TR
EN
Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β
Abstract
Glycogen synthase kinase-3β (GSK-3β) is a key enzyme involved in various biochemical pathways and is a significant therapeutic target for neurodegenerative and metabolic diseases. In this study, a novel 3,4-bis(2-methyl-1H-indol-3-yl)-1,2,5-oxadiazole derivative (4c), inspired by the nortopsentin class of marine alkaloids, was designed and synthesized. The target bis-indole furazan derivative (4c) was efficiently synthesized via microwave-assisted cyclization of its bis-indole dioxime precursor (3a) in aqueous NaOH, providing a clean and catalyst-free strategy aligned with green chemistry principles. Structural characterization was achieved by FT-IR, ¹H-NMR, ¹³C-NMR, and elemental analysis and further validated through theoretical spectral calculations. Density functional theory (DFT) calculations provided insights into the molecular geometry, vibrational frequencies, and frontier molecular orbital characteristics of 4c. Molecular docking simulations against GSK-3β (PDB ID: 1Q41) revealed a favorable binding energy (-8.38 kcal/mol) and predicted inhibition constant of 0.725 µM. Computational ADME profiling also revealed acceptable drug-likeness properties. While the present findings are based solely on computational analyses, they indicate that bis-indole furazan derivatives could be considered as potential candidates for future optimization and experimental studies targeting GSK-3β.
Keywords
Ethical Statement
Ethics committee approval was not required for this study because of there was no study on animals or humans.
References
- Alganem, K., Hamoud, A.-R., Creeden, J. F., Henkel, N. D., Imami, A. S., Joyce, A. W., Ryan, W. G., Rethman, J. B., Shukla, R., O’Donovan, S. M., Meller, J., & McCullumsmith, R. (2022). The active kinome: The modern view of how active protein kinase networks fit in biological research. Current Opinion in Pharmacology, 62, 117–129. https://doi.org/10.1016/j.coph.2021.11.007
- Alhassan, H., Janiyani, K., Surti, M., Adnan, M., & Patel, M. (2025). The dual role of glycogen synthase kinase-3 beta (GSK3β) in neurodegenerative pathologies: Interplay between autophagy disease progression. Frontiers in Pharmacology, 16, Article 1693805. https://doi.org/10.3389/fphar.2025.1693805
- Arivazhagan, M., Jeyavijayan, S., & Geethapriya, J. (2013). Conformational stability, vibrational spectra, molecular structure, NBO and HOMO–LUMO analysis of 5-nitro-2-furaldehyde oxime based on DFT calculations. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 104, 14–25. https://doi.org/10.1016/j.saa.2012.11.032
- Azmal, M., Paul, J. K., Talukder, O. F., Been Haque, A. N. M. S. N., & Ghosh, A. (2025). Computational identification of phytochemicals as glycogen synthase kinase 3 beta (GSK3β) inhibitors for therapeutic applications in chronic diseases. Scientific Reports, 15(1), Article 34882. https://doi.org/10.1038/s41598-025-17343-0
- Babalola, B. A., Malik, M., Olowokere, O., Adebesin, A., & Sharma, L. (2025). Indoles in drug design and medicinal chemistry. European Journal of Medicinal Chemistry Reports, 13, Article 100252. https://doi.org/10.1016/j.ejmcr.2025.100252
- Baier, A., & Szyszka, R. (2020). Compounds from natural sources as protein kinase inhibitors. Biomolecules, 10(11), Article 1546. https://doi.org/10.3390/biom10111546
- BIOVIA. (2017). Discovery studio modeling environment (Release 2017) [Computer software]. Dassault Systèmes.
- Bouteiller, Y., Gillet, J.-C., Grégoire, G., & Schermann, J. P. (2008). Transferable specific scaling factors for interpretation of infrared spectra of biomolecules from density functional theory. The Journal of Physical Chemistry A, 112(46), 11656–11660. https://doi.org/10.1021/jp805854q
Details
Primary Language
English
Subjects
Atomic and Molecular Physics, Organic Chemical Synthesis, Biomolecular Modelling and Design
Journal Section
Research Article
Publication Date
November 15, 2026
Submission Date
June 30, 2026
Acceptance Date
September 16, 2026
Published in Issue
Year 2026 Volume: 9 Number: 6
APA
Sevgi, F., Ekincioğlu, Y., & Karakaş Sarıkaya, E. (2026). Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β. Black Sea Journal of Engineering and Science, 9(6), 2903-2923. https://doi.org/10.34248/bsengineering.1980010
AMA
1.Sevgi F, Ekincioğlu Y, Karakaş Sarıkaya E. Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β. BSJ Eng. Sci. 2026;9(6):2903-2923. doi:10.34248/bsengineering.1980010
Chicago
Sevgi, Fatih, Yavuz Ekincioğlu, and Ebru Karakaş Sarıkaya. 2026. “Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β”. Black Sea Journal of Engineering and Science 9 (6): 2903-23. https://doi.org/10.34248/bsengineering.1980010.
EndNote
Sevgi F, Ekincioğlu Y, Karakaş Sarıkaya E (November 15, 2026) Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β. Black Sea Journal of Engineering and Science 9 6 2903–2923.
IEEE
[1]F. Sevgi, Y. Ekincioğlu, and E. Karakaş Sarıkaya, “Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β”, BSJ Eng. Sci., vol. 9, no. 6, pp. 2903–2923, Nov. 2026, doi: 10.34248/bsengineering.1980010.
ISNAD
Sevgi, Fatih - Ekincioğlu, Yavuz - Karakaş Sarıkaya, Ebru. “Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β”. Black Sea Journal of Engineering and Science 9/6 (November 15, 2026): 2903-2923. https://doi.org/10.34248/bsengineering.1980010.
JAMA
1.Sevgi F, Ekincioğlu Y, Karakaş Sarıkaya E. Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β. BSJ Eng. Sci. 2026;9:2903–2923.
MLA
Sevgi, Fatih, et al. “Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β”. Black Sea Journal of Engineering and Science, vol. 9, no. 6, Nov. 2026, pp. 2903-2, doi:10.34248/bsengineering.1980010.
Vancouver
1.Fatih Sevgi, Yavuz Ekincioğlu, Ebru Karakaş Sarıkaya. Synthesis, DFT Studies, and Molecular Docking Evaluation of a Nortopsentin-Inspired Bis-Indole Furazan Derivative Targeting GSK-3Β. BSJ Eng. Sci. 2026 Nov. 15;9(6):2903-2. doi:10.34248/bsengineering.1980010