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Plastik Biyodegradasyonu: Genel Sorunlar ve Biyoteknolojik Çözümler

Year 2021, , 324 - 339, 15.08.2021
https://doi.org/10.38001/ijlsb.851254

Abstract

Plastik kirliliği tüm dünyayı etkilediği gibi Türkiye’de de giderek artmakta olan çevresel bir sorundur. Plastik atıklarının uzaklaştırılması için kullanılan yöntemler yetersiz olup farklı çevresel sorunları beraberinde getirmektedir. Bu nedenle çevre dostu ve etkili bir yöntem geliştirilmelidir. Mikroorganizmaların plastik yüzeylerinde üreyebilmelerinin ve enzim aktiviteleriyle plastik biyodegradasyonu gerçekleştirebilmelerinin görülmesiyle, plastik kirliliği için mikroorganizmaların kullanılması potansiyel bir çözüm olarak görülmüştür. Birçok mikroorganizmanın plastik biyodegradasyonu gerçekleştirebildiği ve birçok enzimin biyodegradasyon süreciyle ilişkili olduğu çalışmalarla gösterilmiş olsa da plastik kirliliğine karşı biyodegradasyon etkili bir yöntem olarak kullanılamamaktadır. Biyoteknolojik yaklaşımlar ile biyodegradasyon iyileştirilerek sürecin hızlandırılması ve plastik kirliliğine karşı kullanımının yaygınlaşması amaçlanmaktadır. Bu derlemede mikroorganizmaların genel plastik biyodegradasyon mekanizmalarının yanı sıra, plastik biyodegradasyonunda görülen sorunlar ve sorunların iyileştirilmesi için biyoteknolojik yaklaşımların kullanımı ele alınmıştır. Biyodegradasyon için mikroorganizmaların bir arada kullanılması, biyosürfaktanların etkisi, genetik mühendisliği yaklaşımları, metagenomiks ve biyoinformatik yaklaşımları üzerinde durulmuştur. Önemli gelişmeler ve çalışmalara yer verilmiştir. Türkiye’de gerçekleştirilen çalışmalar ve plastik kirliliğine karşı yapılan araştırmalar da değerlendirilmiştir.

References

  • Ritchie, H. ve M. Roser, Plastic pollution. Elektronik baskı: OurWorldInData.org, 2018; Erişim adresi: https://ourworldindata.org/plastic-pollution
  • Plastics Europe, Plastics- the facts 2019. Plastics Europe, 2019; Erişim adresi: https://www. plasticseurope.org/ en/resources/publications/1804-plastics-facts-2019
  • Plastics Europe, Plastics- the facts 2020. Plastics Europe, 2020; Erişim adresi: https://www. plasticseurope.org/en/resources/publications/4312-plastics-facts-2020
  • Dave, F., COVID-19 has worsened the ocean plastic pollution problem. Elektronik baskı: ScientificAmerican, 2020; Erişim adresi: https://www.scientificamerican.com/article/covid-19-has-worsened-the-ocean-plastic-pollution-problem/
  • Drzyzga, O. ve A, Prieto, Plastic waste management, a matter for the ‘community’. Microbial Biotechnology, 2018. 12: p. 1-3; doi: 10.1111/1751-7915.13328
  • Ilyas, M., vd., Plastic waste as a significant threat to environment – a systematic literature review. Reviews on Environmental Healthy, 2018. 33(4): p. 383-406; Erişim adresi: https://www.degruyter.com/view/journals/reveh/ 33/4/article-p383.xml
  • Lou, Y., vd., Biodegradation of polyethylene and polystyrene by greater wat moth larvae ( Galleria mellonella L.) and the effect of co-diet supplementation on the core gut microbiome. Environmental Science & Technology, 2020. 54 (5): p. 2821-2831; Erişim adresi: https://pubs.acs.org/ doi/10.1021/acs.est. 9b07044
  • Yang, J., vd., Evidence of polyethylene biodegradation by bacterial strains from the guts of plastic – eating waxworms. Environmental Science & Technology, 2014. 48 (23): p. 13776-13784; Erişim adresi: https://pubs.acs.org/doi/10.1021/ es504038a
  • Sharma. I., Bioremediation techniques for polluted environment: concept, advantages, limitations, and prospects. Trace Metals in the Environment, New Approaches and Recent Advances, 2019; doi: 10.5772/intechopen.90453
  • Heidarrezaei, M., vd., Isolation and characterization of a novel bacterium from the marine environment for trichloroacetic acid bioremediation. Applied Science, 2020. 10 (13): p. 4593; doi: 10.3390/app10134593
  • Oyewusi, H. A., vd., Alternative bioremediation agents against haloacids, haloacetates and chlorpyrifos using novel halogen-degrading bacterial isolates from the hypersaline lake Tuz. Catalysts, 2020. 10 (6): p. 651; doi: 10.3390/catal10060651
  • Sheth, M. U., vd., Bioengineering a future free of marine plastic waste. Frontiers in Marine Science, 2019. 6: p.624; doi: 10.3389/fmars.2019.00624
  • Meereboer, K. W., M. Misra, A. K. Mohanty, Review of recent advances in the biodegradability of polyhydroxyalkanoate (PHA) bioplastics and their composites. Green Chemistry, 2020. 22: p.5519-5558; doi: 10.1039/d0gc01647k
  • Danso, D., J. Chow, W. Streit, Plastics: environmental and biotechnological perspectives on microbial degradation. Applied and Environmental Microbiology, 2019. 85 (19): p. e01095-19; doi: 10.1128/AEM.01095-19.
  • Fesseha H ve F. Abebe, Degradation of plastic materials using microorganisms: A review. Public Health Open Journal, 2019. 4(2): p. 57-63; doi: 10.17140/PHOJ-4-136.
  • Plastics Microbial Biodegradation Database.; Erişim Adresi: http://pmbd.genomemining.cn/home/ [Erişim tarihi: 2020]
  • Ibiene, A.A., H. O. Stanley, O. M. Immanuel, Biodegradation of polyethylene by Bacillus sp. indigenous to niger delta mangrove swamp.Nigerian Journal of Biotechnology, 2013. 26:p. 68-79; Erişim adresi: https://www.researchgate.net/publication/325451710_Biodegradation_of_polyethylene _by_Bacillus_sp_indigenous_to_the_Niger_Delta_mangrove_swamp
  • Usha, R., T. Sangeetha, M. Palaniswamy, Screening of polyethylene degrading microorganisms from garbage soil. Libyan Agriculture Research Center Journal International, 2011. 2 (4): p. 200-204; Erişim adresi: https://www.researchgate.net/publication/265408136_Screening_of_Polyethylene_ Degrading_Microorganisms_from_Garbage_Soil
  • Giacomucci, L., vd. , Polyvinyl chloride biodegradation by Pseudomonas citronellolis and Bacillus flexus [Öz]. New Biotechnology, 2019. 52: p. 35-41; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/ S1871678418301560
  • Helen, A. S., E.C. Uche ve F. S. Hamid, Screening for polypropylene degradation potential of bacteria isolated from mangrove ecosystems in peninsular malaysia. International Journal of Bioscience, Biochemistry and Bioinformatics, 2017. 7(4); doi: 10.17706/ijbbb.2017. 7.4.245-251
  • Maroof, L., vd., Identification and characterization of low density polyethylene- degrading bacteria isolated from soils of waste disposal sites. Environmental Engineering Research, 2020. 26 (3); Erişim adresi: http://eeer.org/ journal/view.php?doi=10.4491/eer.2020.167
  • Taghavi, N., N. Singhal, W. Zhuang, S. Baroutian, Degradation of plastic waste using stimulated and naturally occuring microbial strains [Öz]. Chemosphere, 2020. 263; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/S0045653520321706
  • Arıkan, E. B. ve H. D Bilgen, Investigation of fungal biodegradation of starch based bioplastic spoon wastes. Mühendislik Bilimleri ve Tasarım Dergisi, 2019. 7(2): p. 294-300; doi: 10.21923/jesd.456400
  • Ibrahim, I. N., vd., Assessment of potential plastic-degrading fungi in Jordanian habitats. TÜBİTAK, Turkish Journal of Biology,2011. 35: p. 551- 557; doi: 10.3906/biy-0901-9
  • Chaudhary, A. K. C. ve R. P Vijayakumar, Studies on biological degradation of polystyrene by pure fungal cultures [Öz]. Environment, Development and Sustainability,2020. 22: p. 4495 -4508; Öze erişilen adres: https://link.springer.com/article/10.1007/s10668-019-00394-5
  • Min, K., J. D. Cuiffi ve R. T. Mathers, Ranking environmental degradation trends of plastic marine debris based on physical properties and molecular structure. Nature Communications, 2020. 11: p.727; Erişim adresi: https://www.nature.com/articles/s41467-020-14538-z
  • Purohit, J., A. Chattopadhyay ve B. Teli, Metagenomic exploration of plastic degrading microbes for biotechnological application. Current Genomics, 2020. 21(4): p.253-270; doi: 10.2174/1389202921999200525155711
  • Esan, E. O., L. Abbey ve S. Yurgel, Exploring the long-term effect of plastic on compost microbiome. PLoS ONE, 2019. 14(3): p.e0214376; Erişim adresi: https://journals.plos. org/plosone/article?id=10.1371/journal.pone.0214376
  • Meyer-Cifuentes, I. E.,…, B. Öztürk, Synergistic biodegradation of aromatic- aliphatic copolyester plastic by marine microbial consortium. Nature Communications, 2020. 11: p. 5790; Erişim adresi: https://www.nature.com/articles/s41467-020-19583-2
  • Rong,D., vd., Symbiotic degradation of polyvinyl alcohol by Novosphingobium sp. and Xanthobacter flavus. Journal of Environmental Biotechnology, 2009. 9 (2): p. 131-134; Erişim adresi: https://www.yumpu.com/en/document/view/40883301/symbiotic-degradation-of-polyvinyl-alcohol-by-novosphingobium-sp-
  • Seneviratne, G., vd., Polyethylene biodegradation by a developed Penicillium-Bacillus biofilm. Current Science, 2006. 90 (1): p. 20-21; Erişim adresi: https://www.researchgate.net/publication/ 283803718_Polyethylene_biodegradation_by_a_developed_Penicillium-Bacillus_biofilm
  • Çetin, D. ve S. Çıtak, Degradation of polyvinyl alcohol by a mixed microbial culture isolated from paper mill treatment. Gazi University Journal of Science, 2013. 27 (2): p. 839-845; Erişim adresi: https://www.semanticscholar.org/paper/Degradation-of-Polyvinyl-Alcohol-by-a-Mixed-Culture-%C3%87ET%C4%90N-Citak/9b775dee023397475bcdc18e9c2134e545b09160
  • Dwicania, E., A. Rinanti, ve M. F. Fachrul, Biodegradation of LLDPE plastic by mixed bacteria culture of Pseudomonas aeruginosa and Brevibacterium sp. Journal of Physics: Conferance Series, 4th Annual Applied Science and Engineering Conference, 2019. 1402; doi: 10.1088/1742-6596/1402/2/022105
  • Yin, C. F., Xu, Y. ve Zhou, N. Y. (2020). Biodegradation of polyethylene mulching films by a co-culture of Acinetobacter sp. strain NyZ450 and Bacillus sp. strain NyZ451 isolated from Tenebrio molitor larvae [Öz]. International Biodegradation & Biodegradation, 155; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/S0964830520310209
  • Aulwar, U. ve R.S. Awasthi, Production of biosurfactant and their role in bioremediation. Journal of Ecosystem & Ecography, 2016. 6 (3); doi: 10.4172/2157-7625.1000202
  • Pacwa- Plociniczak, M., vd., Environmental applications of biosurfactants: recent advances. International Journal of Molecular Sciences, 2011. 12 (1): p. 633-654; doi: 10.3390/ijms12010633
  • Mukherjee, S., U. R Chowdhuri,ve P.P. Kundu, Biodegradation of polyethylene waste by simultaneous use of two bacteria: Bacillus licheniformis for production of bio-surfactant and Lysinibacillus fusiformis for bio-degradation [Öz]. RSC Advances, 2016. 6: p. 2982-2992; Öze erişilen adres: https://pubs.rsc.org/en/content/articlelanding/2016/ra/c5ra25128a#!divAbstract
  • Vimala, P. P. ve L. Mathew, Biodegradation of polyethylene using Bacillus subtilis. Procedia Technology, 2016. 24: p. 232-239; Erişim adresi: https://www.sciencedirect.com/science/ article/pii/S2212017316301153
  • Furukawa, M., vd., Efficient degradation of poly(etylene terephthalate) with Thermobifida fusca cutinase exhibiting improved catalytic activity generated using mutagenesis and additive-based approaches. Scientific Reports, 2019. 9: p. 16038; Erişim adresi: https://www.nature.com/articles/ s41598-019-52379-z
  • Alkan, Z., vd., Production of biosurfactant by lactic acid bacteria using whey as growth medium. TÜBİTAK, Turk J Vet Anim Sci, 2019. 43: p.676-683; doi: 10.3906/vet-1903-48
  • Kaya, T., B. Aslım ve E. Kariptaş, Production of biosurfactant by Pseudomonas spp. İsolated from industrial waste in Turkey. TÜBİTAK, Turk J Biol, 2014. 38: p. 307-317; doi:10.3906/biy-1303-18
  • Keskin, N. O. S, vd., Production and structural characterization of biosurfactant produced by newly isolated staphylococcus xylosus STF1 from petroleum contaminated soil. Journal of Petroleum Science and Engineering, 2015. 133: p. 689-694; Erişim adresi: https://www.sciencedirect .com/science/article/abs/pii/S0920410515300565?via%3Dihub
  • Amobonye, A., vd., Plastic biodegradation: frontline microbes and their enzymes [Öz]. Science of The Total Environment, 2021. 759; Öze erişilen adres: https://www.sciencedirect.com/ science/article/abs/pii/S0048969720370674
  • Tachibana, Y., vd., Environmental biodegradability of recombinant structural protein. Scientific Reports, 2021. 11; Erişim adresi: https://www.nature.com/articles/s41598-020-80114-6?utm_source=other&utm_medium=other&utm_content=null&utm_campaign=JRCN_1_LW01_CN_SCIREP_article_paid_XMOL#citeas
  • Austin, H. P., M.D Allen ve B. S. Donohoe, Characterization and engineering of a plastic-degrading aromatic polyesterase. PNAS, 2017. 115 (19); Erişim adresi: https://www.pnas.org/ content/115/19/E4350
  • Cui, Y., vd., Computational redesign of PETase for plastic biodegradation by GRAPE strategy. Elektronik ön baskı, 2019; Erişim adresi: https://www.researchgate.net/publication /336157019_Computational_redesign_of_PETase_for_plastic_biodegradation_by_GRAPE_strategy
  • Gomes, D. S., vd., Production of heterologous cutinases by E. coli improved enzyme formulation for application on plastic degradation. Elektronik baskı, Electronic Journal of Biotechnology,2013. 16 (5); doi: 10.2225/vol16-issue5-fulltext-12
  • Yoon, M. G. ve H. J. Jeon, Biodegradation of polyethylene by a soil bacterium and AlkB cloned recombinant cell. Journal of Bioremediation & Biodegradation,2012. 3 (4); doi: 10.4172/2155-6199.1000145
  • Nakajima- Kambe, T., vd., Purification, cloning and expression of an Aspergillus niger lipase for degradation of poly(lactic acid) and poly(ε-caprolactone). Polymer Degradation and Stability, 2012. 97(2): p. 139-144; Öze erişilen adres: https://www.sciencedirect.com/science/ article/pii/S0141391011003855
  • Kim, J. W., S. B Park…, H. S. Kim, Functional expression of polyethylene terephthalate degrading enzyme (PETase) in green microalgae. Microbial Cell Factories, 2020. 19: p. 97; Erişim adresi: https://microbialcellfactories.biomedcentral.com/articles/ 10.1186/s12934-020-01355-8
  • Gamerith, C., vd., Enzymatic degradation of aromatic and aliphatic polyesters by P. pastoris expressed cutinase 1 from Thermobifida cellulosilytica. Frontiers in Microbiology,2017. 8: p. 938; doi: 10.3389/fmicb.2017.00938
  • Gambarini, V., vd., Phylogenetic distribution of plastic-degrading microorganisms. Applied and Environmental Science, 2021. 6 (1): p. e01112-20; doi: 10.1128/mSystems.01112-20
  • Palm, G. J., vd., Structure of plastic- degrading Ideonella sakaiensis MHETase bount to a substrate. Nature Communications, 2019. 10: p. 1717; Erişim adresi: https://www.nature.com/ articles/s41467-019-09326-3
  • Datta, S., vd., Metagenomic applications in microbial diversity, bioremediation, pollution monitoring, enzyme and drug discovery. A review [Öz]. Environmental Chemistry Letters,2020. 18: p. 1229-1241; Öze erişilen adres: https://link.springer.com/article/ 10.1007/s10311-020-01010-z
  • Dash, H. R ve S. Das, Chapter4- Molecular methods for studying microorganisms from atypical environments [Öz]. Methods in Microbiology,2018. 45: p. 89-122; Öze erişilen adres: https://www.sciencedirect.com/science/article/pii/S0580951718300114
  • Handelsman, J., Metagenomics: application of genomics to uncultured microorganisms. Microbial Molecular Biology Reviews, 2004. 68 (4): p. 669-685; doi: 10.1128/MMBR.68.4.669-685.2004
  • Pinnel, L. J. ve J. W. Turner, Shotgun metagenomics reveals the benthic microbial community response to plastic and bioplastic in coastal marine environment. Frontiers in Microbiology, 2019. 10: 1252; doi: 10.3389/fmicb.2019.01252
  • Lear, G., vd., Plastics and the microbiome: impacts and solutions. Environmental Microbiome, 2021. 16(2); Erişim adresi: https://environmentalmicrobiome.biomedcentral.com/articles/ 10.1186/s40793-020-00371-w
  • Oyewusi, H. A., vd., Functional profiling of bacterial communities in Lake Tuz using 16S rRNA gene sequences. Biotechnology & Biotechnological Equipment, 2020. 35(1): p. 1-10; Erişim adresi: https://www.tandfonline.com/doi/full/10.1080/13102818.2020.1840437
  • Arora, P. K. ve H. Bae, Integration of bioinformatics to biodegradation. Biological Procedures Online, 2014. 16: 8; Erişim adresi: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012781/
  • Oliveira, J. S., vd., BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. Database, 2015; Erişim adresi: https://academic.oup.com/database/ article/doi/10.1093/database/bav033/2433165

Plastic Biodegradation: General Problems and Biotechnological Solutions

Year 2021, , 324 - 339, 15.08.2021
https://doi.org/10.38001/ijlsb.851254

Abstract

Plastic pollution is a significant environmental problem. The damage caused by plastic pollution to the environment is increasing all over the world, as in Turkey. Plastic waste management methods are insufficient, and they cause different environmental pollution problems. Therefore, there is a need for an effective and environmentally friendly method. With the discovery of the microorganisms that can grow on plastics and degrading plastics enzymatically, plastic biodegradation became a potential solution for plastic pollution. Although there are lots of microorganisms and enzymes which are responsible for plastic biodegradation, the biodegradation process is not efficient to use against plastic pollution problem. Biotechnological approaches are used to improve efficiency of plastic biodegradation process and increase the usage. The general mechanism of plastic biodegradation, disadvantages and biotechnological approaches based on those problems were discussed in this review. Plastic biodegradation by microbial communities, effects of biosurfactants, genetic engineering approaches, metagenomics and bioinformatics approaches are emphasized. In addition, researches performed against plastic pollution in Turkey were evaluated.

References

  • Ritchie, H. ve M. Roser, Plastic pollution. Elektronik baskı: OurWorldInData.org, 2018; Erişim adresi: https://ourworldindata.org/plastic-pollution
  • Plastics Europe, Plastics- the facts 2019. Plastics Europe, 2019; Erişim adresi: https://www. plasticseurope.org/ en/resources/publications/1804-plastics-facts-2019
  • Plastics Europe, Plastics- the facts 2020. Plastics Europe, 2020; Erişim adresi: https://www. plasticseurope.org/en/resources/publications/4312-plastics-facts-2020
  • Dave, F., COVID-19 has worsened the ocean plastic pollution problem. Elektronik baskı: ScientificAmerican, 2020; Erişim adresi: https://www.scientificamerican.com/article/covid-19-has-worsened-the-ocean-plastic-pollution-problem/
  • Drzyzga, O. ve A, Prieto, Plastic waste management, a matter for the ‘community’. Microbial Biotechnology, 2018. 12: p. 1-3; doi: 10.1111/1751-7915.13328
  • Ilyas, M., vd., Plastic waste as a significant threat to environment – a systematic literature review. Reviews on Environmental Healthy, 2018. 33(4): p. 383-406; Erişim adresi: https://www.degruyter.com/view/journals/reveh/ 33/4/article-p383.xml
  • Lou, Y., vd., Biodegradation of polyethylene and polystyrene by greater wat moth larvae ( Galleria mellonella L.) and the effect of co-diet supplementation on the core gut microbiome. Environmental Science & Technology, 2020. 54 (5): p. 2821-2831; Erişim adresi: https://pubs.acs.org/ doi/10.1021/acs.est. 9b07044
  • Yang, J., vd., Evidence of polyethylene biodegradation by bacterial strains from the guts of plastic – eating waxworms. Environmental Science & Technology, 2014. 48 (23): p. 13776-13784; Erişim adresi: https://pubs.acs.org/doi/10.1021/ es504038a
  • Sharma. I., Bioremediation techniques for polluted environment: concept, advantages, limitations, and prospects. Trace Metals in the Environment, New Approaches and Recent Advances, 2019; doi: 10.5772/intechopen.90453
  • Heidarrezaei, M., vd., Isolation and characterization of a novel bacterium from the marine environment for trichloroacetic acid bioremediation. Applied Science, 2020. 10 (13): p. 4593; doi: 10.3390/app10134593
  • Oyewusi, H. A., vd., Alternative bioremediation agents against haloacids, haloacetates and chlorpyrifos using novel halogen-degrading bacterial isolates from the hypersaline lake Tuz. Catalysts, 2020. 10 (6): p. 651; doi: 10.3390/catal10060651
  • Sheth, M. U., vd., Bioengineering a future free of marine plastic waste. Frontiers in Marine Science, 2019. 6: p.624; doi: 10.3389/fmars.2019.00624
  • Meereboer, K. W., M. Misra, A. K. Mohanty, Review of recent advances in the biodegradability of polyhydroxyalkanoate (PHA) bioplastics and their composites. Green Chemistry, 2020. 22: p.5519-5558; doi: 10.1039/d0gc01647k
  • Danso, D., J. Chow, W. Streit, Plastics: environmental and biotechnological perspectives on microbial degradation. Applied and Environmental Microbiology, 2019. 85 (19): p. e01095-19; doi: 10.1128/AEM.01095-19.
  • Fesseha H ve F. Abebe, Degradation of plastic materials using microorganisms: A review. Public Health Open Journal, 2019. 4(2): p. 57-63; doi: 10.17140/PHOJ-4-136.
  • Plastics Microbial Biodegradation Database.; Erişim Adresi: http://pmbd.genomemining.cn/home/ [Erişim tarihi: 2020]
  • Ibiene, A.A., H. O. Stanley, O. M. Immanuel, Biodegradation of polyethylene by Bacillus sp. indigenous to niger delta mangrove swamp.Nigerian Journal of Biotechnology, 2013. 26:p. 68-79; Erişim adresi: https://www.researchgate.net/publication/325451710_Biodegradation_of_polyethylene _by_Bacillus_sp_indigenous_to_the_Niger_Delta_mangrove_swamp
  • Usha, R., T. Sangeetha, M. Palaniswamy, Screening of polyethylene degrading microorganisms from garbage soil. Libyan Agriculture Research Center Journal International, 2011. 2 (4): p. 200-204; Erişim adresi: https://www.researchgate.net/publication/265408136_Screening_of_Polyethylene_ Degrading_Microorganisms_from_Garbage_Soil
  • Giacomucci, L., vd. , Polyvinyl chloride biodegradation by Pseudomonas citronellolis and Bacillus flexus [Öz]. New Biotechnology, 2019. 52: p. 35-41; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/ S1871678418301560
  • Helen, A. S., E.C. Uche ve F. S. Hamid, Screening for polypropylene degradation potential of bacteria isolated from mangrove ecosystems in peninsular malaysia. International Journal of Bioscience, Biochemistry and Bioinformatics, 2017. 7(4); doi: 10.17706/ijbbb.2017. 7.4.245-251
  • Maroof, L., vd., Identification and characterization of low density polyethylene- degrading bacteria isolated from soils of waste disposal sites. Environmental Engineering Research, 2020. 26 (3); Erişim adresi: http://eeer.org/ journal/view.php?doi=10.4491/eer.2020.167
  • Taghavi, N., N. Singhal, W. Zhuang, S. Baroutian, Degradation of plastic waste using stimulated and naturally occuring microbial strains [Öz]. Chemosphere, 2020. 263; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/S0045653520321706
  • Arıkan, E. B. ve H. D Bilgen, Investigation of fungal biodegradation of starch based bioplastic spoon wastes. Mühendislik Bilimleri ve Tasarım Dergisi, 2019. 7(2): p. 294-300; doi: 10.21923/jesd.456400
  • Ibrahim, I. N., vd., Assessment of potential plastic-degrading fungi in Jordanian habitats. TÜBİTAK, Turkish Journal of Biology,2011. 35: p. 551- 557; doi: 10.3906/biy-0901-9
  • Chaudhary, A. K. C. ve R. P Vijayakumar, Studies on biological degradation of polystyrene by pure fungal cultures [Öz]. Environment, Development and Sustainability,2020. 22: p. 4495 -4508; Öze erişilen adres: https://link.springer.com/article/10.1007/s10668-019-00394-5
  • Min, K., J. D. Cuiffi ve R. T. Mathers, Ranking environmental degradation trends of plastic marine debris based on physical properties and molecular structure. Nature Communications, 2020. 11: p.727; Erişim adresi: https://www.nature.com/articles/s41467-020-14538-z
  • Purohit, J., A. Chattopadhyay ve B. Teli, Metagenomic exploration of plastic degrading microbes for biotechnological application. Current Genomics, 2020. 21(4): p.253-270; doi: 10.2174/1389202921999200525155711
  • Esan, E. O., L. Abbey ve S. Yurgel, Exploring the long-term effect of plastic on compost microbiome. PLoS ONE, 2019. 14(3): p.e0214376; Erişim adresi: https://journals.plos. org/plosone/article?id=10.1371/journal.pone.0214376
  • Meyer-Cifuentes, I. E.,…, B. Öztürk, Synergistic biodegradation of aromatic- aliphatic copolyester plastic by marine microbial consortium. Nature Communications, 2020. 11: p. 5790; Erişim adresi: https://www.nature.com/articles/s41467-020-19583-2
  • Rong,D., vd., Symbiotic degradation of polyvinyl alcohol by Novosphingobium sp. and Xanthobacter flavus. Journal of Environmental Biotechnology, 2009. 9 (2): p. 131-134; Erişim adresi: https://www.yumpu.com/en/document/view/40883301/symbiotic-degradation-of-polyvinyl-alcohol-by-novosphingobium-sp-
  • Seneviratne, G., vd., Polyethylene biodegradation by a developed Penicillium-Bacillus biofilm. Current Science, 2006. 90 (1): p. 20-21; Erişim adresi: https://www.researchgate.net/publication/ 283803718_Polyethylene_biodegradation_by_a_developed_Penicillium-Bacillus_biofilm
  • Çetin, D. ve S. Çıtak, Degradation of polyvinyl alcohol by a mixed microbial culture isolated from paper mill treatment. Gazi University Journal of Science, 2013. 27 (2): p. 839-845; Erişim adresi: https://www.semanticscholar.org/paper/Degradation-of-Polyvinyl-Alcohol-by-a-Mixed-Culture-%C3%87ET%C4%90N-Citak/9b775dee023397475bcdc18e9c2134e545b09160
  • Dwicania, E., A. Rinanti, ve M. F. Fachrul, Biodegradation of LLDPE plastic by mixed bacteria culture of Pseudomonas aeruginosa and Brevibacterium sp. Journal of Physics: Conferance Series, 4th Annual Applied Science and Engineering Conference, 2019. 1402; doi: 10.1088/1742-6596/1402/2/022105
  • Yin, C. F., Xu, Y. ve Zhou, N. Y. (2020). Biodegradation of polyethylene mulching films by a co-culture of Acinetobacter sp. strain NyZ450 and Bacillus sp. strain NyZ451 isolated from Tenebrio molitor larvae [Öz]. International Biodegradation & Biodegradation, 155; Öze erişilen adres: https://www.sciencedirect.com/science/article/abs/pii/S0964830520310209
  • Aulwar, U. ve R.S. Awasthi, Production of biosurfactant and their role in bioremediation. Journal of Ecosystem & Ecography, 2016. 6 (3); doi: 10.4172/2157-7625.1000202
  • Pacwa- Plociniczak, M., vd., Environmental applications of biosurfactants: recent advances. International Journal of Molecular Sciences, 2011. 12 (1): p. 633-654; doi: 10.3390/ijms12010633
  • Mukherjee, S., U. R Chowdhuri,ve P.P. Kundu, Biodegradation of polyethylene waste by simultaneous use of two bacteria: Bacillus licheniformis for production of bio-surfactant and Lysinibacillus fusiformis for bio-degradation [Öz]. RSC Advances, 2016. 6: p. 2982-2992; Öze erişilen adres: https://pubs.rsc.org/en/content/articlelanding/2016/ra/c5ra25128a#!divAbstract
  • Vimala, P. P. ve L. Mathew, Biodegradation of polyethylene using Bacillus subtilis. Procedia Technology, 2016. 24: p. 232-239; Erişim adresi: https://www.sciencedirect.com/science/ article/pii/S2212017316301153
  • Furukawa, M., vd., Efficient degradation of poly(etylene terephthalate) with Thermobifida fusca cutinase exhibiting improved catalytic activity generated using mutagenesis and additive-based approaches. Scientific Reports, 2019. 9: p. 16038; Erişim adresi: https://www.nature.com/articles/ s41598-019-52379-z
  • Alkan, Z., vd., Production of biosurfactant by lactic acid bacteria using whey as growth medium. TÜBİTAK, Turk J Vet Anim Sci, 2019. 43: p.676-683; doi: 10.3906/vet-1903-48
  • Kaya, T., B. Aslım ve E. Kariptaş, Production of biosurfactant by Pseudomonas spp. İsolated from industrial waste in Turkey. TÜBİTAK, Turk J Biol, 2014. 38: p. 307-317; doi:10.3906/biy-1303-18
  • Keskin, N. O. S, vd., Production and structural characterization of biosurfactant produced by newly isolated staphylococcus xylosus STF1 from petroleum contaminated soil. Journal of Petroleum Science and Engineering, 2015. 133: p. 689-694; Erişim adresi: https://www.sciencedirect .com/science/article/abs/pii/S0920410515300565?via%3Dihub
  • Amobonye, A., vd., Plastic biodegradation: frontline microbes and their enzymes [Öz]. Science of The Total Environment, 2021. 759; Öze erişilen adres: https://www.sciencedirect.com/ science/article/abs/pii/S0048969720370674
  • Tachibana, Y., vd., Environmental biodegradability of recombinant structural protein. Scientific Reports, 2021. 11; Erişim adresi: https://www.nature.com/articles/s41598-020-80114-6?utm_source=other&utm_medium=other&utm_content=null&utm_campaign=JRCN_1_LW01_CN_SCIREP_article_paid_XMOL#citeas
  • Austin, H. P., M.D Allen ve B. S. Donohoe, Characterization and engineering of a plastic-degrading aromatic polyesterase. PNAS, 2017. 115 (19); Erişim adresi: https://www.pnas.org/ content/115/19/E4350
  • Cui, Y., vd., Computational redesign of PETase for plastic biodegradation by GRAPE strategy. Elektronik ön baskı, 2019; Erişim adresi: https://www.researchgate.net/publication /336157019_Computational_redesign_of_PETase_for_plastic_biodegradation_by_GRAPE_strategy
  • Gomes, D. S., vd., Production of heterologous cutinases by E. coli improved enzyme formulation for application on plastic degradation. Elektronik baskı, Electronic Journal of Biotechnology,2013. 16 (5); doi: 10.2225/vol16-issue5-fulltext-12
  • Yoon, M. G. ve H. J. Jeon, Biodegradation of polyethylene by a soil bacterium and AlkB cloned recombinant cell. Journal of Bioremediation & Biodegradation,2012. 3 (4); doi: 10.4172/2155-6199.1000145
  • Nakajima- Kambe, T., vd., Purification, cloning and expression of an Aspergillus niger lipase for degradation of poly(lactic acid) and poly(ε-caprolactone). Polymer Degradation and Stability, 2012. 97(2): p. 139-144; Öze erişilen adres: https://www.sciencedirect.com/science/ article/pii/S0141391011003855
  • Kim, J. W., S. B Park…, H. S. Kim, Functional expression of polyethylene terephthalate degrading enzyme (PETase) in green microalgae. Microbial Cell Factories, 2020. 19: p. 97; Erişim adresi: https://microbialcellfactories.biomedcentral.com/articles/ 10.1186/s12934-020-01355-8
  • Gamerith, C., vd., Enzymatic degradation of aromatic and aliphatic polyesters by P. pastoris expressed cutinase 1 from Thermobifida cellulosilytica. Frontiers in Microbiology,2017. 8: p. 938; doi: 10.3389/fmicb.2017.00938
  • Gambarini, V., vd., Phylogenetic distribution of plastic-degrading microorganisms. Applied and Environmental Science, 2021. 6 (1): p. e01112-20; doi: 10.1128/mSystems.01112-20
  • Palm, G. J., vd., Structure of plastic- degrading Ideonella sakaiensis MHETase bount to a substrate. Nature Communications, 2019. 10: p. 1717; Erişim adresi: https://www.nature.com/ articles/s41467-019-09326-3
  • Datta, S., vd., Metagenomic applications in microbial diversity, bioremediation, pollution monitoring, enzyme and drug discovery. A review [Öz]. Environmental Chemistry Letters,2020. 18: p. 1229-1241; Öze erişilen adres: https://link.springer.com/article/ 10.1007/s10311-020-01010-z
  • Dash, H. R ve S. Das, Chapter4- Molecular methods for studying microorganisms from atypical environments [Öz]. Methods in Microbiology,2018. 45: p. 89-122; Öze erişilen adres: https://www.sciencedirect.com/science/article/pii/S0580951718300114
  • Handelsman, J., Metagenomics: application of genomics to uncultured microorganisms. Microbial Molecular Biology Reviews, 2004. 68 (4): p. 669-685; doi: 10.1128/MMBR.68.4.669-685.2004
  • Pinnel, L. J. ve J. W. Turner, Shotgun metagenomics reveals the benthic microbial community response to plastic and bioplastic in coastal marine environment. Frontiers in Microbiology, 2019. 10: 1252; doi: 10.3389/fmicb.2019.01252
  • Lear, G., vd., Plastics and the microbiome: impacts and solutions. Environmental Microbiome, 2021. 16(2); Erişim adresi: https://environmentalmicrobiome.biomedcentral.com/articles/ 10.1186/s40793-020-00371-w
  • Oyewusi, H. A., vd., Functional profiling of bacterial communities in Lake Tuz using 16S rRNA gene sequences. Biotechnology & Biotechnological Equipment, 2020. 35(1): p. 1-10; Erişim adresi: https://www.tandfonline.com/doi/full/10.1080/13102818.2020.1840437
  • Arora, P. K. ve H. Bae, Integration of bioinformatics to biodegradation. Biological Procedures Online, 2014. 16: 8; Erişim adresi: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4012781/
  • Oliveira, J. S., vd., BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies. Database, 2015; Erişim adresi: https://academic.oup.com/database/ article/doi/10.1093/database/bav033/2433165
There are 61 citations in total.

Details

Primary Language Turkish
Subjects Industrial Biotechnology
Journal Section Review Articles
Authors

Dilara Özden 0000-0001-8762-3582

Publication Date August 15, 2021
Published in Issue Year 2021

Cite

EndNote Özden D (August 1, 2021) Plastik Biyodegradasyonu: Genel Sorunlar ve Biyoteknolojik Çözümler. International Journal of Life Sciences and Biotechnology 4 2 324–339.


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