Araştırma Makalesi
BibTex RIS Kaynak Göster

Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II)

Yıl 2020, Cilt: 7 Sayı: 2, 83 - 91, 31.12.2020
https://doi.org/10.48138/cjo.803919

Öz

Hirshfeld surface analysis has been widely used in crystallography in recent years to investigate intermolecular interactions and to determine the contribution of these interactions to the crystal lattice. Fingerprint plots, which are given as color plots, present quantitative results of the types of intermolecular interactions in a molecule. In this study, we investigated intermolecular interactions and energy frameworks of Zn(II) 4-chlorophenylacetate containing pyridine 4-carboxamide complex by using CrystalExplorer program. Intermolecular interactions of the complex were determined using Hirshfeld Surface analysis. The intermolecular interaction energies of the complex were calculated using CE-HF/3-21G, CE-HF/6-31G (d), CE-HF/6-31G (d,p), CE-MP2/3-21G, CE-MP2/6-31G (d), CE-MP2/6-31G (d,p), CE-B3LYP/3-21G, CE-B3LYP/6-31G (d), CE-B3LYP/6-31G (d,p), CE-DFT/3-21G, CE-DFT/6-31G (d) and CE-DFT/6-31G (d,p) energy models that involved in CrystalExplorer (CE) program. The estimation of the intermolecular interactions and energies of the complexes is very important for the classification and investigation of their application areas.

Destekleyen Kurum

-

Proje Numarası

-

Teşekkür

The authors would like to thank Ali Murat Tonbul for his contributions.

Kaynakça

  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Hirshfeld F. L. (1977). Bonded-atom fragments for describing molecular charge densities. Theoretica Chimica Acta, 44(2), 129–138. https://doi.org/10.1007/BF00549096
  • Jayatilaka D., & Grimwood D. J. (2003). Tonto: A Fortran Based Object-Oriented System for Quantum Chemistry and Crystallography. In P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra, & A. Y. Zomaya (Eds.), Computational Science — ICCS 2003 (Vol. 2660, pp. 142–151). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44864-0_15
  • Kirste B. (2016). Applications of Density Functional Theory to Theoretical Organic Chemistry. Chemical Sciences Journal, 7(2). https://doi.org/10.4172/2150-3494.1000127
  • Turner M. J., McKinnon J. J., Wolff S. K., Grimwood D. J., Spackman P. R., Jayatilaka D., Spackman M. A., CrystalExplorer17 (2017). University of Western Australia.
  • Mackenzie C. F., Spackman P. R., Jayatilaka D., Spackman M. A. (2017). CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ, 4(5), 575–587. https://doi.org/10.1107/S205225251700848X
  • Madan Kumar S. (2019). 3D energy frameworks of dimethylbenzophenone tetramorphs. Heliyon, 5(2), e01209. https://doi.org/10.1016/j.heliyon.2019.e01209
  • McKinnon J. J., Jayatilaka D., Spackman M. A. (2007). Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications, (37), 3814. https://doi.org/10.1039/b704980c
  • Özbek F. E., Sertçelik M., Yüksek M., Uğurlu G., Tonbul A. M., Necefoğlu H., Hökelek T. (2019). Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. Journal of Fluorescence, 29(5), 1265–1275. https://doi.org/10.1007/s10895-019-02440-x
  • Spackman M. A., Jayatilaka D. (2009). Hirshfeld surface analysis. CrystEngComm, 11(1), 19–32. https://doi.org/10.1039/B818330A
  • Spackman M. A., McKinnon J. J., Jayatilaka D. (2008). Electrostatic potentials mapped on Hirshfeld surfaces provide direct insight into intermolecular interactions in crystals. CrystEngComm, 10(4), 377–388. https://doi.org/10.1039/B715227B
  • Tan S. L., Jotani M. M., Tiekink E. R. T. (2019). Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallographica Section E Crystallographic Communications, 75(3), 308–318. https://doi.org/10.1107/S2056989019001129
  • Toy M., Tanak H., Şenöz H. (2020). Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. Journal of Molecular Structure, 1213, 128178. https://doi.org/10.1016/j.molstruc.2020.128178
Yıl 2020, Cilt: 7 Sayı: 2, 83 - 91, 31.12.2020
https://doi.org/10.48138/cjo.803919

Öz

Proje Numarası

-

Kaynakça

  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Caracelli I., Zukerman-Schpector J., Schwab R. S., Silva E. M. da, Jotani M. M., Tiekink E. R. T. (2019). 2-Methyl-4-(4-nitrophenyl)but-3-yn-2-ol: crystal structure, Hirshfeld surface analysis and computational chemistry study. Acta Crystallographica Section E Crystallographic Communications, 75(8), 1232–1238. https://doi.org/10.1107/S2056989019010284
  • Etse K. S., Lamela L. C., Zaragoza G., Pirotte B. (2020). Synthesis, crystal structure, Hirshfeld surface and interaction energies analysis of 5-methyl-1,3-bis(3-nitrobenzyl)pyrimidine-2,4(1H,3H)-dione. European Journal of Chemistry, 11(2), 91–99. https://doi.org/10.5155/eurjchem.11.2.91-99.1973
  • Hirshfeld F. L. (1977). Bonded-atom fragments for describing molecular charge densities. Theoretica Chimica Acta, 44(2), 129–138. https://doi.org/10.1007/BF00549096
  • Jayatilaka D., & Grimwood D. J. (2003). Tonto: A Fortran Based Object-Oriented System for Quantum Chemistry and Crystallography. In P. M. A. Sloot, D. Abramson, A. V. Bogdanov, Y. E. Gorbachev, J. J. Dongarra, & A. Y. Zomaya (Eds.), Computational Science — ICCS 2003 (Vol. 2660, pp. 142–151). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44864-0_15
  • Kirste B. (2016). Applications of Density Functional Theory to Theoretical Organic Chemistry. Chemical Sciences Journal, 7(2). https://doi.org/10.4172/2150-3494.1000127
  • Turner M. J., McKinnon J. J., Wolff S. K., Grimwood D. J., Spackman P. R., Jayatilaka D., Spackman M. A., CrystalExplorer17 (2017). University of Western Australia.
  • Mackenzie C. F., Spackman P. R., Jayatilaka D., Spackman M. A. (2017). CrystalExplorer model energies and energy frameworks: extension to metal coordination compounds, organic salts, solvates and open-shell systems. IUCrJ, 4(5), 575–587. https://doi.org/10.1107/S205225251700848X
  • Madan Kumar S. (2019). 3D energy frameworks of dimethylbenzophenone tetramorphs. Heliyon, 5(2), e01209. https://doi.org/10.1016/j.heliyon.2019.e01209
  • McKinnon J. J., Jayatilaka D., Spackman M. A. (2007). Towards quantitative analysis of intermolecular interactions with Hirshfeld surfaces. Chemical Communications, (37), 3814. https://doi.org/10.1039/b704980c
  • Özbek F. E., Sertçelik M., Yüksek M., Uğurlu G., Tonbul A. M., Necefoğlu H., Hökelek T. (2019). Synthesis and Crystallographic, Absorption and Emission Studies of 4-Pyridine Carboxamide of Zn(II) 4-Chlorophenylacetate. Journal of Fluorescence, 29(5), 1265–1275. https://doi.org/10.1007/s10895-019-02440-x
  • Spackman M. A., Jayatilaka D. (2009). Hirshfeld surface analysis. CrystEngComm, 11(1), 19–32. https://doi.org/10.1039/B818330A
  • Spackman M. A., McKinnon J. J., Jayatilaka D. (2008). Electrostatic potentials mapped on Hirshfeld surfaces provide direct insight into intermolecular interactions in crystals. CrystEngComm, 10(4), 377–388. https://doi.org/10.1039/B715227B
  • Tan S. L., Jotani M. M., Tiekink E. R. T. (2019). Utilizing Hirshfeld surface calculations, non-covalent interaction (NCI) plots and the calculation of interaction energies in the analysis of molecular packing. Acta Crystallographica Section E Crystallographic Communications, 75(3), 308–318. https://doi.org/10.1107/S2056989019001129
  • Toy M., Tanak H., Şenöz H. (2020). Experimental and DFT computational studies of novel 3-(p-cyanophenyl)-5-(o,m,p-nitrophenyl)-5-phenylformazans. Journal of Molecular Structure, 1213, 128178. https://doi.org/10.1016/j.molstruc.2020.128178
Toplam 16 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Çevre Bilimleri
Bölüm Caucasian Journal of Science
Yazarlar

Füreya Elif Özbek Bu kişi benim 0000-0001-6376-4161

Mustafa Sertçelik 0000-0001-7919-7907

Mustafa Yüksek 0000-0003-2169-1827

Proje Numarası -
Yayımlanma Tarihi 31 Aralık 2020
Gönderilme Tarihi 2 Ekim 2020
Kabul Tarihi 14 Aralık 2020
Yayımlandığı Sayı Yıl 2020 Cilt: 7 Sayı: 2

Kaynak Göster

APA Özbek, F. E., Sertçelik, M., & Yüksek, M. (2020). Hirshfeld Surface Analysis and Interaction Energy Calculations of Bis(4-chlorophenylacetate)bis(pyridine-4-carboxamide)Zinc(II). Caucasian Journal of Science, 7(2), 83-91. https://doi.org/10.48138/cjo.803919

dizin1.png dizin2.png dizin3.png  dizin5.png dizin6.png dizin7.png