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Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye

Year 2024, , 13 - 19, 01.10.2024
https://doi.org/10.16955/bitkorb.1385592

Abstract

In Erzurum and Erzincan provinces, some nematophagous fungi were determined on roots of alfalfa (Medicago sativa L.), potato (Solanum tuberosum L.), and strawberry (Fragaria x ananassa Duchesne) plants during 2009-2011, and identification of fungi species was performed by classical and/or molecular techniques. Purified 5 isolates were determined as Arthrobotrys cladodes Drechsler 1937 (1 isolate), Arthrobotrys conoides Drechsler 1937 (1 isolate) and Arthrobotrys superba Corda 1839 (3 isolates). Identification of Arthrobotrys isolates was also confirmed by ribosomal DNA (rDNA)-ITS (internal transcribed spacer) sequence analysis. Harposporium genus was also determined considering the morphological characteristic of fungal spores growing on nematodes found in two samples, but these fungi could not be purified. Harposporium species were identified as Harposporium anguillulae Lohde emend. Zopf 1888 and Harposporium crassum A.M. Sheph 1955 according to the morphological characteristic. To our knowledge, all Arthrobotrys and Harposporium species identified in this study are reported for the first time in Türkiye.

References

  • Aschner M., Kohn S., 1958. The biology of Harposporium anguillulae. The Journal of General Microbiology, 19 (1), 182-189.
  • Back M.A., Haydock P.P.J., Jenkinson P., 2002. Disease complexes involving plant parasitic nematodes and soilborne pathogens. Plant Pathology, 51 (6), 683-697.
  • De Freitas Soares F.E., Sufiate B.L., De Queiroz J H., 2018. Nematophagous fungi: far beyond the endoparasite, predator and ovicidal groups. Agriculture and Natural Resources, 52 (1), 1-8.
  • De Freitas Soares F.E., Ferreira J.M., Genier H.L.A., Al-Ani L.K.T., Aguilar-Marcelino L., 2023. Biological control 2.0: Use of nematophagous fungi enzymes for nematode control. Journal of Natural Pesticide Research, 4, 100025.
  • Eken C., Uysal G., Demir D., Çalişkan S., Sevindik E., Çağlayan K., 2023. Use of Arthrobotrys spp. in biocontrol of the root-knot nematode Meloidogyne incognita. European Journal of Biological Research, 13 (3), 173-180.
  • Genc Kesimci T., Demirer Durak E., Demirci E., 2022. Rhizoctonia species from strawberry plants in Erzincan, Turkey: anastomosis groups and pathogenicity. Journal of Animal and Plant Sciences, 32 (3), 721-728.
  • Hall T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, pp. 95-98.
  • Hyde K.D., Swe A., Zhang K. Q., 2014. Nematode-trapping fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 1-12 p.
  • İmalı A., 2005. Microfungi flora in Van (city centre) atmosphere and seasonal distribution. The Graduate School of Natural and Applied Science of Yuzuncu Yil University, Unpublished Ph.D. Thesis, 110 p. Van.
  • İmalı A., Koçer F., Yalçınkaya B., 2011. Microfungus flora of indoor and outdoor air in primary schools, Çorum, Turkey. Australian Journal of Basic and Applied Sciences, 5 (9), 2274-2278.
  • Kalyoncu F., Ekmekci S., 2008. Culturable airborne fungi in outdoor environments in Manisa, Turkey. Fresenius Environmental Bulletin, 17 (7a), 844-848.
  • Karakas M., 2015. Fungi associated with egg masses and females of plant parasitic nematode Meloidogyne incognita (Nematoda: Heteroderidae). Bangladesh Journal of Botany, 44 (3), 373-378.
  • Karling J.S., 1938. Harposporium anguillulae. Mycologia, 30, 512-519.
  • Li J., Hyde K.D., Zhang K.Q., 2014. Methodology for studying nematophagous fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 13-40 p.
  • Li J., Zou C., Xu J., Ji X., Niu X., Yang J., Huang X., Zhang K.Q., 2015. Molecular mechanisms of nematode-nematophagous microbe interactions: basis for biological control of plant-parasitic nematodes. Annual Review of Phytopathology, 53, 67-95.
  • Rubner A., 1996. Revision of predacious Hyphomycetes in the Dactylella-Monacrosporium complex. Studies in Mycology, 39, 1-134.
  • Saitou N., Nei M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4 (4), 406-425.
  • Shepherd A.M., 1955. Harposporium crassum sp. nov. Transactions of the British Mycological Society, 38 (1), 47-48.
  • Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30 (12), 2725-2729.
  • Thompson J.D., Higgins D.G., Gibson T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
  • Wang C.Y., Mo M.H., Li X., Tian B.Y., Zhang K.Q., 2007. Morphological characteristics and infection processes of nematophagous Harposporium with reference to two new species. Fungal Diversity, 26, 287-304.
  • Wang F., Wang K., Cai L., Zhao M., Kirk P.M., Fan G., Sun Q., Li B., Wang S., Yu Z., Han D., Ma J., Wu L., Yao Y., 2022. Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy. Nucleic Acids Research, 51 (D1), D708-D716.
  • White T.J., Bruns T., Lee S., Taylor J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. Innis M.A., Gelfand D.H., Sninsky J.J., White T.J., (Eds.). Academic Press, New York, 315-322 p.
  • Yadav B., Singh U.D., Malviya D., Vishwakarma S.K., Ilyas T., Shafi Z., Shahid M., Singh H. V., 2023. Nematophagous fungi: biology, ecology and potential application. In: Detection, diagnosis and management of soil-borne phytopathogens. Singh U.B., Kumar R., Singh H.B., (Eds.). Springer, Singapore, 309-328 p.
  • Yang J., Zhang K.Q., 2014. Biological control of plant-parasitic nematodes by nematophagous fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 231-262 p.
  • Yu Z.F., Mo M.H., Zhang Y., Zhang K.Q., 2014. Taxonomy of nematode-trapping fungi from Orbiliaceae, Ascomycota. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 41-210 p.
  • Yurdakul H., 2019. Determination of fungal contamination on wheat and barley seeds in Konya. Graduate School of Natural and Applied Sciences of Selçuk University, Unpublished Master Thesis, 92 p., Konya.
  • Zhang Y., Li G. H., Zhang K. Q., 2011. A review on the research of nematophagous fungal species (in Chinese). Mycosystema, 30 (6), 836-845.
  • Zhang Y., Li S., Li H., Wang R., Zhang K.Q., Xu J., 2020. Fungi–nematode interactions: diversity, ecology, and biocontrol prospects in agriculture. Journal of Fungi, 6 (4), 206. https://doi.org/10.3390/jof6040206
  • Zhang F., Boonmee S., Bhat J.D., Xiao W., Yang X.Y., 2022. New Arthrobotrys nematode-trapping species (Orbiliaceae) from terrestrial soils and freshwater sediments in China. Journal of Fungi, 8 (7), 671,. https://doi.org/10.3390/jof8070671

Türkiye'de Erzurum ve Erzincan illerinden elde edilen nematofag fungus türleri

Year 2024, , 13 - 19, 01.10.2024
https://doi.org/10.16955/bitkorb.1385592

Abstract

Erzurum ve Erzincan illerinde yonca (Medicago sativa L.), patates (Solanum tuberosum L.) ve çilek (Fragaria x ananassa Duchesne) bitkilerinin köklerinde 2009-2011 yıllarında bazı nematofag funguslar belirlenmiş ve fungus türlerinin tanılanması klasik ve/veya moleküler tekniklerle gerçekleştirilmiştir. Saflaştırılan 5 izolatın Arthrobotrys cladodes Drechsler 1937 (1 izolat), Arthrobotrys conoides Drechsler 1937 (1 izolat) ve Arthrobotrys superba Corda 1839 (3 izolat) türlerine ait olduğu belirlenmiştir. Arthrobotrys izolatlarının tanılanması ribozomal DNA (rDNA)-ITS (internal transcribed spacer) baz dizi analizi ile de doğrulanmıştır. İki örnekte bulunan nematodlar üzerinde gelişen sporların morfolojik özellikleri dikkate alınarak Harposporium cinsi de belirlenmiş, ancak bu funguslar saflaştırılamamıştır. Harposporium türleri morfolojik özelliklerine göre Harposporium anguillulae Lohde emend. Zopf 1888 ve Harposporium crassum A.M. Sheph 1955 olarak tanılanmıştır. Bildiğimiz kadarıyla bu çalışmada belirlenen tüm Arthrobotrys ve Harposporium türleri Türkiye’de ilk defa rapor edilmiştir.

References

  • Aschner M., Kohn S., 1958. The biology of Harposporium anguillulae. The Journal of General Microbiology, 19 (1), 182-189.
  • Back M.A., Haydock P.P.J., Jenkinson P., 2002. Disease complexes involving plant parasitic nematodes and soilborne pathogens. Plant Pathology, 51 (6), 683-697.
  • De Freitas Soares F.E., Sufiate B.L., De Queiroz J H., 2018. Nematophagous fungi: far beyond the endoparasite, predator and ovicidal groups. Agriculture and Natural Resources, 52 (1), 1-8.
  • De Freitas Soares F.E., Ferreira J.M., Genier H.L.A., Al-Ani L.K.T., Aguilar-Marcelino L., 2023. Biological control 2.0: Use of nematophagous fungi enzymes for nematode control. Journal of Natural Pesticide Research, 4, 100025.
  • Eken C., Uysal G., Demir D., Çalişkan S., Sevindik E., Çağlayan K., 2023. Use of Arthrobotrys spp. in biocontrol of the root-knot nematode Meloidogyne incognita. European Journal of Biological Research, 13 (3), 173-180.
  • Genc Kesimci T., Demirer Durak E., Demirci E., 2022. Rhizoctonia species from strawberry plants in Erzincan, Turkey: anastomosis groups and pathogenicity. Journal of Animal and Plant Sciences, 32 (3), 721-728.
  • Hall T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, pp. 95-98.
  • Hyde K.D., Swe A., Zhang K. Q., 2014. Nematode-trapping fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 1-12 p.
  • İmalı A., 2005. Microfungi flora in Van (city centre) atmosphere and seasonal distribution. The Graduate School of Natural and Applied Science of Yuzuncu Yil University, Unpublished Ph.D. Thesis, 110 p. Van.
  • İmalı A., Koçer F., Yalçınkaya B., 2011. Microfungus flora of indoor and outdoor air in primary schools, Çorum, Turkey. Australian Journal of Basic and Applied Sciences, 5 (9), 2274-2278.
  • Kalyoncu F., Ekmekci S., 2008. Culturable airborne fungi in outdoor environments in Manisa, Turkey. Fresenius Environmental Bulletin, 17 (7a), 844-848.
  • Karakas M., 2015. Fungi associated with egg masses and females of plant parasitic nematode Meloidogyne incognita (Nematoda: Heteroderidae). Bangladesh Journal of Botany, 44 (3), 373-378.
  • Karling J.S., 1938. Harposporium anguillulae. Mycologia, 30, 512-519.
  • Li J., Hyde K.D., Zhang K.Q., 2014. Methodology for studying nematophagous fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 13-40 p.
  • Li J., Zou C., Xu J., Ji X., Niu X., Yang J., Huang X., Zhang K.Q., 2015. Molecular mechanisms of nematode-nematophagous microbe interactions: basis for biological control of plant-parasitic nematodes. Annual Review of Phytopathology, 53, 67-95.
  • Rubner A., 1996. Revision of predacious Hyphomycetes in the Dactylella-Monacrosporium complex. Studies in Mycology, 39, 1-134.
  • Saitou N., Nei M., 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4 (4), 406-425.
  • Shepherd A.M., 1955. Harposporium crassum sp. nov. Transactions of the British Mycological Society, 38 (1), 47-48.
  • Tamura K., Stecher G., Peterson D., Filipski A., Kumar S., 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution, 30 (12), 2725-2729.
  • Thompson J.D., Higgins D.G., Gibson T.J., 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673-4680.
  • Wang C.Y., Mo M.H., Li X., Tian B.Y., Zhang K.Q., 2007. Morphological characteristics and infection processes of nematophagous Harposporium with reference to two new species. Fungal Diversity, 26, 287-304.
  • Wang F., Wang K., Cai L., Zhao M., Kirk P.M., Fan G., Sun Q., Li B., Wang S., Yu Z., Han D., Ma J., Wu L., Yao Y., 2022. Fungal names: a comprehensive nomenclatural repository and knowledge base for fungal taxonomy. Nucleic Acids Research, 51 (D1), D708-D716.
  • White T.J., Bruns T., Lee S., Taylor J., 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications. Innis M.A., Gelfand D.H., Sninsky J.J., White T.J., (Eds.). Academic Press, New York, 315-322 p.
  • Yadav B., Singh U.D., Malviya D., Vishwakarma S.K., Ilyas T., Shafi Z., Shahid M., Singh H. V., 2023. Nematophagous fungi: biology, ecology and potential application. In: Detection, diagnosis and management of soil-borne phytopathogens. Singh U.B., Kumar R., Singh H.B., (Eds.). Springer, Singapore, 309-328 p.
  • Yang J., Zhang K.Q., 2014. Biological control of plant-parasitic nematodes by nematophagous fungi. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 231-262 p.
  • Yu Z.F., Mo M.H., Zhang Y., Zhang K.Q., 2014. Taxonomy of nematode-trapping fungi from Orbiliaceae, Ascomycota. In: Nematode-trapping fungi. Fungal diversity research series. Zhang K.Q., Hyde K., (Eds.). Springer, Dordrecht, 41-210 p.
  • Yurdakul H., 2019. Determination of fungal contamination on wheat and barley seeds in Konya. Graduate School of Natural and Applied Sciences of Selçuk University, Unpublished Master Thesis, 92 p., Konya.
  • Zhang Y., Li G. H., Zhang K. Q., 2011. A review on the research of nematophagous fungal species (in Chinese). Mycosystema, 30 (6), 836-845.
  • Zhang Y., Li S., Li H., Wang R., Zhang K.Q., Xu J., 2020. Fungi–nematode interactions: diversity, ecology, and biocontrol prospects in agriculture. Journal of Fungi, 6 (4), 206. https://doi.org/10.3390/jof6040206
  • Zhang F., Boonmee S., Bhat J.D., Xiao W., Yang X.Y., 2022. New Arthrobotrys nematode-trapping species (Orbiliaceae) from terrestrial soils and freshwater sediments in China. Journal of Fungi, 8 (7), 671,. https://doi.org/10.3390/jof8070671
There are 30 citations in total.

Details

Primary Language English
Subjects Phytopathology
Journal Section Research Article
Authors

Tuba Genç Kesimci 0000-0003-2022-0193

Erkol Demirci 0000-0002-7176-1654

Early Pub Date September 29, 2024
Publication Date October 1, 2024
Submission Date November 3, 2023
Acceptance Date March 5, 2024
Published in Issue Year 2024

Cite

APA Genç Kesimci, T., & Demirci, E. (2024). Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye. Plant Protection Bulletin, 64(3), 13-19. https://doi.org/10.16955/bitkorb.1385592
AMA Genç Kesimci T, Demirci E. Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye. Plant Protection Bulletin. October 2024;64(3):13-19. doi:10.16955/bitkorb.1385592
Chicago Genç Kesimci, Tuba, and Erkol Demirci. “Nematophagous Fungi Species from Erzurum and Erzincan Provinces in Türkiye”. Plant Protection Bulletin 64, no. 3 (October 2024): 13-19. https://doi.org/10.16955/bitkorb.1385592.
EndNote Genç Kesimci T, Demirci E (October 1, 2024) Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye. Plant Protection Bulletin 64 3 13–19.
IEEE T. Genç Kesimci and E. Demirci, “Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye”, Plant Protection Bulletin, vol. 64, no. 3, pp. 13–19, 2024, doi: 10.16955/bitkorb.1385592.
ISNAD Genç Kesimci, Tuba - Demirci, Erkol. “Nematophagous Fungi Species from Erzurum and Erzincan Provinces in Türkiye”. Plant Protection Bulletin 64/3 (October 2024), 13-19. https://doi.org/10.16955/bitkorb.1385592.
JAMA Genç Kesimci T, Demirci E. Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye. Plant Protection Bulletin. 2024;64:13–19.
MLA Genç Kesimci, Tuba and Erkol Demirci. “Nematophagous Fungi Species from Erzurum and Erzincan Provinces in Türkiye”. Plant Protection Bulletin, vol. 64, no. 3, 2024, pp. 13-19, doi:10.16955/bitkorb.1385592.
Vancouver Genç Kesimci T, Demirci E. Nematophagous fungi species from Erzurum and Erzincan provinces in Türkiye. Plant Protection Bulletin. 2024;64(3):13-9.

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