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Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II)

Year 2020, Volume: 7 Issue: 2, 83 - 91, 31.12.2020
https://doi.org/10.48138/cjo.803919

Abstract

Hirshfeld surface analysis has been widely used in crystallography in recent years to investigate intermolecular interactions and to determine the contribution of these interactions to the crystal lattice. Fingerprint plots, which are given as color plots, present quantitative results of the types of intermolecular interactions in a molecule. In this study, we investigated intermolecular interactions and energy frameworks of Zn(II) 4-chlorophenylacetate containing pyridine 4-carboxamide complex by using CrystalExplorer program. Intermolecular interactions of the complex were determined using Hirshfeld Surface analysis. The intermolecular interaction energies of the complex were calculated using CE-HF/3-21G, CE-HF/6-31G (d), CE-HF/6-31G (d,p), CE-MP2/3-21G, CE-MP2/6-31G (d), CE-MP2/6-31G (d,p), CE-B3LYP/3-21G, CE-B3LYP/6-31G (d), CE-B3LYP/6-31G (d,p), CE-DFT/3-21G, CE-DFT/6-31G (d) and CE-DFT/6-31G (d,p) energy models that involved in CrystalExplorer (CE) program. The estimation of the intermolecular interactions and energies of the complexes is very important for the classification and investigation of their application areas.

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Project Number

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Thanks

The authors would like to thank Ali Murat Tonbul for his contributions.

References

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  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Hirshfeld F. L. (1977). Bonded-atom fragments for describing molecular charge densities. Theoretica Chimica Acta, 44(2), 129–138. https://doi.org/10.1007/BF00549096
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  • Kirste B. (2016). Applications of Density Functional Theory to Theoretical Organic Chemistry. Chemical Sciences Journal, 7(2). https://doi.org/10.4172/2150-3494.1000127
  • Turner M. J., McKinnon J. J., Wolff S. K., Grimwood D. J., Spackman P. R., Jayatilaka D., Spackman M. A., CrystalExplorer17 (2017). University of Western Australia.
  • Mackenzie C. F., Spackman P. R., Jayatilaka D., Spackman M. A. (2017). CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ, 4(5), 575–587. https://doi.org/10.1107/S205225251700848X
  • Madan Kumar S. (2019). 3D energy frameworks of dimethylbenzophenone tetramorphs. Heliyon, 5(2), e01209. https://doi.org/10.1016/j.heliyon.2019.e01209
  • McKinnon J. J., Jayatilaka D., Spackman M. A. (2007). Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications, (37), 3814. https://doi.org/10.1039/b704980c
  • Özbek F. E., Sertçelik M., Yüksek M., Uğurlu G., Tonbul A. M., Necefoğlu H., Hökelek T. (2019). Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. Journal of Fluorescence, 29(5), 1265–1275. https://doi.org/10.1007/s10895-019-02440-x
  • Spackman M. A., Jayatilaka D. (2009). Hirshfeld surface analysis. CrystEngComm, 11(1), 19–32. https://doi.org/10.1039/B818330A
  • Spackman M. A., McKinnon J. J., Jayatilaka D. (2008). Electrostatic potentials mapped on Hirshfeld surfaces provide direct insight into intermolecular interactions in crystals. CrystEngComm, 10(4), 377–388. https://doi.org/10.1039/B715227B
  • Tan S. L., Jotani M. M., Tiekink E. R. T. (2019). Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallographica Section E Crystallographic Communications, 75(3), 308–318. https://doi.org/10.1107/S2056989019001129
  • Toy M., Tanak H., Şenöz H. (2020). Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. Journal of Molecular Structure, 1213, 128178. https://doi.org/10.1016/j.molstruc.2020.128178
Year 2020, Volume: 7 Issue: 2, 83 - 91, 31.12.2020
https://doi.org/10.48138/cjo.803919

Abstract

Project Number

-

References

  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Hirshfeld F. L. (1977). Bonded-atom fragments for describing molecular charge densities. Theoretica Chimica Acta, 44(2), 129–138. https://doi.org/10.1007/BF00549096
  • Jayatilaka D., & Grimwood D. J. (2003). Tonto: A Fortran Based Object-Oriented System for Quantum Chemistry and Crystallography. In P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra, & A. Y. Zomaya (Eds.), Computational Science — ICCS 2003 (Vol. 2660, pp. 142–151). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44864-0_15
  • Kirste B. (2016). Applications of Density Functional Theory to Theoretical Organic Chemistry. Chemical Sciences Journal, 7(2). https://doi.org/10.4172/2150-3494.1000127
  • Turner M. J., McKinnon J. J., Wolff S. K., Grimwood D. J., Spackman P. R., Jayatilaka D., Spackman M. A., CrystalExplorer17 (2017). University of Western Australia.
  • Mackenzie C. F., Spackman P. R., Jayatilaka D., Spackman M. A. (2017). CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ, 4(5), 575–587. https://doi.org/10.1107/S205225251700848X
  • Madan Kumar S. (2019). 3D energy frameworks of dimethylbenzophenone tetramorphs. Heliyon, 5(2), e01209. https://doi.org/10.1016/j.heliyon.2019.e01209
  • McKinnon J. J., Jayatilaka D., Spackman M. A. (2007). Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications, (37), 3814. https://doi.org/10.1039/b704980c
  • Özbek F. E., Sertçelik M., Yüksek M., Uğurlu G., Tonbul A. M., Necefoğlu H., Hökelek T. (2019). Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. Journal of Fluorescence, 29(5), 1265–1275. https://doi.org/10.1007/s10895-019-02440-x
  • Spackman M. A., Jayatilaka D. (2009). Hirshfeld surface analysis. CrystEngComm, 11(1), 19–32. https://doi.org/10.1039/B818330A
  • Spackman M. A., McKinnon J. J., Jayatilaka D. (2008). Electrostatic potentials mapped on Hirshfeld surfaces provide direct insight into intermolecular interactions in crystals. CrystEngComm, 10(4), 377–388. https://doi.org/10.1039/B715227B
  • Tan S. L., Jotani M. M., Tiekink E. R. T. (2019). Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallographica Section E Crystallographic Communications, 75(3), 308–318. https://doi.org/10.1107/S2056989019001129
  • Toy M., Tanak H., Şenöz H. (2020). Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. Journal of Molecular Structure, 1213, 128178. https://doi.org/10.1016/j.molstruc.2020.128178
There are 16 citations in total.

Details

Primary Language English
Subjects Environmental Sciences
Journal Section Caucasian Journal of Science
Authors

Füreya Elif Özbek This is me 0000-0001-6376-4161

Mustafa Sertçelik 0000-0001-7919-7907

Mustafa Yüksek 0000-0003-2169-1827

Project Number -
Publication Date December 31, 2020
Submission Date October 2, 2020
Acceptance Date December 14, 2020
Published in Issue Year 2020 Volume: 7 Issue: 2

Cite

APA Özbek, F. E., Sertçelik, M., & Yüksek, M. (2020). Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II). Caucasian Journal of Science, 7(2), 83-91. https://doi.org/10.48138/cjo.803919

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