, S., Shirish, A.R. 2008. Molecular assessment of genetic diversity in mungbean germplasm. J. Genet. (87) 1: 65-74.
  • Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A., Allard, R.W. 1984. Ribosomal DNA spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics. Proc. Nat. Acad. Sci., USA. 81: 8014-8018.
  • Saini, A., Reddy, K.S., Jawali, N. 2004. Evaluation of long primers for AP-PCR analysis of mungbean [Vigna radiata L. Wilczek]: Genetic relationships and finger printing of some genotypes. Indian J. Biotech. 3: 511–518.
  • Santalla, M., Power, J.B., Davey, M.R. 1998. Genetic diversity in mungbean germplasm revealed by RAPD markers. Plant Breed. 117: 473–478.
  • Smartt, J. 1985. Evolution of grain legumes III. Pulses in the genus Vigna. Exp. Agric. 21: 87-100.
  • Vavilov, N.I. 1951. The origin, variation, immunity and breeding of cultivated plants. (Translated by K.S Chester). Chronica Botanica 13: 1-364.
  • Williams, J.G.K., Kubelik, A.R., Levak, K.J., Rafalski, J.A., Tingey, S.V. 1990. DNA polymorphism amplification by arbitrary primers are useful as genetic markers. Nucleic Acid Res. 18: 6531-6535.
There are 18 citations in total.

Details

Primary Language English
Journal Section Research Article
Authors

Hidayat Ullah This is me

Iftikhar Hussain Khalil This is me

David Lightfoot This is me

Iltaf Ullah This is me

Hidayat-ur- Rahman This is me

Publication Date April 15, 2010
Published in Issue Year 2010 Volume: 3 Issue: 1

Cite

APA Ullah, H., Khalil, I. H., Lightfoot, D., Ullah, I., et al. (2010). Estimation of genetic divergence among elite mungbean Vigna radiata genotypes by RAPD analysis. Biological Diversity and Conservation, 3(1), 75-82.

❖  Abstracted-Indexed in
Web of Science {Zoological Records Indexed] Clavariate Analytic, Medical Reads (RRS), CrossRef;10.46309/biodicon.

❖ Libraries
Aberystwyth University; All libraries; Bath University; Birmingham University; Cardiff University; City University London; CONSER (Not UK Holdings); Edinburgh University; Essex University; Exeter University; Eskişehir Technical University Library; EZB Electronic Journals Library; Feng Chia University Library; GAZİ Gazi University Library; Glasgow University; HEC-National Digital Library; Hull University; Imperial College London; Kaohsinug Medical University Library; ANKOS; Anadolu University Library; Lancaster University; Libros PDF; Liverpool University; London Metropolitan University; London School of Economics and Political Science; Manchester University; National Cheng Kung University Library; National ILAN University Library; Nottingham University; Open University; Oxford University; Queen Mary,University of London;Robert Gordon University; Royal Botanic Gardens, Kew; Sheffield Hallam University; Sheffield University; Shih Hsin University Library; Smithsonian Institution Libraries; Southampton University; Stirling University; Strathclyde University; Sussex University; The National Agricultural Library (NAL); The Ohio Library and Information NetWork; Trinity College Dublin; University of Washington Libraries; Vaughan Memorial Library; York University..

❖ The article processing is free.

❖ Web of Science-Clarivate Analytics, Zoological Record
❖ This journal is a CrossRef;10.46309/biodicon. member

❖ Please visit ” http:// www.biodicon.com“ ; "https://dergipark.org.tr/en/pub/biodicon"   for instructions about articles and all of the details about journal


❖  Correspondance Adres: Prof. Ersin YÜCEL, Sazova Mahallesi, Ziraat Caddesi, No.277 F Blok, 26005 Tepebaşı-Eskişehir/Türkiye
E-posta / E-mail: biodicon@gmail.com;
Web Address: http://www.biodicon.com;   https://dergipark.org.tr/en/pub/biodicon
❖ Biological Diversity and Conservation/ Biyolojik Çeşitlilik ve Koruma
❖ ISSN 1308-5301 Print; ISSN 1308-8084 Online
❖ Start Date Published 2008
© Copyright by Biological Diversity and Conservation/Biyolojik Çeşitlilik ve Koruma-Available online at www.biodicon.com/All rights reserved
Publisher : ERSİN YÜCEL (https://www.ersinyucel.com.tr/)
❖ This journal is published three numbers in a year. Printed in Eskişehir/Türkiye.
❖ All sorts of responsibilities of the articles published in this journal are belonging to the authors
Editör / Editor-In-Chief : Prof.Dr. Ersin YÜCEL, https://orcid.org/0000-0001-8274-7578