Molecular Identification and Characterization of LEA Proteins in Jujube Genome
Abstract
LEA proteins, which are involved in the normal growth and development processes of plants, also play a protective role against abiotic stresses such as salt stress and drought. Although the LEA gene family has been identified in many plants to date, no comprehensive study of the characterization of LEA-encoding genes in the jujube (Ziziphus jujuba Mill.) genome have been performed. As being the best-known member of Rhamnaceae family, jujube (Ziziphus jujuba Mill.) is grown in Turkey as well as shows distribution especially in subtropical and tropical regions of the world. Jujube, containing high amounts of vitamin C and sugar; has economical and biological importance with anticancer and anti-inflammatory effects. In this study, it was aimed to define and characterize LEA genes in jujube genome in detail by using bioinformatics tools. The results of the study will provide comprehensive data about the LEA gene family and will present preliminary information for the functional research of jujube LEA proteins.
Keywords
References
- Büyük İ, Soydam-Aydın S, Aras S. Bitkilerin stres koşullarına verdiği moleküler cevaplar. Türk Hij ve Deney Biyol Derg 2012.
- Chinnusamy V, Schumaker K, Zhu JK. Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J. Exp. Bot., 2004. https://doi.org/10.1093/jxb/erh005.
- Galau GA, Wang HY, Hughes DW. Cotton Lea5 and Lea14 encode atypical late embryogenesis-abundant proteins. Plant Physiol 1993. https://doi.org/10.1104/pp.101.2.695.
- Dure L, Galau G. Developmental Biochemistry of Cottonseed Embryogenesis and Germination: XIII. Regulation of Biosynthesis of Principal Storage Proteins. Plant Physiol 1981. https://doi.org/10.1104/pp.68.1.187.
- Dure L, Crouch M, Harada J, Ho THD, Mundy J, Quatrano R, et al. Common amino acid sequence domains among the LEA proteins of higher plants. Plant Mol Biol 1989. https://doi.org/10.1007/BF00036962.
- Du D, Zhang Q, Cheng T, Pan H, Yang W, Sun L. Genome-wide identification and analysis of late embryogenesis abundant (LEA) genes in Prunus mume. Mol Biol Rep 2013. https://doi.org/10.1007/s11033-012-2250-3.
- Wu C, Hu W, Yan Y, Tie W, Ding Z, Guo J, et al. The late embryogenesis abundant protein family in cassava (manihot esculenta crantz): Genome-wide characterization and expression during abiotic stress. Molecules 2018;23:1–15. https://doi.org/10.3390/molecules23051196.
- Battaglia M, Olvera-Carrillo Y, Garciarrubio A, Campos F, Covarrubias AA. The enigmatic LEA proteins and other hydrophilins. Plant Physiol 2008. https://doi.org/10.1104/pp.108.120725.
Details
Primary Language
English
Subjects
Engineering
Journal Section
Research Article
Authors
Kevser Betül Ceylan
This is me
Türkiye
Yusuf Ceylan
This is me
Türkiye
Buket Ustaoğlu
This is me
Türkiye
Mehmet Cengiz Baloğlu
This is me
Türkiye
Publication Date
December 27, 2019
Submission Date
November 3, 2019
Acceptance Date
December 13, 2019
Published in Issue
Year 2019 Volume: 5 Number: 2