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Yirgacheffe Coffee Germplasm Collection, Characterization and Conservation

Year 2025, Volume: 8 Issue: 2, 106 - 116, 15.08.2025
https://doi.org/10.38001/ijlsb.1683411

Abstract

This study was aimed to find out genetic diversity of Twenty six Coffea Arabica landrace germplasms collected from Yirgacheffe district of Gedeo zone depending on morphological characteristics at seedling stage. Collected Coffea Arabica landrace germplasms seeds and 2 standard checks were planted and raised at Wanago Tumata Chiracha nursery site in plastic bags arranged with randomized complete design in the years 2022 to 2023. Seedling characteristics variables such as seedling height, number of paired leaf, leaf length, leaf width, leaf area, petiole length, node number, inter-node length and stem diameter were collected from one year old randomly selected three seedlings from each accession and each plot. The results revealed that there were significant variations (p<0.05) between and within collected Coffea Arabica landrace gemplasms and standard checks for the above quantitative parameters. Data of five qualitative traits (young leaf color, leaf shape, leaf apex shape, leaf petiole color and young shoot color) were recorded from three representative seedlings for each Coffea Arabica landrace germplasm accession. Frequency distribution estimation using Shannon and Weaver diversity index results of qualitative parameters disclosed the presence of genetic variability between collected coffee geremplasm accessions and standard checks. Additionally cluster analysis of qualitative parameters grouped 26 coffee landrace germplasm accessions and 2 standard checks in to three clusters. Consequently, Coffea arabica landraces germplasm having high seedling height, leaf length, number of paired leaves and leaf area should get emphasis during selection for plantation. Moreover, every concerned body, such as breeders, farmers, and genetic conservationists should take action to conserve and keep the gene pool of these coffees since it paved the way for biotechnologists to characterize coffee at molecular level and breeder consider it to release superior new coffee varieties.

References

  • 1. Tewolde, B., The importance of Ethiopian forests in the conservation of Arabica coffee gene-pools, (1990): 65-72. https://www.cabidigitallibrary.org/doi/full/10.5555/19931640244
  • 2. Labouisse, J.-P., and S. Kotecha, Preserving diversity for specialty coffees. A focus on production systems and genetic resources of Arabica coffee in Ethiopia, 2008. https://doi.org/10.1007/s10722-008-9361-7
  • 3. Bellachew, B., and J. P. Labouisse, Arabica coffee (Coffea arabica L.) local landrace development strategy in its center of origin and diversity, 2007. https://agritrop.cirad.fr/540084/7/ASIC2006-Communication-Bayetta-Labouisse.pdf
  • 4. Taye, K.., Status of Arabica Coffee Germplasm in Ethiopia, In the 3rd African Coffee Sustainability Forum. AFCA Pre-Conference Event, Munyono, Uganda, 2013.
  • 5. Abdi, A., Agro-morphological characterization of coffee (Coffea arabica L.) landrace collected from Mesela, West Harerge, Ethiopia, PhD diss., M. Sc. Thesis Submitted to Graduate Studies of Hawassa University, Hawassa, Ethiopia, 2009.
  • 6. Kebede, M., and B. Bellachew, Phenotypic Diversity in the Hararge Coffee (Coffea arabica L) Germplasm for Quantitative Traits, East African Journal of Sciences 2, no. 1 (2008): 13-18. https://doi.org/10.4314/eajsci.v2i1.40358
  • 7. Ermias, H., Evaluation of Wellega coffee germplasm for yield, yield component and resistant to coffee berry disease at early bearing stage, An MSc thesis submitted to school of graduate studies of Alemaya University 69 (2005).
  • 8. Olika, K.., et al., Variability of quantitative traits in Limmu coffee (Coffea arabica L.) in Ethiopia, (2011): 482-493. https://doi.org/10.3923/ijar.2011.470.481
  • 9. Alemu, I., and D. Boke, Morphological Characterization of Coffee (Coffea Arabica L.) Landraces at Seedling Stage Collected from Guji Zones, Bangladesh Journal of Plant Breeding and Genetics 30, no. 2 (2017): 09-18. https://doi.org/10.3329/bjpbg.v30i2.34540
  • 10. Yirga, M., Phenotypic Characterization of Coffee (Coffea Arabica L.) Germplasm, in Ethiopia, American Journal of Bioscience 9, no. 2 (2021): 34-41. https://doi.org/10.11648/j.ajbio.20210902.11
  • 11. Abeyot, T., et al., Genetic diversity analysis for quality attributes of some promising Coffea arabica germplasm collections in southwestern Ethiopia, (2011): 236-244. https://doi.org/10.3923/jbs.2011.236.244
  • 12. Bekele, Y. D., Assessment of cup quality, morphological, biochemical, and molecular diversity of Coffea arabica L. genotypes of Ethiopia, PhD diss., University of the Free State, 2005. http://hdl.handle.net/11660/838
  • 13. Kathurima, C., et al., Evaluation of beverage quality and green bean physical characteristics of selected Arabica coffee genotypes in Kenya, (2009). https://agritrop.cirad.fr/552843
  • 14. Asner, G. P., et al., Environmental and biotic controls over aboveground biomass throughout a tropical rain forest, Ecosystems 12, no. 2 (2009): 261-278. https://doi.org/10.1007/s10021-008-9221-5
  • 15. Senbeta, F., et al., Wild Coffea arabica L. in Afro montane rainforests of Ethiopia: distribution, ecology and conservation, SINET: Ethiopian Journal of Science 30, no. 1 (2007): 13-24. https://doi.org/10.4314/sinet.v30i1.18278
  • 16. Ayalew N. B., The relationship between climate, disease and coffee yield: optimizing management for smallholder farmers, PhD diss., Department of Ecology, Environment and Plant Sciences, Stockholm University, 2023. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-216221
  • 17. Zerga K., and B. Tsegaye, Coffee Diversity and Conservation in Ethiopia, In Sustainable Agriculture Reviews 39, pp. 35-55. Cham: Springer International Publishing, 2020. https://doi.org/10.1007/978-3-030-38881-2_2
  • 18. Shanon, C. E., and W. Weaver, The mathematical theory of communication, University of Illinois., Urbana, USA (1963).
  • 19. Mason, C., Biology of Fresh Water Pollution, Pearson Education, 2002. https://doi.org/10.1201/9781482295368-7
  • 20. Peeters, J.P., and J.A. Martinelli, Hierarchical cluster analysis as a tool to manage variation in germplasm collections, Theoretical and applied genetics 78, no. 1 (1989): 42-48. https://doi.org/10.1007/bf00299751
  • 21. Chweya, J. A., and P. B. Eyzanguire, International Plant Genetic Resource Institute (IPGRI), Rome, Italy (1999).
  • 22. International Plant Genetic Resources Institute, Descriptors for Coffee (Coffea spp. and Psilanthus spp.), Bioversity International, 1996.
  • 23. Geletu, K. T., Genetic diversity of wild Coffea arabica populations in Ethiopia as a contribution to conservation and use planning, Vol. 44. Cuvillier Verlag, 2006. ISBN 978-3-86727-986-4
  • 24. WeldeMichael, G., et al., Genetic diversity analysis of some Ethiopian specialty coffee (Coffea arabica L.) accessions for cup quality attributing traits, J. of Biology, Agriculture and Healthcare 5, no. 5 (2015): 88-96. https://www.academia.edu/download/102675859/21565.pdf
  • 25. Senra J.F., et al., Initial performance and genetic diversity of coffee trees cultivated under contrasting altitude conditions, Scientia Agricola 80 (2023): e20220163. https://doi.org/10.1590/1678-992x-2022-0163
  • 26. Ayana, A., and E. Bekele, Multivariate analysis of morphological variation in sorghum (Sorghum bicolor (L.) Moench) germplasm from Ethiopia and Eritrea, Genetic Resources and Crop Evolution 46, no. 3 (1999): 273-284. https://link.springer.com/article/10.1023/A:1008657120946
  • 27. Belachew, B., Arabica coffee breeding for yield and resistance to coffee berry disease (Colletotrichum kahawae sp. Nov.) (2001).

Morphological Characterization and Diversity Analysis of Coffea Arabica Germplasm from Yirgacheffe, Ethiopia

Year 2025, Volume: 8 Issue: 2, 106 - 116, 15.08.2025
https://doi.org/10.38001/ijlsb.1683411

Abstract

This study aimed to assess the genetic diversity of twenty-six Coffea Arabica landrace germplasms collected from the Yirgacheffe district of the Gedeo zone depending on morphological characteristics at the seedling stage. Collected Coffea Arabica landrace germplasms seeds and 2 standard checks were planted and raised at Wanago Tumata Chiracha nursery site in plastic bags arranged with randomized complete design in the years 2022 to 2023. Seedling characteristics variables such as seedling height, number of paired leaves, leaf length, leaf width, leaf area, petiole length, node number, inter-node length, and stem diameter were collected from one year-old randomly selected three seedlings from each accession and each plot. The results revealed that there were significant variations (p<0.05) between and within collected Coffea Arabica landrace germplasms and standard checks for the above quantitative parameters. Data of five qualitative traits (young leaf color, leaf shape, leaf apex shape, leaf petiole color, and young shoot color) were recorded from three representative seedlings for each Coffea Arabica landrace germplasm accession. Frequency distribution estimation using Shannon and Weaver's diversity index results for qualitative parameters revealed the presence of genetic variability between the collected coffee germplasm accessions and standard checks. Accordingly, the highest diversity index (H) was recorded for young leaf color (1.414), followed by leaf shape (1.067) and leaf apex shape (0.908). This might be due to the oligogenic nature of gene action and slight environmental interaction. Relatively low diversity was observed in young shoot color (0.582) and leaf petiole color (0.429). Additionally, cluster analysis of qualitative parameters grouped 26 coffee landrace germplasm accessions and 2 standard checks into three clusters. Maximum numbers of coffee germplasm accessions were grouped in cluster-II (15) followed by cluster-I (9) and cluster-III (4). Consequently, Coffea Arabica landraces germplasm having high seedling height, leaf length, number of paired leaves and leaf area should get emphasis during selection for plantation. Moreover, every concerned body, such as breeders, farmers, and genetic conservationists should take action to conserve and keep the gene pool of these coffees since it paved the way for biotechnologists to characterize coffee at the molecular level and breeders consider it to release superior new coffee varieties.

Ethical Statement

No any ethical breach that happen during our research work

Supporting Institution

Dilla University

Thanks

We would like to acknowledge Dilla University Research Publication, Ethics and Dissemination Directorate office for availing the fund, resources and facilities with which this research was implemented. Special gratitude also goes to district level coffee experts for their cooperation in the field during entire coffee landrace germplasm collection from Yirgacheffe district Gedeo zone.

References

  • 1. Tewolde, B., The importance of Ethiopian forests in the conservation of Arabica coffee gene-pools, (1990): 65-72. https://www.cabidigitallibrary.org/doi/full/10.5555/19931640244
  • 2. Labouisse, J.-P., and S. Kotecha, Preserving diversity for specialty coffees. A focus on production systems and genetic resources of Arabica coffee in Ethiopia, 2008. https://doi.org/10.1007/s10722-008-9361-7
  • 3. Bellachew, B., and J. P. Labouisse, Arabica coffee (Coffea arabica L.) local landrace development strategy in its center of origin and diversity, 2007. https://agritrop.cirad.fr/540084/7/ASIC2006-Communication-Bayetta-Labouisse.pdf
  • 4. Taye, K.., Status of Arabica Coffee Germplasm in Ethiopia, In the 3rd African Coffee Sustainability Forum. AFCA Pre-Conference Event, Munyono, Uganda, 2013.
  • 5. Abdi, A., Agro-morphological characterization of coffee (Coffea arabica L.) landrace collected from Mesela, West Harerge, Ethiopia, PhD diss., M. Sc. Thesis Submitted to Graduate Studies of Hawassa University, Hawassa, Ethiopia, 2009.
  • 6. Kebede, M., and B. Bellachew, Phenotypic Diversity in the Hararge Coffee (Coffea arabica L) Germplasm for Quantitative Traits, East African Journal of Sciences 2, no. 1 (2008): 13-18. https://doi.org/10.4314/eajsci.v2i1.40358
  • 7. Ermias, H., Evaluation of Wellega coffee germplasm for yield, yield component and resistant to coffee berry disease at early bearing stage, An MSc thesis submitted to school of graduate studies of Alemaya University 69 (2005).
  • 8. Olika, K.., et al., Variability of quantitative traits in Limmu coffee (Coffea arabica L.) in Ethiopia, (2011): 482-493. https://doi.org/10.3923/ijar.2011.470.481
  • 9. Alemu, I., and D. Boke, Morphological Characterization of Coffee (Coffea Arabica L.) Landraces at Seedling Stage Collected from Guji Zones, Bangladesh Journal of Plant Breeding and Genetics 30, no. 2 (2017): 09-18. https://doi.org/10.3329/bjpbg.v30i2.34540
  • 10. Yirga, M., Phenotypic Characterization of Coffee (Coffea Arabica L.) Germplasm, in Ethiopia, American Journal of Bioscience 9, no. 2 (2021): 34-41. https://doi.org/10.11648/j.ajbio.20210902.11
  • 11. Abeyot, T., et al., Genetic diversity analysis for quality attributes of some promising Coffea arabica germplasm collections in southwestern Ethiopia, (2011): 236-244. https://doi.org/10.3923/jbs.2011.236.244
  • 12. Bekele, Y. D., Assessment of cup quality, morphological, biochemical, and molecular diversity of Coffea arabica L. genotypes of Ethiopia, PhD diss., University of the Free State, 2005. http://hdl.handle.net/11660/838
  • 13. Kathurima, C., et al., Evaluation of beverage quality and green bean physical characteristics of selected Arabica coffee genotypes in Kenya, (2009). https://agritrop.cirad.fr/552843
  • 14. Asner, G. P., et al., Environmental and biotic controls over aboveground biomass throughout a tropical rain forest, Ecosystems 12, no. 2 (2009): 261-278. https://doi.org/10.1007/s10021-008-9221-5
  • 15. Senbeta, F., et al., Wild Coffea arabica L. in Afro montane rainforests of Ethiopia: distribution, ecology and conservation, SINET: Ethiopian Journal of Science 30, no. 1 (2007): 13-24. https://doi.org/10.4314/sinet.v30i1.18278
  • 16. Ayalew N. B., The relationship between climate, disease and coffee yield: optimizing management for smallholder farmers, PhD diss., Department of Ecology, Environment and Plant Sciences, Stockholm University, 2023. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-216221
  • 17. Zerga K., and B. Tsegaye, Coffee Diversity and Conservation in Ethiopia, In Sustainable Agriculture Reviews 39, pp. 35-55. Cham: Springer International Publishing, 2020. https://doi.org/10.1007/978-3-030-38881-2_2
  • 18. Shanon, C. E., and W. Weaver, The mathematical theory of communication, University of Illinois., Urbana, USA (1963).
  • 19. Mason, C., Biology of Fresh Water Pollution, Pearson Education, 2002. https://doi.org/10.1201/9781482295368-7
  • 20. Peeters, J.P., and J.A. Martinelli, Hierarchical cluster analysis as a tool to manage variation in germplasm collections, Theoretical and applied genetics 78, no. 1 (1989): 42-48. https://doi.org/10.1007/bf00299751
  • 21. Chweya, J. A., and P. B. Eyzanguire, International Plant Genetic Resource Institute (IPGRI), Rome, Italy (1999).
  • 22. International Plant Genetic Resources Institute, Descriptors for Coffee (Coffea spp. and Psilanthus spp.), Bioversity International, 1996.
  • 23. Geletu, K. T., Genetic diversity of wild Coffea arabica populations in Ethiopia as a contribution to conservation and use planning, Vol. 44. Cuvillier Verlag, 2006. ISBN 978-3-86727-986-4
  • 24. WeldeMichael, G., et al., Genetic diversity analysis of some Ethiopian specialty coffee (Coffea arabica L.) accessions for cup quality attributing traits, J. of Biology, Agriculture and Healthcare 5, no. 5 (2015): 88-96. https://www.academia.edu/download/102675859/21565.pdf
  • 25. Senra J.F., et al., Initial performance and genetic diversity of coffee trees cultivated under contrasting altitude conditions, Scientia Agricola 80 (2023): e20220163. https://doi.org/10.1590/1678-992x-2022-0163
  • 26. Ayana, A., and E. Bekele, Multivariate analysis of morphological variation in sorghum (Sorghum bicolor (L.) Moench) germplasm from Ethiopia and Eritrea, Genetic Resources and Crop Evolution 46, no. 3 (1999): 273-284. https://link.springer.com/article/10.1023/A:1008657120946
  • 27. Belachew, B., Arabica coffee breeding for yield and resistance to coffee berry disease (Colletotrichum kahawae sp. Nov.) (2001).
There are 27 citations in total.

Details

Primary Language English
Subjects Soil Sciences and Plant Nutrition (Other)
Journal Section Research Articles
Authors

Esmael Kelil Hajı 0000-0003-1935-6173

Kumesa Weldegiyorgis Gebre 0009-0007-9039-8233

Nuredin Hassen Adem 0009-0002-0785-9937

Early Pub Date August 15, 2025
Publication Date August 15, 2025
Submission Date April 26, 2025
Acceptance Date July 2, 2025
Published in Issue Year 2025 Volume: 8 Issue: 2

Cite

EndNote Hajı EK, Gebre KW, Adem NH (August 1, 2025) Morphological Characterization and Diversity Analysis of Coffea Arabica Germplasm from Yirgacheffe, Ethiopia. International Journal of Life Sciences and Biotechnology 8 2 106–116.



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