The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey

Turhan Turan; Hakan Işıdan

doi:10.35864/evmd.513442

The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey

Öz

A total of 127 stool samples (rectal swab) from diarrheic calves, up to one mouth of age, were collected

during one year period (2014-16) from three cities (Sivas, Malatya and Elazığ) located central Turkey. 432 bp partial

sequence of Nsp1ab gene were amplified. The PCR amplicons were purified and sequenced and deposited to GenBank.

Sequence alignment and phylogenetic analysis being based on partial nucleotide sequences of Nsp1ab gene was constructed.

As a result of RT-PCR study, we found that the 3.15% of fecal samples (4/127) were positive for diarrhea calves

from Turkey. The neighbor-joinning tree of partial sequence of Nsp1ab gene (ORF1a) indicated that strains were substituted

under three distinct lineage. None of our strains belonged to the Neuro1 lineage (lineage 3) of Bovine astrovirus

which was isolated from bovine with neurological symptoms. On the other hand, while BAstVHT1-TUR strain was

substituted under lineage 1a, the other novel starts were lineage 2. While the identity of analyzed sequences varies from

51.1 to 100%, novel strains were calculated between 75.8 to 100 % each other. As a result, we report the first detection

and phylogenetic analysis of Bovine astrovirus from Turkey.

Anahtar Kelimeler

Bovine astrovirus,calf,phylogenetic analysis,Turkey

Kaynakça

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Ayrıntılar

Birincil Dil

İngilizce

Konular

-

Bölüm

Araştırma Makalesi

Yazarlar

Turhan Turan Bu kişi benim

Hakan Işıdan ^*

Yayımlanma Tarihi

30 Aralık 2018

Gönderilme Tarihi

15 Temmuz 2018

Kabul Tarihi

7 Ağustos 2018

Yayımlandığı Sayı

Yıl 2018 Cilt: 29 Sayı: 2

DOI

https://doi.org/10.35864/evmd.513442

IZ

https://izlik.org/JA43WY54YS

Kaynak Göster

RIS / Bibtex

APA

Turan, T., & Işıdan, H. (2018). The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Veteriner Mikrobiyoloji Dergisi, 29(2), 104-110. https://doi.org/10.35864/evmd.513442

AMA

1.Turan T, Işıdan H. The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Vet. Mik. Derg. 2018;29(2):104-110. doi:10.35864/evmd.513442

Chicago

Turan, Turhan, ve Hakan Işıdan. 2018. “The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey”. Etlik Veteriner Mikrobiyoloji Dergisi 29 (2): 104-10. https://doi.org/10.35864/evmd.513442.

EndNote

Turan T, Işıdan H (01 Aralık 2018) The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Veteriner Mikrobiyoloji Dergisi 29 2 104–110.

IEEE

[1]T. Turan ve H. Işıdan, “The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey”, Etlik Vet. Mik. Derg., c. 29, sy 2, ss. 104–110, Ara. 2018, doi: 10.35864/evmd.513442.

ISNAD

Turan, Turhan - Işıdan, Hakan. “The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey”. Etlik Veteriner Mikrobiyoloji Dergisi 29/2 (01 Aralık 2018): 104-110. https://doi.org/10.35864/evmd.513442.

JAMA

1.Turan T, Işıdan H. The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Vet. Mik. Derg. 2018;29:104–110.

MLA

Turan, Turhan, ve Hakan Işıdan. “The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey”. Etlik Veteriner Mikrobiyoloji Dergisi, c. 29, sy 2, Aralık 2018, ss. 104-10, doi:10.35864/evmd.513442.

Vancouver

1.Turhan Turan, Hakan Işıdan. The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey. Etlik Vet. Mik. Derg. 01 Aralık 2018;29(2):104-10. doi:10.35864/evmd.513442

The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey

The First Detection and Phylogenetic Analysis of Bovine Astrovirus from Diarrheic Calves in Turkey

Öz

Anahtar Kelimeler

Kaynakça

Ayrıntılar

Birincil Dil

Konular

Bölüm

Yazarlar

Yayımlanma Tarihi

Gönderilme Tarihi

Kabul Tarihi

Yayımlandığı Sayı

DOI

IZ

Kaynak Göster

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