Research Article
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Year 2025, Volume: 34 Issue: SI, 18 - 28, 21.08.2025
https://doi.org/10.38042/biotechstudies.1662530

Abstract

Project Number

1919B012105124

References

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Investigation of anti-inflammatory drug usage in the treatment of epilepsy through analyzing the epilepsy-inflammation relation at the molecular level

Year 2025, Volume: 34 Issue: SI, 18 - 28, 21.08.2025
https://doi.org/10.38042/biotechstudies.1662530

Abstract

Epilepsy is a neurological brain disorder that affects social life by causing seizures, loss of consciousness, and muscle contractions. The causes of epilepsy include tumors, genetic diseases, brain injuries during childbirth, and infections affecting the body. Antiepileptic drugs are commonly used for treatment, but about one-third of individuals continue to experience seizures despite medication. These drugs effectively prevent seizures but do not address the underlying mechanisms of the disease. Inflammation, i.e. biological response of the body's immune system to harmful stimuli, can be the result or cause of various diseases and is recognized as one of the contributing factors to epilepsy. This study investigates the molecular-level connection between inflammation and epilepsy through mapping transcriptomic data to reconstructed protein-protein interaction (PPI) network, reveal important subnetworks and detect potential common drug targets for inflammation and epilepsy. The most connected hub proteins of the subnetwork related to inflammation, derived from the expression data mapping are AKT1, IL6, and TLR4. After conducting molecular docking studies of anti-inflammatory drugs with these targets, Resveratrol and Fentanyl were identified as potential drugs with anti-inflammatory effects and suitable for epilepsy. Thus, we suggest further experimental studies for validation of using anti-inflammatory drugs Resveratrol and Fentanyl against epilepsy.

Supporting Institution

This study was funded by TÜBİTAK (Turkish Scientific and Technological Research Council) 2209-A University Students Research Projects Support Program with project number 1919B012105124. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Project Number

1919B012105124

Thanks

We thank the Scientific and Technological Research Council of Turkey (TÜBİTAK) for supporting our research through the 2209-A program under project number 1919B012105124.

References

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  • Alcaraz, N., List, M., Dissing-Hansen, M., Rehmsmeier, M., Tan, Q., Mollenhauer, J., Ditzel, H. J., & Baumbach, J. (2016). Robust de novo pathway enrichment with KeyPathwayMiner 5. F1000Research, 5, 1531. https://doi.org/10.12688/f1000research.9054.1
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  • Di Sapia, R., Zimmer, T. S., Kebede, V., Balosso, S., Ravizza, T., Sorrentino, D., Castillo, M. A. M., Porcu, L., Cattani, F., Ruocco, A., Aronica, E., Allegretti, M., Brandolini, L., & Vezzani, A. (2021). CXCL1-CXCR1/2 signaling is induced in human temporal lobe epilepsy and contributes to seizures in a murine model of acquired epilepsy. Neurobiology of disease, 158, 105468. https://doi.org/10.1016/j.nbd.2021.105468
  • Freshour, S. L., Kiwala, S., Cotto, K. C., Coffman, A. C., McMichael, J. F., Song, J. J., Griffith, M., Griffith, O. L., & Wagner, A. H. (2021). Integration of the Drug-Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. Nucleic acids research, 49(D1), D1144–D1151. https://doi.org/10.1093/nar/gkaa1084
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  • Heinzen, E. L., Radtke, R. A., Urban, T. J., Cavalleri, G. L., Depondt, C., Need, A. C., Walley, N. M., Nicoletti, P., Ge, D., Catarino, C. B., Duncan, J. S., Kasperaviciūte, D., Tate, S. K., Caboclo, L. O., Sander, J. W., Clayton, L., Linney, K. N., Shianna, K. V., Gumbs, C. E., Smith, J., … Goldstein, D. B. (2010). Rare deletions at 16p13.11 predispose to a diverse spectrum of sporadic epilepsy syndromes. American journal of human genetics, 86(5), 707–718. https://doi.org/10.1016/j.ajhg.2010.03.018
  • Hollander, M., Do, T., Will, T., & Helms, V. (2021). Detecting Rewiring Events in Protein-Protein Interaction Networks Based on Transcriptomic Data. Frontiers in bioinformatics, 1, 724297. https://doi.org/10.3389/fbinf.2021.724297
  • Kushwah RBS. Exploring withanolide a as a potential therapeutic agent against oral cancer: insights from molecular docking and dft calculations. IJBTCM. 2024; Volume 3 (Issue 2): Page 38-45. Lankhuijzen, L. M., & Ridler, T. (2024). Opioids, microglia, and temporal lobe epilepsy. Frontiers in neurology, 14, 1298489. https://doi.org/10.3389/fneur.2023.1298489
  • Laskowski, R. A., Jabłońska, J., Pravda, L., Vařeková, R. S., & Thornton, J. M. (2018). PDBsum: Structural summaries of PDB entries. Protein science : a publication of the Protein Society, 27(1), 129–134. https://doi.org/10.1002/pro.3289
  • Li, Z., You, Z., Li, M., Pang, L., Cheng, J., & Wang, L. (2017). Protective Effect of Resveratrol on the Brain in a Rat Model of Epilepsy. Neuroscience bulletin, 33(3), 273–280. https://doi.org/10.1007/s12264-017-0097-2
  • Liu JYW, Kasperavičiūtė D, Martinian L, Thom M, Sisodiya SM (2012) Neuropathology of 16p13.11 Deletion in Epilepsy. PLoS ONE 7(4): e34813. https://doi.org/10.1371/journal.pone.0034813
  • Maden, S. F., & Acuner, S. E. (2021). Mapping Transcriptome Data to Protein-Protein Interaction Networks of Inflammatory Bowel Diseases Reveals Disease-Specific Subnetworks. Frontiers in genetics, 12, 688447. https://doi.org/10.3389/fgene.2021.
  • Medina-Ceja, L., Salazar-Sánchez, J. C., Ortega-Ibarra, J., & Morales-Villagrán, A. (2019). Connexins-Based Hemichannels/Channels and Their Relationship with Inflammation, Seizures and Epilepsy. International journal of molecular sciences, 20(23), 5976. https://doi.org/10.3390/ijms20235976
  • Mercado-Gómez, O. F., Córdova-Dávalos, L., García-Betanzo, D., Rocha, L., Alonso-Vanegas, M. A., Cienfuegos, J., & Guevara-Guzmán, R. (2018). Overexpression of inflammatory-related and nitric oxide synthase genes in olfactory bulbs from frontal lobe epilepsy patients. Epilepsy research, 148, 37–43. https://doi.org/10.1016/j.eplepsyres.2018.09.012
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There are 52 citations in total.

Details

Primary Language English
Subjects Genomics and Transcriptomics, Proteomics and Intermolecular Interactions, Medical Biotechnology Diagnostics
Journal Section Research Article
Authors

Buse Nur Maden This is me 0009-0005-1771-7854

Saliha Ece Acuner 0000-0003-0336-0645

Project Number 1919B012105124
Submission Date August 22, 2024
Acceptance Date March 11, 2025
Early Pub Date March 21, 2025
Publication Date August 21, 2025
Published in Issue Year 2025 Volume: 34 Issue: SI

Cite

APA Maden, B. N., & Acuner, S. E. (2025). Investigation of anti-inflammatory drug usage in the treatment of epilepsy through analyzing the epilepsy-inflammation relation at the molecular level. Biotech Studies, 34(SI), 18-28. https://doi.org/10.38042/biotechstudies.1662530


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