Research Article

Theoretical Studies of the Molecular Structure, Conformational and Nonlinear Optical Properties of (2-Benzyloxy-Pyrimidin-5-Yl) Boronic Acid

Volume: 6 July 25, 2019
  • Guventurk Ugurlu
EN

Theoretical Studies of the Molecular Structure, Conformational and Nonlinear Optical Properties of (2-Benzyloxy-Pyrimidin-5-Yl) Boronic Acid

Abstract

In this study, ab initio Hartree-Fock (HF) and Density Functional Theory (DFT), using Becke-3–Lee–Yang–Parr (B3LYP) hybrid density functional, calculations have been performed to characterize the ground state geometrical energy, the dipole moment (μ), polarizability (α), the hyperpolarizability (β) of (2-benzyloxy-pyrimidin-5-yl) boronic acid molecule. The 1H and 13C NMR chemical shifts were calculated by GIAO approach by using B3LYP/6-311+G (2d, p) and HF/6-31G (d) level of theory. The potential energy surface of title molecule has been investigated as a function dihedral angles (C3-B-O1-H1 and C3-B-O2-H2). Also,  using the calculated the highest occupied molecular orbital energies (EHOMO) and the lowest unoccupied molecular orbital energies (ELUMO), electronic properties of the studied molecules such as energy gap ∆Eg (ELUMO-EHOMO), chemical potential μ, electrophilic index ω, ionization potential IP, electron affinity EA, electronegativity χ, molecular softness S, molecular hardness η were obtained. The dipole moment title molecule are calculated at 1.20 Debye at DFT/B3LYP/6-311++G (d, p) and 1.58 Debye at HF/6-311++G (d, p), respectively. Structural parameters of title molecules compared with the experimental data in the literature. All computational studies have been performed with the Gaussian 09W program. 

Keywords

References

  1. Bebeda, A.W., van Ree, T. (2015) Conformational performance and electrochemical performance of ethyleneoxy phenyl boronate electrolyte addivites. Arab. J.Sci. Eng 40 28141-2851 Becke, A. D. (1988) Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38(6), 3098–3100 Becke, A. D., 1993. Density-Functional Thermochemistry .3. The Role of Exact Exchange. J. Chem. Phys., 98 (7): 5648-5652 Clapham, K.M., Smith, A.E., Batsanov, A.S., McIntyre, L., Pountney, A ., Bryce, M.R., & Tarbit, B. (2007) 3-New pyrimidylboronic acids and functionalized heteroarylpyrimidines by Suzuki cross-coupling reactions. European Journal Of Organıc Chemıstry 34,5712-5716 Dennington, R., Keith T., Millam, J. (2009). Semichem Inc., GaussView, Version 5, Shawnee Mission KS, Durka, K., Klis, T., & Serwatowski, J. (2014) Crystal structure of (2-benzyloxypyrimidin-5-yl)boronic acid, Acta Cryst. E70, o1259–o1260 Durka, K., Katarzyna Jarzembska., K. N., Kamiński ,R., Luliński, S., Serwatowski, J.,& Woźniak, K., (2012) Structural and Energetic Landscape of Fluorinated 1,4-Phenylenediboronic Acids.Cryst.Growth Des. 12 3720-373 Francl, M.M., Pietro, W.J., Hehre, W.J., Binkley, J.S., Gordon, M.S., DeFrees, D.J., Pople, J.A, (1982). Self‐consistent molecular orbital methods. XXIII. A polarization‐type basis set for second‐row elements. Chem. Phys, 77 3654-3665 Frisch M J, Trucks G W, Schlegel H B, Scuseria G E, Robb M A, Cheeseman J R, Scalmani G, Barone V, Mennucci B, Petersson G A, Nakatsuji H, Caricato M, Li X, Hratchian H P, Izmaylov A F, Bloino J, Zheng G, Sonnenberg J L, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida,M, Nakajima T, Honda Y, Kitao O, Nakai H, Vreven T, Montgomery J A, Vreven T J, Peralta J E, Ogliaro F, Bearpark M, Heyd J. J, Brothers E, Kudin N, Staroverov V N, Kobayashi R, Normand J, Raghavachari K, Rendell A, Burant J C, Iyengar S S, Tomasi J, Cossi M, Rega N, Millam J M, Klene,M, Knox J E, Cross J B, Bakken V, Adamo C, Jaramillo J, Gomperts R, Stratmann R E, Yazyev O, Austin A J, Cammi R, Pomelli C J, Ochterski W, Martin L R, Morokuma K, Zakrzewski V G, Voth G A, Salvador P, Dannenberg J J, Dapprich S, Daniels A D, Farkas O, Foresman J B, Ortiz J V, Cioslowski J, Fox D J, 2009. Gaussian Inc., (Wallingford, CT). Krishnan, R., Binkley, J. S., Seeger, R. and Pople, J. A, (1980). Self-consistent molecular-orbital methods. 20. basis set for correlated wave-functions. J. Chem.Phys, 72: 650–654. Lee, C. T., Yang, W. T., Parr, R. G. (1988). Development of the colle-salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785-789. Liao, T. K., Podrebarac, E. G., &Cheng C.C. (1964) Boron-Substituted Pyrimidines J. Am. Chem. Soc.1869-1870 Lulisnki, S., Madura, I., Serwatowski, J., Szatyłowicz, H., & Zachara, J, (2007) A tautomeric equilibrium between functionalized 2-formylphenylboronic acids and corresponding 1,3-dihydro-1,3-dihydroxybenzo[c][2,1]oxaboroles New J. Chem., 31, 144-154 Maly, K. E., Maris, T., and Wuest,&J. D. (2006) wo-dimensional hydrogen-bonded networks in crystals of diboronic acids Ctyst Eng Comm. 8, 33-35 McLean, A.D., Chandler, G.S. (1980). Contracted Gaussian basis sets for molecular calculations. I. Second row atoms, Z= 11–18. J Chem Phys, 72:5639–5648 Moller, C., Plesset, M. S. (1934). Note on an approximation treatment for many- electron systems. Phys. Rev., 46 618-622. Rassolov, V-A., Ratner, M-A., Pople ,J-A., Redfern, P-C., Curtiss ,L-A., (2001). 6–31G* basis set for third-row atoms. J Comp Chem., 22:976–984. Rettig, S.J., Trotte, C.J. (1977) Crystal and molecular structure of phenylboronic acid. Can. J. Chem. Vol. 55. 3071-3075 Saygili, N., Batsanova A. S., &Bryce, M., R. (2004)5-Pyrimidylboronic acid and 2-methoxy-5-pyrimidylboronic acid: new heteroarylpyrimidine derivatives via Suzuki cross-coupling reactions Organic & Biomolecular Chemistry Issue 6, 852-857 Sowmya, D. V., Teja, G. L., Padmaja, A., Prasad, V. K., Padmavathi, V, (2018) Green approach for the synthesis of thiophenyl pyrazoles and isoxazoles by adopting 1,3-dipolar cycloaddition methodology and their antimicrobial activity. Eur. J. Med. Chem. 143; 891-898. Wang, B., Qu, Q.T., Xia, Q., Wu, Y.P.,Gan, C.L., van Ree, T. (2008) Effects of 3,5- bis(trifluoromethyl)benzeneboronic acid as an additive on electrochemical performance of propylene carbonate based electrolytes for lithium ion batteries. Electrochim.Acta.54,816-820

Details

Primary Language

English

Subjects

Engineering

Journal Section

Research Article

Authors

Guventurk Ugurlu This is me

Publication Date

July 25, 2019

Submission Date

June 20, 2019

Acceptance Date

-

Published in Issue

Year 2019 Volume: 6

APA
Ugurlu, G. (2019). Theoretical Studies of the Molecular Structure, Conformational and Nonlinear Optical Properties of (2-Benzyloxy-Pyrimidin-5-Yl) Boronic Acid. The Eurasia Proceedings of Science Technology Engineering and Mathematics, 6, 101-105. https://izlik.org/JA67WS57NG