Research Article
BibTex RIS Cite

2-metil-1h-benzimidazol-5-karboksilik asit molekülünün yapısal ve titreşimsel spektrumlarının teorik ve deneysel olarak incelenmesi

Year 2017, , 545 - 563, 01.06.2017
https://doi.org/10.16984/saufenbilder.270275

Abstract

Bu çalışmada,
2-metil-1h-benzimidazol 5 karboksilik asit (2M1HB5C) molekülü deneysel
teknikler (FT-IR, Dispersive Raman, 1H ve 13C NMR
spektrumu) ve teorik (DFT metodu) hesaplamalar kullanılarak incelendi. Titreşimsel
spektrumlar (FT-IR ve dispersive-Raman) gibi deneysel sonuçlar, DFT (B3LYP)
metodu ve cc-pVDZ baz seti kullanılarak hesaplanmış teorik sonuçlar ile
desteklendi.
Uyarılma enerjileri, osilatör şiddeti, dalga boyları, HOMO ve LUMO
enerjileri gibi elektronik özellikler araştırıldı. Ayrıca moleküler
elektrostatik potansiyeli, termodinamik özellikleri hesaplandı ve natural bağ
orbital analizi yapıldı. Sonuç olarak 2M1HB5C molekülünün teorik sonuçları,
deneysel spektrumlar ile kıyaslandı ve aralarında iyi bir uyum olduğu görüldü.

References

  • [1] E. Palosi, K. Dezso, M. Erzsebet, I. Szvoboda, H. Laszlo, S. Gyorgy, V. Sandor, G. Vera, M. Katalin, European Patent Appl. EP. 324, 988, Chem. Abstr., vol. 112, pp 55864, 1990.
  • [2] S. Ram, D.S. Wise, L.L. Wotring, J.W, McCall, L.B. Townsend, ''Synthesis and biological activity of certain alkyl 5-(alkoxycarbonyl)-1H-benzimidazole-2-carbamates and related derivatives: a new class of potential antineoplastic and antifilarial agents'', J. Med. Chem., vol. 539, pp 539–547, 1992.
  • [3] K. Kubo, Y. lnada, Y. Kohara, Y. Sugiura, M. Ojima, K. ltoh, Y. Furukawa, N. Nishikawa, T. Naka, Nonpeptide angiotensin II receptor antagonists. Synthesis and biological activity of benzimidazoles, J. Med. Chem., vol. 36, pp 1772-1784, 1993.
  • [4] Kumar D.;Jacob M. R.; Reynolds M. B.; Kerwin S. M. Bioorg., ‘’Synthesis and evaluation of anticancer benzoxazoles and benzimidazoles related to UK-1’’, Med. Chem., vol. 10, 3997–4004, 2002.
  • [5] Boiani, M.;Gonzalez, M. ‘’Imidazole and Benzimidazole Derivatives as Chemotherapeutic Agents’’, Mini Rev. Med. Chem. vol.25, pp. 409-424, 2005.
  • [6]. Hori, A.;Imaeda, Y.; Kubo, K.; Kusaka, ‘’Novel benzimidazole derivatives selectively inhibit endothelial cell growth and suppress angiogenesis in vitro and in vivo’’ M. Cancer Lett. vol. 183, pp. 53-60, 2002.
  • [7]. Abdel‐Mohsen H. T.;Ragab F. A. F.; Ramla M. M.; Diwani H. I., ‘’Novel benzimidazole derivatives selectively inhibit endothelial cell growth and suppress angiogenesis in vitro and in vivo’’, Eur. J. Med. Chem, vol. 183, pp. 2336‐2344,2010.
  • [8]. Velaparthi U.;Liu P.; Balasubramanian B.; Carboni J.; Attar R.; Gottardis M.; Li A.; Greer A.; Zoeckler M.; Wittman M. D.; Vyas D., ‘’Imidazole moiety replacements in the 3-(1H-benzodimidazol-2-yl)pyridin-2(1H)-one inhibitors of insulin-like growth factor receptor-1 (IGF-1R) to improve cytochrome P450 profile’’, Bioorg. Med. Chem. Lett.,3072‐3076,2007.
  • [9]. Pagano M. A.;Andrzejewska M.; Ruzzene M.; Sarno S.; Cesaro L.; Bain J.; Elliott M.; Meggio F.; Kazimierczuk Z.; Pinna L.A., ‘’Optimization of Protein Kinase CK2 Inhibitors Derived from 4,5,6,7-Tetrabromobenzimidazole’’, J. Med. Chem., pp. 6239‐6247, 2004.
  • [10]. Pagano M. A.;Meggio F.; Ruzzene M.; Andrzejewska M.; Kazimierczuk Z.; Pinna L. A., ‘’2-Dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazole: a novel powerful and selective inhibitor of protein kinase CK2’’, Biochem. Biophys. Res. Commun., 1040‐1044. 2004.
  • [11]. Neff D. K.; Lee‐Dutra A.; Blevitt J. M.; Axe F. U.; Hack M. D.; Buma J. C.; Rynberg R; Brunmark A.; Karlsson L.; Breitenbucher G., 2-Aryl benzimidazoles featuring alkyl-linked pendant alcohols and amines as inhibitors of checkpoint kinase Chk2, Bioorg. Med.Chem. Lett. pp. 6467‐64712007.
  • [12]. Arienti K. L.;Brunmark A.; Axe F. U.; McClure K.; Lee A.; Blevitt J.; Neff D. K.; Huang L.; Crawford S.; Pandit C. R.; Karlsson L.; Breitenbucher J. G., ‘’Checkpoint Kinase Inhibitors:  SAR and Radio protective Properties of a Series of 2-Arylbenzimidazoles’’, pp. 1873‐1885, J. Med. Chem. 2005.
  • [13]. Hajduk J. P.;Boyd S.; Nettesheim D.; Nienaber V.; Severin J.; Smith R.; Davidson D.; Rockway T.; Fesik S. W., ‘’Privileged Molecules for Protein Binding Identified from NMR-Based Screening’’, pp. 3443-3447,J. Med. Chem.,2000.
  • [14]. Kumar D.;Jacob M. R.; Reynolds M. B.; Kerwin S. M. ‘’Synthesis and evaluation of anticancer benzoxazoles and benzimidazoles related to UK-1’’, Bioorg. Med. Chem., pp. 3997–4004, 2002.
  • [15]. Aboraia A. S.;Abdel‐Rahman H. M.; Mahfouz N. M.; EL‐Gendy M. A., ‘’Novel 5-(2-hydroxyphenyl)-3-substituted-2,3-dihydro-1,3,4-oxadiazole-2-thione derivatives: Promising anticancer agents’’ ,Bioorg. Med. Chem., pp. 1236‐1246, 2006.
  • [16] Ozbey S.,Ide S., Kendi E., ‘’The crystal and molecular structure of two benzimidazole derivatives: 1-(phenylmethyl)-2-(4-methoxyphenylmethyl)-1H-benzimidazole-5-carboxylic acid (I) and 1,2-di-(phenylmethyl)-1H-benzimidazole-5-carboxylic acid (II)’’, Journal of Molecular Structure, pp.23-30,1998.
  • [17] Göker H., Kus C., Boykin W. David., Yildiz S. And Altanlar N., ‘’Synthesis of bi functionalised flavins for incorporation into well defined redox systems’’, Bioorganic and Medicinal Chemistry, vol.10, pp. 2589-2596, 2002.
  • [18] Ozden S., Atabey D., Yildiz S. And Göker H., ‘’({4-[4-(1H-Benzimidazol-2-yl)phen¬yl]-1H-1,2,3-triazol-1-yl}meth¬oxy) ethanol’’ Bioorganic and Medicinal Chemistry, vol.13, pp. 1587-1597, 2005.
  • [19] Sahin E., İde S., Kurt M., Yurdakul S., ‘’Structural investigation of dibromobis (benzimidazole) Zn(II) complex’’, Journal of Mol. Structure, vol.616, pp. 259-264, 2002.
  • [20] Yurdakul S., Kurt M., ‘’Molecular structure and vibrational spectra of 1,2-bis(4-pyridyl) ethane by density functional theory and ab initio Hartree-Fock calculations’’ Journal of Mol. Structure, vol.650, pp. 181-190, 2003.
  • [21] S. Sudha, M. Karabacak, M. Kurt, M. Cinar, N. Sundaraganesan, ‘’FT-IR, FT-Raman, NMR and UV–vis spectra, vibrational assignments and DFT calculations of 4-butyl benzoic acid’’ Spectrochim Acta A,vol. 84,pp. 184-190, 2011.
  • [21] Güllüoglu M. Tahir.,Ozduran M., Kurt M., Kalaichelvan S., Sundaraganesan N., ‘’Molecular structure and vibrational spectra of 2- and 5-methyl benzimidazole molecules by density functional theory’’, Molecular and Biomolecular Spectroscopy, vol. 76, 107-114, 2010.
  • [22] N. Sundaraganesan, S. Ilakiamani, P. Subramani, B.D. Joshua, ‘’Molecular structure, vibrational, UV and NBO analysis of 4-chloro-7-nitrobenzofurazan by DFT calculations’’ Spectrochim. Acta A, vol. 67, pp.628, 2007.
  • [23] M.T. Gulluoglu, M. Ozduran, M. Kurt, S. Kalaichelvan, N. Sundaraganesan, ‘’Molecular structure, vibrational spectroscopic, first-order hyperpolarizability and HOMO, LUMO studies of 2-amino benzimidazole’’ Spectrochim. Acta A, vol. 107, 2010.
  • [24] M.T. Gulluoglu, Y. Erdogdu, J. Karpagam, N. Sundaraganesan, S¸ . Yurdakul, ‘’DFT, FT-Raman, FT-IR and FT-NMR studies of 4-phenylimidazole’’ J. Mol. Struct. Vol. 990, pp. 14-20, 2011.
  • [25] Sas Babur E., Kurt M., Karabacak M., Poiyamozhi A., Sundaraganesan N., ‘’Structural investigation of a self-assembled monolayer material 5-[(3-methylphenyl) (phenyl) amino] isophthalic acid for organic light-emitting devices’’ Journal of Molecular Structure, vol. 1081, pp. 506-518, 2015.
  • [26] Frisch, M. J., et al. Gaussian 09, Revision A. 02; Gaussian, Inc: Wallingford, CT, 2009. [27] P. Hohenberg, W. Kohn, ‘’Inhomogeneous Electron Gas’’, Phys. Rev. vol. 136, pp.B864, 1964.
  • [28] A.D. Becke, ‘’Density‐functional thermochemistry. III. The role of exact exchange’’, J. Chem. Phys. vol. 98, pp. 5648, 1993.
  • [29] M.H. Jamroz, ‘’Vibrational Energy Distribution Analysis (VEDA):Scopes and limitations’’, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy,vol. 114, pp. 220-230, 2013.
  • [30] G. Keresztury, S. Holly, J. Varga, G. Besenyei, A.Y. Wang, J.R. Durig, ‘’Vibrational spectra of monothiocarbamates-II. IR and Raman spectra, vibrational assignment, conformational analysis and ab initio calculations of S-methyl-N,N-dimethyl thiocarbamate’’ Spectrochim. Acta, vol. 49, pp. 1993, 2007.
  • [31] G. Keresztury, J.M. Chalmers, P.R. Griffith (Eds.), ‘’Raman Spectroscopy: Theory, Handbook of VibrationalSpectroscopy’’, vol. 1, John Wiley&Sons Ltd., New York, 2002.
  • [32] R. Ditchfield, ‘’Molecular Orbital Theory of Magnetic Shielding and Magnetic Susceptibility’’, J. Chem. Phys. vol.56, pp. 5688–5691, 1972.
  • [33] K. Wolinski, J.F. Hinton, P. Pulay, ‘’Efficient implementation of the gauge-independent atomic orbital method for NMR chemical shift calculations’’, J. Am. Chem. Soc., vol.112, pp. 8251–8260, 1990.
  • [34] N.M. O’Boyle, A.L. Tenderholt, K.M. Langner, ‘’A library for package-independent computational chemistry algorithms’’, J.Comp. Chem., vol. 29, pp. 839–845, 2008.
  • [35] Long-Huai Cheng, Zheng Zheng, Zhi-Li Han, Zhi-Chao Wu, Hong-Ping Zhou,
  • Acta Cryst., ‘’Rhombohedral boron subnitride, B~13~N~2~, by X-ray powder diffraction’’, 2012.
  • [36] P. Sinha, S. E. Boesch, C. Gu, R.A. Wheeler and A.K. Wilson, ‘’Harmonic Vibrational Frequencies: Scaling Factors for HF, B3LYP, and MP2 Methods in Combination with Correlation Consistent Basis Sets’’, The Journal of Phys. Chem., vol. 108, pp. 9213-9217, 2004.
  • [37] J. Coates, R.A. Meyers, ‘’Introduction to Infrared Spectrum, A Practical Approach’’,
  • John Wiley and Sons Ltd, Chichester, 2000.
  • [38] M. Karabacak, M. Kurt, A. Atac, ‘’Experimental and theoretical FT-IR and FT-Raman spectroscopic analysis of N1-methyl-2-chloroaniline’’ J. Phys. Org. Chem.vol. 22, pp. 321-330, 2009.
  • [39] G. Thilagavathi, M. Arivazhagan, ‘’Density functional theory calculation and vibrational spectroscopy study of 2-amino-4,6-dimethyl pyrimidine (ADMP)’’, Spectrochim. Acta,vol. 79A, pp. 389-395, 2010.
  • [40] M. Govindarajan, K. Ganasan, S. Periandy, M. Karabacak, ‘’Experimental (FT-IR and FT-Raman), electronic structure and DFT studies on 1-methoxynaphthalene’’ Spectrochim. Acta A, vol.79, pp. 646–653, 2011.
  • [41] R. Shanmugam, D. Sathyanarayana, ‘’Experimental (FT-IR and FT-Raman), electronic structure and DFT studies on 1-methoxynaphthalene’’, Spectrochim. Acta , vol.40A,pp. 757, 1984.
  • [42] M. Govindarajan, M. Karabacak, A. Suvitha, S. Periandy, ‘’FT-IR, FT-Raman, ab initio, HF and DFT studies, NBO, HOMO–LUMO and electronic structure calculations on 4-chloro-3-nitrotoluene’’, Spectrochim. Acta A, vol.89, pp. 137-148, 2012.
  • [43] G. Varsanyi, ‘’Assignments forVibrational Spectra of Seven Hundred Benzene
  • Derivatives’’, Halsted Press, 1974.
  • [44] A. Fu, D. Du, Z. Zhou, ‘’Density functional theory study of vibrational spectra of acridine and phenazine’’, Spectrochim. Acta, vol. 59, pp. 245, 2003.
  • [45] M. Karabacak, E. Sahin, M. Cinar, I. Erol, M. Kurt, ‘’X-ray, FT-Raman, FT-IR spectra and ab initio HF, DFT calculations of 2-[(5-methylisoxazol-3-yl)amino]-2-oxo-ethyl methacrylate’’, J. Mol. Struct., vol. 886, pp. 148-157, 2008.
  • [46] N. Sundaraganesan, S. Ilakiamani, P. Subramani, B.D. Joshua, ‘’Comparison of experimental and ab initio HF and DFT vibrational spectra of benzimidazole’’, Spectrochim. Acta, vol. 67A, pp. 628-635, 2007.
  • [47] Y. Wang, S. Saebo, C.U. Pittman, ‘’The structure of aniline by ab initio studies’’, J. Mol. Struct. Theochem, vol. 281, pp. 91-98, 1993.
  • [48] A. Altun, K. Golcuk, M. Kumru, ‘’Structure and vibrational spectra of p-methylaniline: Hartree-Fock, MP2 and density functional theory studies’’, J. Mol. Struct. Theochem, vol. 637 pp.155–169, 2003.
  • [49] T. Sivaranjini, S. Periandy, M. Govindarajan, M. Karabacak, A.M. Asiri, ‘’Spectroscopic (FT-IR, FT-Raman and NMR) and computational studies on 3-methoxyaniline’’, J. Mol.
  • Struct.,vol. 1056, pp. 176–188, 2014.
  • [50] G. Socrates, Infrared Characteristic Group Frequencies Tables and Charts, 3rd Edition, John Wiley and Sons, New York, 1980.
  • [51] D.A. Kleinman, ‘’Nonlinear Dielectric Polarization in Optical Media’’, Phys. Rev.,vol. 126, pp. 1962, 1977.
  • [52] N.B. Colthup, L.H. Daly, S.E. Wiberly, ‘’Introduction to Infrared and Raman
  • Spectroscopy’’, Academic Press, Third Edition New York, 1990.
  • [53] B. Venkataram Reddy, G. Ramana Rao, ‘’Transferable valence force fields for substituted benzenes: Part I. Monohalogenated anisoles’’, Vib. Spectrosc., vol.6, pp.231-250, 1994.
  • [54] P.B. Nagabalasubramanian, M. Karabacak, S. Periandy, ‘’Vibrational frequencies, structural confirmation stability and HOMO–LUMO analysis of nicotinic acid ethyl ester with experimental (FT-IR and FT-Raman) techniques and quantum mechanical calculations’’ ,J. Mol. Struct., vol. 1017, pp. 1-13, 2012.
  • [55] D.L. Vein, N.B. Colthup, W.G. Fateley, J.G. Grasselli, ‘’The Handbook of Infrared
  • and Raman Characteristic Frequencies of Organic Molecules’’, AcademicPress,
  • San Diego, 1991.
  • [56] R.M. Silverstein, F.X. Webster, ‘’Spectroscopic Identification of Organic Compound’’, sixth ed., John Willey&Sons, New York, 1998.
  • [57] B. Smith, ‘’Infrared Spectral Interpretation. A Systematic Approach’’, CRC Press,Washington, DC, 1999.
  • [58] C. Ravi kumar, I. Hubert Joe, V.S. Jayakumar, ‘’Charge transfer interactions and nonlinear optical properties of push–pull chromophore benzaldehyde phenylhydrazone: A vibrational approach’’, Chem. Phys. Lett., vol. 460, pp.552-558, 2008.
  • [59] E.D. Glendening, C.R. Landis, F. Weinhold, ‘’Natural bond orbital methods’’, Comput. Mol. Sci., vol. 2, pp. 1–42, 2011.
  • [60] A.E. Reed, L.A. Curtiss, F. ‘’Weinhold, Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint’’, Chem. Rev., vol. 88, pp.899, 1988.
  • [61] T. Schlick, ‘’Molecular Modeling and Simulation: An Inter disciplinary Guide’’,
  • second ed.,Springer, New York, 2010.
  • [62] K. Fukui, ‘’The Role of Frontier Orbitals in chemical reactions’’, Science, vol. 218, pp. 747–754, 1982.
  • [63] M. Arivazhagan, D. Anitha Rexalin, ‘’FT-IR, FT-Raman, NMR studies and ab initio-HF, DFT-B3LYP vibrational analysis of 4-chloro-2-fluoroaniline’’, Spectrochim. Acta A, vol.96, pp. 668–676, 2012.
  • [64] R. Hoffman, ‘’Solids and Surfaces: A Chemist’s View of Bonding in Extended
  • Structures’’, WILEY-VCH, 1988.
  • [65] T. Hughbanks, R. Hoffmann, ‘’Chains of trans-edge-sharing molybdenum octahedra: metal-metal bonding in extended systems’’, J. Am. Chem. Soc. vol.105, pp. 3528–3537, 1983.
  • [66] J.G. Małecki, ‘’Synthesis, crystal, molecular and electronic structures of thiocyanate ruthenium complexes with pyridine and its derivatives as ligands’’, Polyhedron vol. 29 pp. 1973–1979, 2010.
  • [67] M. Chen, U.V. Waghmare, C.M. Friend, E. Kaxiras, ‘’A density functional study of clean and hydrogen-covered α-MoO3(010):α-MoO3(010):Electronic structure and surface relaxation’’, J. Chem. Phys. vol. 109, pp. 6854–6860, 1998.
  • [68] J. Murray, K. Sen, ‘’Molecular Electrostatic Potentials: Concepts and Applications’’, 1 st edition, Elsevier, Amsterdam, 1996.
  • [69] E. Scrocco, J. Tomasi, ‘’Electronic Molecular Structure, Reactivity and Intermolecular Forces: An Euristic Interpretation by Means of Electrostatic Molecular Potentials’’, Advances in Quantum Chemistry, vol. 11, pp. 115-193, 1978.
  • [70] J.B. Ott, J. Boerio-Goates, ‘’Chemical Thermodynamics: Advanced Applications,
  • Calculations from Statistical Thermodynamics’’, Academic Press, 2000.

Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule

Year 2017, , 545 - 563, 01.06.2017
https://doi.org/10.16984/saufenbilder.270275

Abstract

In this study, 2-methyl
-1h-benzimidazole 5 carboxylic acid (2M1HB5C) molecule was investigated by
using experimental (FT-IR, Dispersive Raman, 1H and 13C
NMR spectra ) techniques and theoretical (DFT approach ) calculations. Experimental
results such as vibrational (FT-IR and Dispersive-Raman) spectra were supported
by the theoritical results obtained from DFT (B3LYP) method and cc-pVDZ basis
set calculations.
Electronic characteristics, such as excitation energies, oscillator strengths,
wavelengths, HOMO and LUMO energies were investigated for 2M1HB5C molecule.
Furthermore, molecular electrostatic potential, natural
bond orbital analysis and thermodynamic features were calculated. As a
conclusion, the calculated results were compared with the experimental spectra
of the
2M1HB5C molecule, which were in a
good agreement with observed ones.  

References

  • [1] E. Palosi, K. Dezso, M. Erzsebet, I. Szvoboda, H. Laszlo, S. Gyorgy, V. Sandor, G. Vera, M. Katalin, European Patent Appl. EP. 324, 988, Chem. Abstr., vol. 112, pp 55864, 1990.
  • [2] S. Ram, D.S. Wise, L.L. Wotring, J.W, McCall, L.B. Townsend, ''Synthesis and biological activity of certain alkyl 5-(alkoxycarbonyl)-1H-benzimidazole-2-carbamates and related derivatives: a new class of potential antineoplastic and antifilarial agents'', J. Med. Chem., vol. 539, pp 539–547, 1992.
  • [3] K. Kubo, Y. lnada, Y. Kohara, Y. Sugiura, M. Ojima, K. ltoh, Y. Furukawa, N. Nishikawa, T. Naka, Nonpeptide angiotensin II receptor antagonists. Synthesis and biological activity of benzimidazoles, J. Med. Chem., vol. 36, pp 1772-1784, 1993.
  • [4] Kumar D.;Jacob M. R.; Reynolds M. B.; Kerwin S. M. Bioorg., ‘’Synthesis and evaluation of anticancer benzoxazoles and benzimidazoles related to UK-1’’, Med. Chem., vol. 10, 3997–4004, 2002.
  • [5] Boiani, M.;Gonzalez, M. ‘’Imidazole and Benzimidazole Derivatives as Chemotherapeutic Agents’’, Mini Rev. Med. Chem. vol.25, pp. 409-424, 2005.
  • [6]. Hori, A.;Imaeda, Y.; Kubo, K.; Kusaka, ‘’Novel benzimidazole derivatives selectively inhibit endothelial cell growth and suppress angiogenesis in vitro and in vivo’’ M. Cancer Lett. vol. 183, pp. 53-60, 2002.
  • [7]. Abdel‐Mohsen H. T.;Ragab F. A. F.; Ramla M. M.; Diwani H. I., ‘’Novel benzimidazole derivatives selectively inhibit endothelial cell growth and suppress angiogenesis in vitro and in vivo’’, Eur. J. Med. Chem, vol. 183, pp. 2336‐2344,2010.
  • [8]. Velaparthi U.;Liu P.; Balasubramanian B.; Carboni J.; Attar R.; Gottardis M.; Li A.; Greer A.; Zoeckler M.; Wittman M. D.; Vyas D., ‘’Imidazole moiety replacements in the 3-(1H-benzodimidazol-2-yl)pyridin-2(1H)-one inhibitors of insulin-like growth factor receptor-1 (IGF-1R) to improve cytochrome P450 profile’’, Bioorg. Med. Chem. Lett.,3072‐3076,2007.
  • [9]. Pagano M. A.;Andrzejewska M.; Ruzzene M.; Sarno S.; Cesaro L.; Bain J.; Elliott M.; Meggio F.; Kazimierczuk Z.; Pinna L.A., ‘’Optimization of Protein Kinase CK2 Inhibitors Derived from 4,5,6,7-Tetrabromobenzimidazole’’, J. Med. Chem., pp. 6239‐6247, 2004.
  • [10]. Pagano M. A.;Meggio F.; Ruzzene M.; Andrzejewska M.; Kazimierczuk Z.; Pinna L. A., ‘’2-Dimethylamino-4,5,6,7-tetrabromo-1H-benzimidazole: a novel powerful and selective inhibitor of protein kinase CK2’’, Biochem. Biophys. Res. Commun., 1040‐1044. 2004.
  • [11]. Neff D. K.; Lee‐Dutra A.; Blevitt J. M.; Axe F. U.; Hack M. D.; Buma J. C.; Rynberg R; Brunmark A.; Karlsson L.; Breitenbucher G., 2-Aryl benzimidazoles featuring alkyl-linked pendant alcohols and amines as inhibitors of checkpoint kinase Chk2, Bioorg. Med.Chem. Lett. pp. 6467‐64712007.
  • [12]. Arienti K. L.;Brunmark A.; Axe F. U.; McClure K.; Lee A.; Blevitt J.; Neff D. K.; Huang L.; Crawford S.; Pandit C. R.; Karlsson L.; Breitenbucher J. G., ‘’Checkpoint Kinase Inhibitors:  SAR and Radio protective Properties of a Series of 2-Arylbenzimidazoles’’, pp. 1873‐1885, J. Med. Chem. 2005.
  • [13]. Hajduk J. P.;Boyd S.; Nettesheim D.; Nienaber V.; Severin J.; Smith R.; Davidson D.; Rockway T.; Fesik S. W., ‘’Privileged Molecules for Protein Binding Identified from NMR-Based Screening’’, pp. 3443-3447,J. Med. Chem.,2000.
  • [14]. Kumar D.;Jacob M. R.; Reynolds M. B.; Kerwin S. M. ‘’Synthesis and evaluation of anticancer benzoxazoles and benzimidazoles related to UK-1’’, Bioorg. Med. Chem., pp. 3997–4004, 2002.
  • [15]. Aboraia A. S.;Abdel‐Rahman H. M.; Mahfouz N. M.; EL‐Gendy M. A., ‘’Novel 5-(2-hydroxyphenyl)-3-substituted-2,3-dihydro-1,3,4-oxadiazole-2-thione derivatives: Promising anticancer agents’’ ,Bioorg. Med. Chem., pp. 1236‐1246, 2006.
  • [16] Ozbey S.,Ide S., Kendi E., ‘’The crystal and molecular structure of two benzimidazole derivatives: 1-(phenylmethyl)-2-(4-methoxyphenylmethyl)-1H-benzimidazole-5-carboxylic acid (I) and 1,2-di-(phenylmethyl)-1H-benzimidazole-5-carboxylic acid (II)’’, Journal of Molecular Structure, pp.23-30,1998.
  • [17] Göker H., Kus C., Boykin W. David., Yildiz S. And Altanlar N., ‘’Synthesis of bi functionalised flavins for incorporation into well defined redox systems’’, Bioorganic and Medicinal Chemistry, vol.10, pp. 2589-2596, 2002.
  • [18] Ozden S., Atabey D., Yildiz S. And Göker H., ‘’({4-[4-(1H-Benzimidazol-2-yl)phen¬yl]-1H-1,2,3-triazol-1-yl}meth¬oxy) ethanol’’ Bioorganic and Medicinal Chemistry, vol.13, pp. 1587-1597, 2005.
  • [19] Sahin E., İde S., Kurt M., Yurdakul S., ‘’Structural investigation of dibromobis (benzimidazole) Zn(II) complex’’, Journal of Mol. Structure, vol.616, pp. 259-264, 2002.
  • [20] Yurdakul S., Kurt M., ‘’Molecular structure and vibrational spectra of 1,2-bis(4-pyridyl) ethane by density functional theory and ab initio Hartree-Fock calculations’’ Journal of Mol. Structure, vol.650, pp. 181-190, 2003.
  • [21] S. Sudha, M. Karabacak, M. Kurt, M. Cinar, N. Sundaraganesan, ‘’FT-IR, FT-Raman, NMR and UV–vis spectra, vibrational assignments and DFT calculations of 4-butyl benzoic acid’’ Spectrochim Acta A,vol. 84,pp. 184-190, 2011.
  • [21] Güllüoglu M. Tahir.,Ozduran M., Kurt M., Kalaichelvan S., Sundaraganesan N., ‘’Molecular structure and vibrational spectra of 2- and 5-methyl benzimidazole molecules by density functional theory’’, Molecular and Biomolecular Spectroscopy, vol. 76, 107-114, 2010.
  • [22] N. Sundaraganesan, S. Ilakiamani, P. Subramani, B.D. Joshua, ‘’Molecular structure, vibrational, UV and NBO analysis of 4-chloro-7-nitrobenzofurazan by DFT calculations’’ Spectrochim. Acta A, vol. 67, pp.628, 2007.
  • [23] M.T. Gulluoglu, M. Ozduran, M. Kurt, S. Kalaichelvan, N. Sundaraganesan, ‘’Molecular structure, vibrational spectroscopic, first-order hyperpolarizability and HOMO, LUMO studies of 2-amino benzimidazole’’ Spectrochim. Acta A, vol. 107, 2010.
  • [24] M.T. Gulluoglu, Y. Erdogdu, J. Karpagam, N. Sundaraganesan, S¸ . Yurdakul, ‘’DFT, FT-Raman, FT-IR and FT-NMR studies of 4-phenylimidazole’’ J. Mol. Struct. Vol. 990, pp. 14-20, 2011.
  • [25] Sas Babur E., Kurt M., Karabacak M., Poiyamozhi A., Sundaraganesan N., ‘’Structural investigation of a self-assembled monolayer material 5-[(3-methylphenyl) (phenyl) amino] isophthalic acid for organic light-emitting devices’’ Journal of Molecular Structure, vol. 1081, pp. 506-518, 2015.
  • [26] Frisch, M. J., et al. Gaussian 09, Revision A. 02; Gaussian, Inc: Wallingford, CT, 2009. [27] P. Hohenberg, W. Kohn, ‘’Inhomogeneous Electron Gas’’, Phys. Rev. vol. 136, pp.B864, 1964.
  • [28] A.D. Becke, ‘’Density‐functional thermochemistry. III. The role of exact exchange’’, J. Chem. Phys. vol. 98, pp. 5648, 1993.
  • [29] M.H. Jamroz, ‘’Vibrational Energy Distribution Analysis (VEDA):Scopes and limitations’’, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy,vol. 114, pp. 220-230, 2013.
  • [30] G. Keresztury, S. Holly, J. Varga, G. Besenyei, A.Y. Wang, J.R. Durig, ‘’Vibrational spectra of monothiocarbamates-II. IR and Raman spectra, vibrational assignment, conformational analysis and ab initio calculations of S-methyl-N,N-dimethyl thiocarbamate’’ Spectrochim. Acta, vol. 49, pp. 1993, 2007.
  • [31] G. Keresztury, J.M. Chalmers, P.R. Griffith (Eds.), ‘’Raman Spectroscopy: Theory, Handbook of VibrationalSpectroscopy’’, vol. 1, John Wiley&Sons Ltd., New York, 2002.
  • [32] R. Ditchfield, ‘’Molecular Orbital Theory of Magnetic Shielding and Magnetic Susceptibility’’, J. Chem. Phys. vol.56, pp. 5688–5691, 1972.
  • [33] K. Wolinski, J.F. Hinton, P. Pulay, ‘’Efficient implementation of the gauge-independent atomic orbital method for NMR chemical shift calculations’’, J. Am. Chem. Soc., vol.112, pp. 8251–8260, 1990.
  • [34] N.M. O’Boyle, A.L. Tenderholt, K.M. Langner, ‘’A library for package-independent computational chemistry algorithms’’, J.Comp. Chem., vol. 29, pp. 839–845, 2008.
  • [35] Long-Huai Cheng, Zheng Zheng, Zhi-Li Han, Zhi-Chao Wu, Hong-Ping Zhou,
  • Acta Cryst., ‘’Rhombohedral boron subnitride, B~13~N~2~, by X-ray powder diffraction’’, 2012.
  • [36] P. Sinha, S. E. Boesch, C. Gu, R.A. Wheeler and A.K. Wilson, ‘’Harmonic Vibrational Frequencies: Scaling Factors for HF, B3LYP, and MP2 Methods in Combination with Correlation Consistent Basis Sets’’, The Journal of Phys. Chem., vol. 108, pp. 9213-9217, 2004.
  • [37] J. Coates, R.A. Meyers, ‘’Introduction to Infrared Spectrum, A Practical Approach’’,
  • John Wiley and Sons Ltd, Chichester, 2000.
  • [38] M. Karabacak, M. Kurt, A. Atac, ‘’Experimental and theoretical FT-IR and FT-Raman spectroscopic analysis of N1-methyl-2-chloroaniline’’ J. Phys. Org. Chem.vol. 22, pp. 321-330, 2009.
  • [39] G. Thilagavathi, M. Arivazhagan, ‘’Density functional theory calculation and vibrational spectroscopy study of 2-amino-4,6-dimethyl pyrimidine (ADMP)’’, Spectrochim. Acta,vol. 79A, pp. 389-395, 2010.
  • [40] M. Govindarajan, K. Ganasan, S. Periandy, M. Karabacak, ‘’Experimental (FT-IR and FT-Raman), electronic structure and DFT studies on 1-methoxynaphthalene’’ Spectrochim. Acta A, vol.79, pp. 646–653, 2011.
  • [41] R. Shanmugam, D. Sathyanarayana, ‘’Experimental (FT-IR and FT-Raman), electronic structure and DFT studies on 1-methoxynaphthalene’’, Spectrochim. Acta , vol.40A,pp. 757, 1984.
  • [42] M. Govindarajan, M. Karabacak, A. Suvitha, S. Periandy, ‘’FT-IR, FT-Raman, ab initio, HF and DFT studies, NBO, HOMO–LUMO and electronic structure calculations on 4-chloro-3-nitrotoluene’’, Spectrochim. Acta A, vol.89, pp. 137-148, 2012.
  • [43] G. Varsanyi, ‘’Assignments forVibrational Spectra of Seven Hundred Benzene
  • Derivatives’’, Halsted Press, 1974.
  • [44] A. Fu, D. Du, Z. Zhou, ‘’Density functional theory study of vibrational spectra of acridine and phenazine’’, Spectrochim. Acta, vol. 59, pp. 245, 2003.
  • [45] M. Karabacak, E. Sahin, M. Cinar, I. Erol, M. Kurt, ‘’X-ray, FT-Raman, FT-IR spectra and ab initio HF, DFT calculations of 2-[(5-methylisoxazol-3-yl)amino]-2-oxo-ethyl methacrylate’’, J. Mol. Struct., vol. 886, pp. 148-157, 2008.
  • [46] N. Sundaraganesan, S. Ilakiamani, P. Subramani, B.D. Joshua, ‘’Comparison of experimental and ab initio HF and DFT vibrational spectra of benzimidazole’’, Spectrochim. Acta, vol. 67A, pp. 628-635, 2007.
  • [47] Y. Wang, S. Saebo, C.U. Pittman, ‘’The structure of aniline by ab initio studies’’, J. Mol. Struct. Theochem, vol. 281, pp. 91-98, 1993.
  • [48] A. Altun, K. Golcuk, M. Kumru, ‘’Structure and vibrational spectra of p-methylaniline: Hartree-Fock, MP2 and density functional theory studies’’, J. Mol. Struct. Theochem, vol. 637 pp.155–169, 2003.
  • [49] T. Sivaranjini, S. Periandy, M. Govindarajan, M. Karabacak, A.M. Asiri, ‘’Spectroscopic (FT-IR, FT-Raman and NMR) and computational studies on 3-methoxyaniline’’, J. Mol.
  • Struct.,vol. 1056, pp. 176–188, 2014.
  • [50] G. Socrates, Infrared Characteristic Group Frequencies Tables and Charts, 3rd Edition, John Wiley and Sons, New York, 1980.
  • [51] D.A. Kleinman, ‘’Nonlinear Dielectric Polarization in Optical Media’’, Phys. Rev.,vol. 126, pp. 1962, 1977.
  • [52] N.B. Colthup, L.H. Daly, S.E. Wiberly, ‘’Introduction to Infrared and Raman
  • Spectroscopy’’, Academic Press, Third Edition New York, 1990.
  • [53] B. Venkataram Reddy, G. Ramana Rao, ‘’Transferable valence force fields for substituted benzenes: Part I. Monohalogenated anisoles’’, Vib. Spectrosc., vol.6, pp.231-250, 1994.
  • [54] P.B. Nagabalasubramanian, M. Karabacak, S. Periandy, ‘’Vibrational frequencies, structural confirmation stability and HOMO–LUMO analysis of nicotinic acid ethyl ester with experimental (FT-IR and FT-Raman) techniques and quantum mechanical calculations’’ ,J. Mol. Struct., vol. 1017, pp. 1-13, 2012.
  • [55] D.L. Vein, N.B. Colthup, W.G. Fateley, J.G. Grasselli, ‘’The Handbook of Infrared
  • and Raman Characteristic Frequencies of Organic Molecules’’, AcademicPress,
  • San Diego, 1991.
  • [56] R.M. Silverstein, F.X. Webster, ‘’Spectroscopic Identification of Organic Compound’’, sixth ed., John Willey&Sons, New York, 1998.
  • [57] B. Smith, ‘’Infrared Spectral Interpretation. A Systematic Approach’’, CRC Press,Washington, DC, 1999.
  • [58] C. Ravi kumar, I. Hubert Joe, V.S. Jayakumar, ‘’Charge transfer interactions and nonlinear optical properties of push–pull chromophore benzaldehyde phenylhydrazone: A vibrational approach’’, Chem. Phys. Lett., vol. 460, pp.552-558, 2008.
  • [59] E.D. Glendening, C.R. Landis, F. Weinhold, ‘’Natural bond orbital methods’’, Comput. Mol. Sci., vol. 2, pp. 1–42, 2011.
  • [60] A.E. Reed, L.A. Curtiss, F. ‘’Weinhold, Intermolecular interactions from a natural bond orbital, donor-acceptor viewpoint’’, Chem. Rev., vol. 88, pp.899, 1988.
  • [61] T. Schlick, ‘’Molecular Modeling and Simulation: An Inter disciplinary Guide’’,
  • second ed.,Springer, New York, 2010.
  • [62] K. Fukui, ‘’The Role of Frontier Orbitals in chemical reactions’’, Science, vol. 218, pp. 747–754, 1982.
  • [63] M. Arivazhagan, D. Anitha Rexalin, ‘’FT-IR, FT-Raman, NMR studies and ab initio-HF, DFT-B3LYP vibrational analysis of 4-chloro-2-fluoroaniline’’, Spectrochim. Acta A, vol.96, pp. 668–676, 2012.
  • [64] R. Hoffman, ‘’Solids and Surfaces: A Chemist’s View of Bonding in Extended
  • Structures’’, WILEY-VCH, 1988.
  • [65] T. Hughbanks, R. Hoffmann, ‘’Chains of trans-edge-sharing molybdenum octahedra: metal-metal bonding in extended systems’’, J. Am. Chem. Soc. vol.105, pp. 3528–3537, 1983.
  • [66] J.G. Małecki, ‘’Synthesis, crystal, molecular and electronic structures of thiocyanate ruthenium complexes with pyridine and its derivatives as ligands’’, Polyhedron vol. 29 pp. 1973–1979, 2010.
  • [67] M. Chen, U.V. Waghmare, C.M. Friend, E. Kaxiras, ‘’A density functional study of clean and hydrogen-covered α-MoO3(010):α-MoO3(010):Electronic structure and surface relaxation’’, J. Chem. Phys. vol. 109, pp. 6854–6860, 1998.
  • [68] J. Murray, K. Sen, ‘’Molecular Electrostatic Potentials: Concepts and Applications’’, 1 st edition, Elsevier, Amsterdam, 1996.
  • [69] E. Scrocco, J. Tomasi, ‘’Electronic Molecular Structure, Reactivity and Intermolecular Forces: An Euristic Interpretation by Means of Electrostatic Molecular Potentials’’, Advances in Quantum Chemistry, vol. 11, pp. 115-193, 1978.
  • [70] J.B. Ott, J. Boerio-Goates, ‘’Chemical Thermodynamics: Advanced Applications,
  • Calculations from Statistical Thermodynamics’’, Academic Press, 2000.
There are 80 citations in total.

Details

Subjects Chemical Engineering
Journal Section Research Articles
Authors

Emine Tanış

Publication Date June 1, 2017
Submission Date January 7, 2017
Acceptance Date March 28, 2017
Published in Issue Year 2017

Cite

APA Tanış, E. (2017). Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule. Sakarya University Journal of Science, 21(3), 545-563. https://doi.org/10.16984/saufenbilder.270275
AMA Tanış E. Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule. SAUJS. June 2017;21(3):545-563. doi:10.16984/saufenbilder.270275
Chicago Tanış, Emine. “Theoretical and Experimental Investigation Structural and Vibrational Spectra of 2-Methyl-1h-Benzimidazole-5-Carboxylic Acid Molecule”. Sakarya University Journal of Science 21, no. 3 (June 2017): 545-63. https://doi.org/10.16984/saufenbilder.270275.
EndNote Tanış E (June 1, 2017) Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule. Sakarya University Journal of Science 21 3 545–563.
IEEE E. Tanış, “Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule”, SAUJS, vol. 21, no. 3, pp. 545–563, 2017, doi: 10.16984/saufenbilder.270275.
ISNAD Tanış, Emine. “Theoretical and Experimental Investigation Structural and Vibrational Spectra of 2-Methyl-1h-Benzimidazole-5-Carboxylic Acid Molecule”. Sakarya University Journal of Science 21/3 (June 2017), 545-563. https://doi.org/10.16984/saufenbilder.270275.
JAMA Tanış E. Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule. SAUJS. 2017;21:545–563.
MLA Tanış, Emine. “Theoretical and Experimental Investigation Structural and Vibrational Spectra of 2-Methyl-1h-Benzimidazole-5-Carboxylic Acid Molecule”. Sakarya University Journal of Science, vol. 21, no. 3, 2017, pp. 545-63, doi:10.16984/saufenbilder.270275.
Vancouver Tanış E. Theoretical and experimental investigation structural and vibrational spectra of 2-methyl-1h-benzimidazole-5-carboxylic acid molecule. SAUJS. 2017;21(3):545-63.

30930 This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.