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Proteomics and Area of Usage in Food Industry (Turkish with English Abstract)

Year 2012, Volume: 37 Issue: 5, 303 - 308, 01.10.2012

Abstract

Proteomics is analyzing the total amount of proteins expressed in a certain time point, in an organism, a tissue or a cell, by using protein separation and identification techniques. From 1994, proteomics was first introduced by Marc. R. Wilkins, to now proteomics advanced and begins to use in several areas instead of clinical medicine. Food industry is one of these areas. Proteomics is a powerful tool used in food quality, food safety, genetically modified organisms, effects of storage and packaging on foods and food allergens researches. The aim of this review is to define proteomics and proteomics techniques and usage in food industry area.

References

  • Belitz HD, Grosch W, Schieberle P. 2004. Food Chemistry. Springer Publishing, Berlin, 8-92 p.
  • Patterson SD, Aebersold RH. 2003. Proteomics: the first decade and beyond. Nat Genet, 33, 311-323.
  • Peng J, Gygi SP. 2001. Proteomics: the move to mixtures. J Mass Spectrom, 36 (10), 1083-1091.
  • Hochstrasser DF, Sanchez JC, Appel RD. 2002. Proteomics and its trends facing nature's complexity. Proteomics, 2 (7), 807-812.
  • Tyers M, Mann M. 2003. From genomics to proteomics. Nature, 422, 193-197.
  • Jürgen C, Matthias M. 2011. Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem, 80, 273-99.
  • Kellner R. 2000. Proteomics: concepts and perspectives. J Anal Chem, 366, 517-524.
  • Banks RE, Dunn MJ, Hochstrasser DF, Sanchez J, Blackstock W, Pappin DJ, Selby PJ. 2000. Proteomics: new perspectives, new biomedical opportunities. Lancet, 356, 1749-56.
  • Pandey A, Mann M. 2000. Proteomics to study genes and genomes. Nature, 405, 837-846.
  • Chich JF, David O, Villers F, Schaeffer B, Lutomski D, Huet SJ. 2007. Statistics for proteomics: experimental design and 2-DE differential analysis. J Chromatogr B, 849, 261-272.
  • Timms JF, Cramer R. 2008. Difference gel electrophoresis. Proteomics, 8, 4886-4897.
  • Rabilloud T, Chevallet M, Luche S, Lelong C. 2010. Two-dimensional gel electrophoresis in proteomics: past, present and future. J Proteom, 73, 2064-2077.
  • Hoogland C, Sanchez JC, Tonella L, Binz PA, Bairoch A, Hochstrasser DF, Appel RD. 2000. The 1999 SWISS-2DPAGE database update. Nucleic Acids Res, 28 (1), 286-288.
  • Mallick P, Kuster B. 2010. Proteomics: a pragmatic perspective. Nat Biotechnol, 28(7), 695-709.
  • Ruedi A, Matthias M. 2003. Mass spectrometry -based proteomics. Nature, 422, 198-207.
  • Armirotti A, Damonte G. 2010. Achievements and perspectives of top-down proteomics. Proteomics, 10, 3566-3576.
  • Jorrín JV, Maldonado AM, Castillejo MA. 2007. Plant proteome analysis: a 2006 update. Proteomics, 7, 2947-2962.
  • Ow SY, Salim M, Noirel J, Evans C, Rehman I, Wright PC. 2009. ITRAQ underestimation in simple and complex mixtures:"The good, the bad and the ugly". J Proteome Res, 8, 5347-5355.
  • Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC. 2010. Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics. Anal Chem, 82, 8696-8702.
  • Walther TC, Mann M. 2010. Mass spectrometry -based proteomics in cell biology. Teo Cell Biol,190 (4), 491-500.
  • Costa AIA, Jongen WMF. 2006. New insights into consumer-led food product development. Trends Food Sci Technol, 17, 457-465.
  • Han JZ, Wang YB. 2008. Proteomics: present and future in food science and technolgy. Food Sci Technol Int, 19, 26-30.
  • Picard B, Berri C, Lefaucheur L, Molette C, Sayd T, Terlouw C. 2010. Skeletal muscle proteomics in livestock production. Brief Funct Genomics, 9, 259-278.
  • Guy PA, Fenaille F. 2006. Contribution of mass spectrometry to assess quality of milk-based products. Mass Spectrom Rev, 25, 290-326.
  • Emøke B, Marianne D, Kristin H, Elisabetta G, Ingrid M. 2011. Farm animal proteomics. J Proteomics, 74, 282-293.
  • Wimmers K, Murani E, Ponsuksili S. 2010. Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs. Brief Funct Genomics, 9, 251-8.
  • Doherty MK, McLean L, Hayter JR, Pratt JM, Robertson DH, El Shafei A. 2004. The proteome of chicken skeletal muscle: changes in soluble protein expression during growth in a layer strain. Proteomics, 4, 2082-2093.
  • Lametsch R, Bendixen E. 2001. Proteome analysis applied to meat science: characterizing post mortem changes in porcine muscle. J Agric Food Chem, 49, 4531-4537.
  • Zapata I, Zerby HN, Wick M. 2009. Functional proteomic analysis predicts beef tenderness and the tenderness differential. J Agric Food Chem, 57, 4956-4963.
  • O’Donnella R, Holland JW, Deeth HC, Alewood P. 2004. Milk proteomics. Int Dairy J, 14, 1013-1023.
  • Roncada P, Piras C, Soggiu A, Turk R, Urbani A, Bonizzi L. 2012. Farm animal milk proteomics. J Prot, Baskida.
  • Guarino C, Fuselli F, La MA, Longo L, Faberi A, Marianella RM. 2010. Peptidomic approach, based on liquid chromatography/electrospray ionization tandem mass spectrometry, for detecting sheep's milk in goat's and cow's cheeses. Rapid Commun Mass Spectrom, 24, 705-713.
  • Manso MA, Le´onil J, Jan G, Gagnaire V. 2005. Application of proteomics to the characterisation of milk and dairy products. Int Dairy J, 15, 845-855.
  • Green MJ, Leach KA, Breen JE, Green LE, Bradley AJ. 2007. National intervention study of mastitis control in dairy herds in England and Wales. Vet Rec, 160, 287-93.
  • Omana DA, Liang Y, Kav NV, Wu J. 2011. Proteomic analysis of egg white proteins during storage. Proteomics, 11, 144-153.
  • González-Buitrago JM, Ferreira L, Isidoro García M, Sanz C, Lorente F, Dávila I. 2007. Proteomic approaches for identifying new allergens and diagnosing allergic diseases. Clinica Chimica Acta, 385, 21-27.
  • Nowak-Wegrzyn A, Sampson HA. 2011. Future therapies for food allergies. J Allergy Clin Immunol, 127(3), 558-573.
  • De Angelis M, Di Cagno R, Minervini F, Rizzello CG, Gobbetti M. 2010. Two-dimensional electrophoresis and IgE mediated food allergy. Electrophoresis, 31, 2126-2136.
  • Mamone G, Picariello G, Caira S, Addeo F, Ferranti P. 2009. Analysis of food proteins and peptides by mass spectrometry-based techniques. J Chromatogr A, 1216,7130-7142.
  • Monaci L, Visconti A. 2009. Mass spectrometry -based proteomics methods for analysis of food allergens. Trend Anal Chem, 28(5), 581-591.
  • Picariello G, Mamone G, Addeo F, Ferranti P. 2011. The frontiers of mass spectrometry-based techniques in food allergenomics. J Chromatogr A, 1218, 7386-7398.
  • Rodrigues PM, Silva TS, Dias J, Jessen F. 2012. Proteomics in aquaculture: applications and trends. J Prot, Bask›da.
  • Forne I, Abian J, Cerda J. 2010. Fish proteome analysis: Model organisms and non-sequenced species. Proteomics, 10, 858-872.
  • Carbonaro M. 2004. Proteomics: present and future in food quality evaluation. Trends Food Sci Technol, 15, 209-216.
  • Van Der Werf MJ, Schuren FHJ, Bijlsma S, Tas AC, Van Ommen B. 2001. Nutrigenomics: application of genomics technologies in nutritional sciences and food technology. J Food Sci, 66(6), 772-780.
  • O’Flaherty S, Klaenhammer TR. 2011. The impact of omic technologies on the study of food microbes. Annu Rev Food Sci Technol, 2, 353-371.
  • Panchaud A, Affolter M, Kussmann M. 2012. Mass spectrometry for nutritional peptidomics: How to analyze food bioactives and their health effects. J Proteom, Baskida.
  • Kussmann M, Panchaud A, Affolter M. 2010. Proteomics in nutrition: status quo and outlook for biomarkers and bioactives. J Proteome Res, 9, 4876-4887.
  • D’Alessandro A, Zolla L. 2012. We are what we eat: food safety and proteomics. J Proteome Res, 11, 26-36.
  • Pedreschi R, Hertog M, Lilley KS, Nicola B. 2010. Proteomics for the food industry: Opportunities and challenges. Crit Rev Food Sci Nutr, 50:680-692.

Proteomiks ve Gıda Endüstrisinde Kullanım Alanları

Year 2012, Volume: 37 Issue: 5, 303 - 308, 01.10.2012

Abstract

Proteomiks, bir organizma, doku veya hücrede herhangi bir anda bulunan proteinlerin tümünün, geniş çaplı protein ayırma ve tanımlama teknikleri kullanılarak analiz edilmesidir. 1994’te Avustralyalı araştırmacı Marc. R. Wilkins tarafından ortaya konmasının ardından günümüze kadar büyük gelişme göstererek sadece tıpta değil birçok alanda kullanılmaya başlanmıştır. Gıda endüstrisi de bu alanlardan biridir. Proteomiks, gıda kalitesi, gıda güvenliği, genetiği değiştirilmiş gıdalar, depolama ve paketleme gibi işlemlerin gıdalar üzerine etkileri, gıda alerjenleri gibi konularda yapılan araştırmalarda tercih edilen bir yöntem haline gelmiştir. Bu derlemede proteomiksin ne olduğu, nasıl uygulandığı ve gıda endüstrisinde hangi alanlarda kullanıldığı hakkında genel bilgiler vermek amaçlanmıştır.

References

  • Belitz HD, Grosch W, Schieberle P. 2004. Food Chemistry. Springer Publishing, Berlin, 8-92 p.
  • Patterson SD, Aebersold RH. 2003. Proteomics: the first decade and beyond. Nat Genet, 33, 311-323.
  • Peng J, Gygi SP. 2001. Proteomics: the move to mixtures. J Mass Spectrom, 36 (10), 1083-1091.
  • Hochstrasser DF, Sanchez JC, Appel RD. 2002. Proteomics and its trends facing nature's complexity. Proteomics, 2 (7), 807-812.
  • Tyers M, Mann M. 2003. From genomics to proteomics. Nature, 422, 193-197.
  • Jürgen C, Matthias M. 2011. Quantitative, high-resolution proteomics for data-driven systems biology. Annu Rev Biochem, 80, 273-99.
  • Kellner R. 2000. Proteomics: concepts and perspectives. J Anal Chem, 366, 517-524.
  • Banks RE, Dunn MJ, Hochstrasser DF, Sanchez J, Blackstock W, Pappin DJ, Selby PJ. 2000. Proteomics: new perspectives, new biomedical opportunities. Lancet, 356, 1749-56.
  • Pandey A, Mann M. 2000. Proteomics to study genes and genomes. Nature, 405, 837-846.
  • Chich JF, David O, Villers F, Schaeffer B, Lutomski D, Huet SJ. 2007. Statistics for proteomics: experimental design and 2-DE differential analysis. J Chromatogr B, 849, 261-272.
  • Timms JF, Cramer R. 2008. Difference gel electrophoresis. Proteomics, 8, 4886-4897.
  • Rabilloud T, Chevallet M, Luche S, Lelong C. 2010. Two-dimensional gel electrophoresis in proteomics: past, present and future. J Proteom, 73, 2064-2077.
  • Hoogland C, Sanchez JC, Tonella L, Binz PA, Bairoch A, Hochstrasser DF, Appel RD. 2000. The 1999 SWISS-2DPAGE database update. Nucleic Acids Res, 28 (1), 286-288.
  • Mallick P, Kuster B. 2010. Proteomics: a pragmatic perspective. Nat Biotechnol, 28(7), 695-709.
  • Ruedi A, Matthias M. 2003. Mass spectrometry -based proteomics. Nature, 422, 198-207.
  • Armirotti A, Damonte G. 2010. Achievements and perspectives of top-down proteomics. Proteomics, 10, 3566-3576.
  • Jorrín JV, Maldonado AM, Castillejo MA. 2007. Plant proteome analysis: a 2006 update. Proteomics, 7, 2947-2962.
  • Ow SY, Salim M, Noirel J, Evans C, Rehman I, Wright PC. 2009. ITRAQ underestimation in simple and complex mixtures:"The good, the bad and the ugly". J Proteome Res, 8, 5347-5355.
  • Collier TS, Sarkar P, Franck WL, Rao BM, Dean RA, Muddiman DC. 2010. Direct comparison of stable isotope labeling by amino acids in cell culture and spectral counting for quantitative proteomics. Anal Chem, 82, 8696-8702.
  • Walther TC, Mann M. 2010. Mass spectrometry -based proteomics in cell biology. Teo Cell Biol,190 (4), 491-500.
  • Costa AIA, Jongen WMF. 2006. New insights into consumer-led food product development. Trends Food Sci Technol, 17, 457-465.
  • Han JZ, Wang YB. 2008. Proteomics: present and future in food science and technolgy. Food Sci Technol Int, 19, 26-30.
  • Picard B, Berri C, Lefaucheur L, Molette C, Sayd T, Terlouw C. 2010. Skeletal muscle proteomics in livestock production. Brief Funct Genomics, 9, 259-278.
  • Guy PA, Fenaille F. 2006. Contribution of mass spectrometry to assess quality of milk-based products. Mass Spectrom Rev, 25, 290-326.
  • Emøke B, Marianne D, Kristin H, Elisabetta G, Ingrid M. 2011. Farm animal proteomics. J Proteomics, 74, 282-293.
  • Wimmers K, Murani E, Ponsuksili S. 2010. Functional genomics and genetical genomics approaches towards elucidating networks of genes affecting meat performance in pigs. Brief Funct Genomics, 9, 251-8.
  • Doherty MK, McLean L, Hayter JR, Pratt JM, Robertson DH, El Shafei A. 2004. The proteome of chicken skeletal muscle: changes in soluble protein expression during growth in a layer strain. Proteomics, 4, 2082-2093.
  • Lametsch R, Bendixen E. 2001. Proteome analysis applied to meat science: characterizing post mortem changes in porcine muscle. J Agric Food Chem, 49, 4531-4537.
  • Zapata I, Zerby HN, Wick M. 2009. Functional proteomic analysis predicts beef tenderness and the tenderness differential. J Agric Food Chem, 57, 4956-4963.
  • O’Donnella R, Holland JW, Deeth HC, Alewood P. 2004. Milk proteomics. Int Dairy J, 14, 1013-1023.
  • Roncada P, Piras C, Soggiu A, Turk R, Urbani A, Bonizzi L. 2012. Farm animal milk proteomics. J Prot, Baskida.
  • Guarino C, Fuselli F, La MA, Longo L, Faberi A, Marianella RM. 2010. Peptidomic approach, based on liquid chromatography/electrospray ionization tandem mass spectrometry, for detecting sheep's milk in goat's and cow's cheeses. Rapid Commun Mass Spectrom, 24, 705-713.
  • Manso MA, Le´onil J, Jan G, Gagnaire V. 2005. Application of proteomics to the characterisation of milk and dairy products. Int Dairy J, 15, 845-855.
  • Green MJ, Leach KA, Breen JE, Green LE, Bradley AJ. 2007. National intervention study of mastitis control in dairy herds in England and Wales. Vet Rec, 160, 287-93.
  • Omana DA, Liang Y, Kav NV, Wu J. 2011. Proteomic analysis of egg white proteins during storage. Proteomics, 11, 144-153.
  • González-Buitrago JM, Ferreira L, Isidoro García M, Sanz C, Lorente F, Dávila I. 2007. Proteomic approaches for identifying new allergens and diagnosing allergic diseases. Clinica Chimica Acta, 385, 21-27.
  • Nowak-Wegrzyn A, Sampson HA. 2011. Future therapies for food allergies. J Allergy Clin Immunol, 127(3), 558-573.
  • De Angelis M, Di Cagno R, Minervini F, Rizzello CG, Gobbetti M. 2010. Two-dimensional electrophoresis and IgE mediated food allergy. Electrophoresis, 31, 2126-2136.
  • Mamone G, Picariello G, Caira S, Addeo F, Ferranti P. 2009. Analysis of food proteins and peptides by mass spectrometry-based techniques. J Chromatogr A, 1216,7130-7142.
  • Monaci L, Visconti A. 2009. Mass spectrometry -based proteomics methods for analysis of food allergens. Trend Anal Chem, 28(5), 581-591.
  • Picariello G, Mamone G, Addeo F, Ferranti P. 2011. The frontiers of mass spectrometry-based techniques in food allergenomics. J Chromatogr A, 1218, 7386-7398.
  • Rodrigues PM, Silva TS, Dias J, Jessen F. 2012. Proteomics in aquaculture: applications and trends. J Prot, Bask›da.
  • Forne I, Abian J, Cerda J. 2010. Fish proteome analysis: Model organisms and non-sequenced species. Proteomics, 10, 858-872.
  • Carbonaro M. 2004. Proteomics: present and future in food quality evaluation. Trends Food Sci Technol, 15, 209-216.
  • Van Der Werf MJ, Schuren FHJ, Bijlsma S, Tas AC, Van Ommen B. 2001. Nutrigenomics: application of genomics technologies in nutritional sciences and food technology. J Food Sci, 66(6), 772-780.
  • O’Flaherty S, Klaenhammer TR. 2011. The impact of omic technologies on the study of food microbes. Annu Rev Food Sci Technol, 2, 353-371.
  • Panchaud A, Affolter M, Kussmann M. 2012. Mass spectrometry for nutritional peptidomics: How to analyze food bioactives and their health effects. J Proteom, Baskida.
  • Kussmann M, Panchaud A, Affolter M. 2010. Proteomics in nutrition: status quo and outlook for biomarkers and bioactives. J Proteome Res, 9, 4876-4887.
  • D’Alessandro A, Zolla L. 2012. We are what we eat: food safety and proteomics. J Proteome Res, 11, 26-36.
  • Pedreschi R, Hertog M, Lilley KS, Nicola B. 2010. Proteomics for the food industry: Opportunities and challenges. Crit Rev Food Sci Nutr, 50:680-692.
There are 50 citations in total.

Details

Primary Language Turkish
Journal Section Articles
Authors

Güzin İplikçioğlu Çil This is me

Publication Date October 1, 2012
Published in Issue Year 2012 Volume: 37 Issue: 5

Cite

APA Çil, G. İ. . (2012). Proteomiks ve Gıda Endüstrisinde Kullanım Alanları. Gıda, 37(5), 303-308.
AMA Çil Gİ. Proteomiks ve Gıda Endüstrisinde Kullanım Alanları. The Journal of Food. October 2012;37(5):303-308.
Chicago Çil, Güzin İplikçioğlu. “Proteomiks Ve Gıda Endüstrisinde Kullanım Alanları”. Gıda 37, no. 5 (October 2012): 303-8.
EndNote Çil Gİ (October 1, 2012) Proteomiks ve Gıda Endüstrisinde Kullanım Alanları. Gıda 37 5 303–308.
IEEE G. İ. . Çil, “Proteomiks ve Gıda Endüstrisinde Kullanım Alanları”, The Journal of Food, vol. 37, no. 5, pp. 303–308, 2012.
ISNAD Çil, Güzin İplikçioğlu. “Proteomiks Ve Gıda Endüstrisinde Kullanım Alanları”. Gıda 37/5 (October 2012), 303-308.
JAMA Çil Gİ. Proteomiks ve Gıda Endüstrisinde Kullanım Alanları. The Journal of Food. 2012;37:303–308.
MLA Çil, Güzin İplikçioğlu. “Proteomiks Ve Gıda Endüstrisinde Kullanım Alanları”. Gıda, vol. 37, no. 5, 2012, pp. 303-8.
Vancouver Çil Gİ. Proteomiks ve Gıda Endüstrisinde Kullanım Alanları. The Journal of Food. 2012;37(5):303-8.

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