Research Article
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Year 2024, Volume: 33 Issue: 2, 74 - 81
https://doi.org/10.38042/biotechstudies.1483793

Abstract

References

  • Anonymous. (2017). The European Cultivated Potato Database. https://www.europotato.org/. Accessed 4 May 2023.
  • Ballicora, M. A., Iglesias, A. A., & Preiss, J. (2004). ADP-glucose pyrophosphorylase: a regulatory enzyme for plant starch synthesis. Photosynthesis Research, 79(1), 1-24. https://doi.org/10.1023/B:PRES.0000011916.67519.58.
  • Bradshaw, J. E., Hackett, C. A., Pande, B., Waugh, R., & Bryan, G. J. (2008). QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum). Theorotical and Applied Genetics, 116(2), 193-211. https://doi.org/10.1007/s00122-007-0659-1.
  • Cottrell, J. E., Duffus, C. M., Paterson, L., Mackay, G. R., Allison, M. J., & Bain, H. (1993). The effect of storage temperature on reducing sugar concentration and the activities of three amylolytic enzymes in tubers of the cultivated potato, Solanum tuberosum L. Potato Research, 36(2), 107-117. https://doi.org/10.1007/BF02358725.
  • D’hoop, B. B., Keizer, P. L., Paulo, M. J., Visser, R. G., van Eeuwijk, F. A., & van Eck, H. J. (2014). Identification of agronomically important QTL in tetraploid potato cultivars using a marker–trait association analysis. Theorotical and Applied Genetics, 127, 731-748. https://doi.org/10.1007/s00122-013-2254-y.
  • Freyre, R., & Douches, D. S. (1994). Development of a model for marker‐assisted selection of specific gravity in diploid potato across environments. Crop Science, 34(5), 1361-1368. https://doi.org/10.2135/cropsci1994.0011183X003400050040x.
  • Friedman, M., & Levin, C. E. (2009). Analysis and biological activities of potato glycoalkaloids, calystegine alkaloids, phenolic compounds, and anthocyanins. In Advances in potato chemistry and technology, Academic Press.
  • Haase, N. U. (2003). Estimation of dry matter and starch concentration in potatoes by determination of under-water weight and near infrared spectroscopy. Potato Research, 46(3), 117-127. https://doi.org/10.1007/BF02736081.
  • Li, L., Paulo, M. J., Strahwald, J., Lübeck, J., Hofferbert, H. R., Tacke, E., Junghans, H., Wunder, J., Draffehn, A., van Eeuwijk, F., & Gebhardt C. (2008). Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield. Theorotical and Applied Genetics, 116(8), 1167-1181. https://doi.org/10.1007/s00122-008-0746-y. Li, L., Tacke, E., Hofferbert, H. R., Lübeck, J., Strahwald, J., Draffehn, A. M., Walkemeier, B., & Gebhardt C. (2013). Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality. Theorotical and Applied Genetics, 126(4), 1039-1052. https://doi.org/10.1007%2Fs00122-012-2035-z.
  • Lisińska, G., Pęksa, A., Kita, A., Rytel, E., & Tajner-Czopek, A. (2009). The quality of potato for processing and consumption. Food, 3(2), 99-104.
  • Manrique‐Carpintero, N. C., Coombs, J. J., Cui, Y., Veilleux, R. E., Buell, C. R., & Douches, D. (2015). Genetic map and QTL analysis of agronomic traits in a diploid potato population using single nucleotide polymorphism markers. Crop Science, 55(6), 2566-2579. https://doi.org/10.2135/cropsci2014.10.0745.
  • Mestdagh, F., De Wilde, T., Castelein, P., Németh, O., Van Peteghem, C., & De Meulenaer, B. (2008). Impact of the reducing sugars on the relationship between acrylamide and Maillard browning in French fries. European Food Research and Technology, 227, 69-76. https://doi.org/10.1007/s00217-007-0694-9.
  • Milczarek, D., Przetakiewicz, A., Kamiński, P., & Flis, B. (2014). Early selection of potato clones with the H1 resistance gene-the relation of nematode resistance to quality characteristics. Czech Journal of Genetics and Plant Breeding, 50(4), 278-284. https://doi.org/10.17221/114/2014-CJGPB.
  • Rodriguez-Saona, L. E., & Wrolstad, R. E. (1997). Influence of potato composition on chip color quality. American Potato Journal, 74, 87-106. https://doi.org/10.1007/BF02851555.
  • Roe, M. A., Faulks, R. M., & Belsten, J. L. (1990). Role of reducing sugars and amino acids in fry colour of chips from potatoes grown under different nitrogen regimes. Journal of the Science of Food and Agriculture, 52(2), 207-214. https://doi.org/10.1002/jsfa.2740520207.
  • Schönhals, E. M., Ding, J., Ritter, E., Paulo, M. J., Cara, N., Tacke, E., Reinhard Hofferbert, H., Lübeck, J., Strahwald, J., & Gebhardt, C. (2017). Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array. BMC Genomics, 18(1), 1-20. https://doi.org/10.1186/s12864-017-3979-9.
  • Schönhals, E. M., Ortega, F., Barandalla, L., Aragones, A., Ruiz de Galarreta, J. I., Liao, J. C., Sanetomo, R., Walkemeier, B., Tacke, E., Ritter, E., & Gebhardt, C. (2016). Identification and reproducibility of diagnostic DNA markers for tuber starch and yield optimization in a novel association mapping population of potato (Solanum tuberosum L.). Theorotical and Applied Genetics, 129, 767-785. https://doi.org/10.1007/s00122-016-2665-7.
  • Schreiber, L., Nader-Nieto, A. C., Schönhals, E. M., Walkemeier, B., & Gebhardt, C. (2014). SNPs in genes functional in starch-sugar interconversion associate with natural variation of tuber starch and sugar content of potato (Solanum tuberosum L.). G3-Genes Genomes and Genetics, 4(10), 1797-1811. https://doi.org/10.1534/g3.114.012377.
  • Sharma, S. K., MacKenzie, K., McLean, K., Dale, F., Daniels, S., & Bryan, G. J. (2018). Linkage disequilibrium and evaluation of genome-wide association mapping models in tetraploid potato. G3-Genes Genomes and Genetics, 8(10), 3185-3202. https://doi.org/ 10.1534/g3.118.200377.
  • Sobol, Z., Jakubowski, T., & Nawara, P. (2020). The effect of UV-C stimulation of potato tubers and soaking of potato strips in water on color and analyzed color by CIE L* a* b. Sustainability, 12(8), 3487. https://doi.org/10.3390/su12083487.
  • Sołtys-Kalina, D., Szajko, K., Wasilewicz-Flis, I., Mańkowski, D., Marczewski, W., & Śliwka, J. (2020). Quantitative trait loci for starch-corrected chip color after harvest, cold storage and after reconditioning mapped in diploid potato. Molecular Genetics and Genomics, 295(1), 209-219. https://doi.org/10.1007/s00438-019-01616-1.
  • Sverrisdóttir, E., Byrne, S., Sundmark, E. H. R., Johnsen, H. Ø., Kirk, H. G., Asp, T., Janss, L., & Nielsen, K. L. (2017). Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing. Theorotical and Applied Genetics, 130(10), 2091-2108. https://doi.org/10.1007/s00122-017-2944-y.
  • Urbany, C., Stich, B., Schmidt, L., Simon, L., Berding, H., Junghans, H., Niehoff, K. H., Braun, A., Tacke, E., Hofferbert, H. R., Lübeck, J., Strahwald, J., & Gebhardt, C. (2011). Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration. BMC Genetics, 12(1), 1-14. https://doi.org/10.1186/1471-2164-12-7.
  • Yavuz, C. (2016). Patateste sanayilik çeşit ıslahında markör yardımlı seleksiyonun uygulama olanakları. Master Dissertation. Niğde: Niğde Omer Halisdemir University.

Assessment of the usability of four molecular markers to ıdentify potato genotypes suitable for processing

Year 2024, Volume: 33 Issue: 2, 74 - 81
https://doi.org/10.38042/biotechstudies.1483793

Abstract

The development of processing potato cultivars through a conventional breeding program requires a detailed analysis of post-harvest traits, which is a process that demands high labor and is often time-consuming. Visual selection by breeders is biased and difficult in the field, particularly for quality traits, which shows the importance of marker-assisted selection over conventional techniques. In this study, four allele-specific markers, AGPsS-9a, Stp23-8b, StpL-3e, and Pain1-8c, developed from tuber quality-related genes, were used to screen a breeding population of the NOHU for processing traits to check the efficiency of these markers in processing trait selection. Marker association with tuber quality trait results showed that AGPsS-9a (0, absent) and StpL-3e (0) individually were associated with increased chips quality, yet their individual presence improved the reducing sugar content. Further, Pain1-8c presence was associated with high levels of reducing sugar accumulation and lower dry matter content, specific gravity, and starch content. The marker combination Stp23-8b (0) and StpL-3e (0) reached statistical significance (P≤0.05) for better chips quality in the NOHU population. However, the markers (individual and combination) showed poor selection efficiency as a diagnostic marker, possibly reasoning from the multigenic inheritance of tuber quality traits, population structure, and environment.

Thanks

This work was produced from the MSc thesis study of Caner Yavuz. We would like to particularly thank Dr. Christina Gebhardt for providing positive/negative controls from their studies. We greatly appreciate Prof. Dr. Sevgi Caliskan for her valuable contributions and we also thank Dr. Ayten Kubra Yagiz, Cehibe Tarim and İlknur Tindas for their help during the work.

References

  • Anonymous. (2017). The European Cultivated Potato Database. https://www.europotato.org/. Accessed 4 May 2023.
  • Ballicora, M. A., Iglesias, A. A., & Preiss, J. (2004). ADP-glucose pyrophosphorylase: a regulatory enzyme for plant starch synthesis. Photosynthesis Research, 79(1), 1-24. https://doi.org/10.1023/B:PRES.0000011916.67519.58.
  • Bradshaw, J. E., Hackett, C. A., Pande, B., Waugh, R., & Bryan, G. J. (2008). QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum). Theorotical and Applied Genetics, 116(2), 193-211. https://doi.org/10.1007/s00122-007-0659-1.
  • Cottrell, J. E., Duffus, C. M., Paterson, L., Mackay, G. R., Allison, M. J., & Bain, H. (1993). The effect of storage temperature on reducing sugar concentration and the activities of three amylolytic enzymes in tubers of the cultivated potato, Solanum tuberosum L. Potato Research, 36(2), 107-117. https://doi.org/10.1007/BF02358725.
  • D’hoop, B. B., Keizer, P. L., Paulo, M. J., Visser, R. G., van Eeuwijk, F. A., & van Eck, H. J. (2014). Identification of agronomically important QTL in tetraploid potato cultivars using a marker–trait association analysis. Theorotical and Applied Genetics, 127, 731-748. https://doi.org/10.1007/s00122-013-2254-y.
  • Freyre, R., & Douches, D. S. (1994). Development of a model for marker‐assisted selection of specific gravity in diploid potato across environments. Crop Science, 34(5), 1361-1368. https://doi.org/10.2135/cropsci1994.0011183X003400050040x.
  • Friedman, M., & Levin, C. E. (2009). Analysis and biological activities of potato glycoalkaloids, calystegine alkaloids, phenolic compounds, and anthocyanins. In Advances in potato chemistry and technology, Academic Press.
  • Haase, N. U. (2003). Estimation of dry matter and starch concentration in potatoes by determination of under-water weight and near infrared spectroscopy. Potato Research, 46(3), 117-127. https://doi.org/10.1007/BF02736081.
  • Li, L., Paulo, M. J., Strahwald, J., Lübeck, J., Hofferbert, H. R., Tacke, E., Junghans, H., Wunder, J., Draffehn, A., van Eeuwijk, F., & Gebhardt C. (2008). Natural DNA variation at candidate loci is associated with potato chip color, tuber starch content, yield and starch yield. Theorotical and Applied Genetics, 116(8), 1167-1181. https://doi.org/10.1007/s00122-008-0746-y. Li, L., Tacke, E., Hofferbert, H. R., Lübeck, J., Strahwald, J., Draffehn, A. M., Walkemeier, B., & Gebhardt C. (2013). Validation of candidate gene markers for marker-assisted selection of potato cultivars with improved tuber quality. Theorotical and Applied Genetics, 126(4), 1039-1052. https://doi.org/10.1007%2Fs00122-012-2035-z.
  • Lisińska, G., Pęksa, A., Kita, A., Rytel, E., & Tajner-Czopek, A. (2009). The quality of potato for processing and consumption. Food, 3(2), 99-104.
  • Manrique‐Carpintero, N. C., Coombs, J. J., Cui, Y., Veilleux, R. E., Buell, C. R., & Douches, D. (2015). Genetic map and QTL analysis of agronomic traits in a diploid potato population using single nucleotide polymorphism markers. Crop Science, 55(6), 2566-2579. https://doi.org/10.2135/cropsci2014.10.0745.
  • Mestdagh, F., De Wilde, T., Castelein, P., Németh, O., Van Peteghem, C., & De Meulenaer, B. (2008). Impact of the reducing sugars on the relationship between acrylamide and Maillard browning in French fries. European Food Research and Technology, 227, 69-76. https://doi.org/10.1007/s00217-007-0694-9.
  • Milczarek, D., Przetakiewicz, A., Kamiński, P., & Flis, B. (2014). Early selection of potato clones with the H1 resistance gene-the relation of nematode resistance to quality characteristics. Czech Journal of Genetics and Plant Breeding, 50(4), 278-284. https://doi.org/10.17221/114/2014-CJGPB.
  • Rodriguez-Saona, L. E., & Wrolstad, R. E. (1997). Influence of potato composition on chip color quality. American Potato Journal, 74, 87-106. https://doi.org/10.1007/BF02851555.
  • Roe, M. A., Faulks, R. M., & Belsten, J. L. (1990). Role of reducing sugars and amino acids in fry colour of chips from potatoes grown under different nitrogen regimes. Journal of the Science of Food and Agriculture, 52(2), 207-214. https://doi.org/10.1002/jsfa.2740520207.
  • Schönhals, E. M., Ding, J., Ritter, E., Paulo, M. J., Cara, N., Tacke, E., Reinhard Hofferbert, H., Lübeck, J., Strahwald, J., & Gebhardt, C. (2017). Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array. BMC Genomics, 18(1), 1-20. https://doi.org/10.1186/s12864-017-3979-9.
  • Schönhals, E. M., Ortega, F., Barandalla, L., Aragones, A., Ruiz de Galarreta, J. I., Liao, J. C., Sanetomo, R., Walkemeier, B., Tacke, E., Ritter, E., & Gebhardt, C. (2016). Identification and reproducibility of diagnostic DNA markers for tuber starch and yield optimization in a novel association mapping population of potato (Solanum tuberosum L.). Theorotical and Applied Genetics, 129, 767-785. https://doi.org/10.1007/s00122-016-2665-7.
  • Schreiber, L., Nader-Nieto, A. C., Schönhals, E. M., Walkemeier, B., & Gebhardt, C. (2014). SNPs in genes functional in starch-sugar interconversion associate with natural variation of tuber starch and sugar content of potato (Solanum tuberosum L.). G3-Genes Genomes and Genetics, 4(10), 1797-1811. https://doi.org/10.1534/g3.114.012377.
  • Sharma, S. K., MacKenzie, K., McLean, K., Dale, F., Daniels, S., & Bryan, G. J. (2018). Linkage disequilibrium and evaluation of genome-wide association mapping models in tetraploid potato. G3-Genes Genomes and Genetics, 8(10), 3185-3202. https://doi.org/ 10.1534/g3.118.200377.
  • Sobol, Z., Jakubowski, T., & Nawara, P. (2020). The effect of UV-C stimulation of potato tubers and soaking of potato strips in water on color and analyzed color by CIE L* a* b. Sustainability, 12(8), 3487. https://doi.org/10.3390/su12083487.
  • Sołtys-Kalina, D., Szajko, K., Wasilewicz-Flis, I., Mańkowski, D., Marczewski, W., & Śliwka, J. (2020). Quantitative trait loci for starch-corrected chip color after harvest, cold storage and after reconditioning mapped in diploid potato. Molecular Genetics and Genomics, 295(1), 209-219. https://doi.org/10.1007/s00438-019-01616-1.
  • Sverrisdóttir, E., Byrne, S., Sundmark, E. H. R., Johnsen, H. Ø., Kirk, H. G., Asp, T., Janss, L., & Nielsen, K. L. (2017). Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing. Theorotical and Applied Genetics, 130(10), 2091-2108. https://doi.org/10.1007/s00122-017-2944-y.
  • Urbany, C., Stich, B., Schmidt, L., Simon, L., Berding, H., Junghans, H., Niehoff, K. H., Braun, A., Tacke, E., Hofferbert, H. R., Lübeck, J., Strahwald, J., & Gebhardt, C. (2011). Association genetics in Solanum tuberosum provides new insights into potato tuber bruising and enzymatic tissue discoloration. BMC Genetics, 12(1), 1-14. https://doi.org/10.1186/1471-2164-12-7.
  • Yavuz, C. (2016). Patateste sanayilik çeşit ıslahında markör yardımlı seleksiyonun uygulama olanakları. Master Dissertation. Niğde: Niğde Omer Halisdemir University.
There are 24 citations in total.

Details

Primary Language English
Subjects Plant Biotechnology in Agriculture
Journal Section Research Articles
Authors

Caner Yavuz This is me 0000-0003-4427-1227

Ufuk Demirel 0000-0002-3457-5086

Mehmet Emin Çalışkan 0000-0002-4703-8853

Early Pub Date May 14, 2024
Publication Date
Submission Date October 27, 2023
Acceptance Date April 17, 2024
Published in Issue Year 2024 Volume: 33 Issue: 2

Cite

APA Yavuz, C., Demirel, U., & Çalışkan, M. E. (2024). Assessment of the usability of four molecular markers to ıdentify potato genotypes suitable for processing. Biotech Studies, 33(2), 74-81. https://doi.org/10.38042/biotechstudies.1483793


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