Research Article
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Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae)

Year 2023, Volume: 27 Issue: 6, 1174 - 1184, 18.12.2023
https://doi.org/10.16984/saufenbilder.1338063

Abstract

Aedes aegypti is an important vector organism responsible for carrying numerous arboviral pathogens and serious diseases, including yellow fever, Zika, Chikungunya, and Dengue fever. The CPP gene family, one of the crucial molecular defense systems, plays a significant role in the regulation of growth and development by controlling the production of proteins. In this study, a comprehensive genome analysis of the CPP gene family in Ae. aegypti was conducted. Each gene was thoroughly characterized, gene structures were examined, and conserved motifs were investigated. Additionally, the properties of these proteins were comprehensively analyzed. Expression analyses were performed to reveal the effects of CPP genes on development by calculating Reads Per Kilobase Million (RPKM) values. The findings emphasize the importance of CPP genes in controlling arboviral pathogens and understanding general stress responses in insects. The information derived from this research could contribute to the development of more effective intervention strategies for Ae. aegypti and other vector carriers to cope with stress. In conclusion, the systematic analysis of the CPP gene family in the Ae. aegypti genome is a crucial step in the management and development of effective disease prevention strategies for this species. Moreover, this study provides a significant foundation for future functional genomics research in understanding the structure and function of CPP genes.

Thanks

The author would like to thank Dr. Emre İlhan for his contributions.

References

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Year 2023, Volume: 27 Issue: 6, 1174 - 1184, 18.12.2023
https://doi.org/10.16984/saufenbilder.1338063

Abstract

References

  • [1] U. Ullah, Z. A. Buttar, A. Shalmani, I. Muhammad, A. Ud-Din, H. Ali, “Genome-wide identification and expression analysis of CPP-like gene family in Triticum aestivum L. under different hormone and stress conditions”, Open Life Sciences, vol. 17, pp. 544-562, 2022.
  • [2] L. Zhang, H. K. Zhao, Y. M. Wang, C. P. Yuan, Y. Y. Zhang, H. Y. Li, X. F. Yan, Q. Y. Li, Y. S. Dong, “Genomewide identification and expression analysis of the CPP-like gene family in soybean”, Genetics and Molecular Research, vol. 14, no.1, pp. 1260- 1268, 2015.
  • [3] T. Lu, Y. Dou, C. Zhang, “Fuzzy clustering of CPP family in plants with evolution and interaction analyses”, BMC Bioinformatics, vol. 14, no. Suppl 13, S10, 2013.
  • [4] Z. Yang, S. Gu, X. Wang, W. Li, Z. Tang, C. Xu, “Molecular Evolution of the CPP-like Gene Family in Plants: Insights from Comparative Genomics of Arabidopsis and Rice”, Journal of Molecular Evolution, vol. 67, pp. 266- 277, 2008.
  • [5] Y. Zhou, L. Hu, S. Ye, L. Jiang, S. Liu, “Genome-wide identification and characterization of cysteine-rich polycomb-like protein (CPP) family genes in cucumber (Cucumis sativus) and their roles in stress responses”, Biologia, vol. 73, pp. 425-435, 2018.
  • [6] A. Rakhimzhanova, A. G. Kasapoğlu, A. Sapakova, E. İlhan, R. Zharmukhametova, M. Turan, L. Zekenova, S. Muslu, L. Kazhygeldiyeva, M. Aydın, A. Çiltaş, “Expression analysis and characterization of the CPP gene family of Melatonin-treated common bean cultivars under different abiotic stresses,” South African Journal of Botany, vol. 160, pp. 282-294, 2023.
  • [7] M. Li, F. Wang, J. Ma, H. Liu, H. Ye, P. Zhao, J. Wang, “Comprehensive Evolutionary Analysis of CPP Genes in Brassica napus L. and Its Two Diploid Progenitors Revealing the Potential Molecular Basis of Allopolyploid Adaptive Advantage Under Salt Stress”, Frontiers in Plant Science, vol. 13, 873071, 2022.
  • [8] Y. Sun, X. Jia, D. Chen, Q. Fu, J. Chen, W. Yang, H. Yang, X. Xu, “GenomeWide Identification and Expression Analysis of Cysteine-Rich Polycomblike Protein (CPP) Gene Family in Tomato”, International Journal of Molecular Sciences, vol. 24, 5762, 2023.
  • [9] X. Y. Song, Y. Y. Zhang, F. C. Wu, L. Zhang, “Genome-wide analysis of the maize (Zea may L.) CPP-like gene family and expression profiling under abiotic stress”, Genetics and Molecular Research, vol. 15, no. 3, gmr.15038023, 2016.
  • [10] F. Ding, J. Fua, D. Jiang, M. Hao, G. Lina, “Mapping the spatial distribution of Aedes aegypti and Aedes albopictus”, Acta Tropica, vol. 178, pp. 155–162, 2018.
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  • [20] A. Zamyatin, P. Avdeyev, J. Liang, A. Sharma, C. Chen, V. Lukyanchikova, N. Alexeev, Z. Tu, M. A. Alekseyev, “Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis”, Gigascience, vol. 10, no. 3, giab017, 2021.
  • [21] J. Ghurye, S. Koren, S. T. Small, S. Redmond, P. Howell, A. M. Phillipy, N. J. Besansky, “A chromosome-scale assembly of the major African malaria vector Anopheles funestus”, Gigascience., vol. 8, no. 6, giz063, 2019.
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  • [24] M. D. Adams, S. E. Celniker, R. A. Holt, C. A. Evans, J. D. Gocayne, P. G. Amanatides, S. E. Scherer, P. W. Li, R. A. Hoskins, R. F. Galle, R. A. George, S. E. Lewis, S. Richards, M. Ashburner, S. N. Henderson, G. G. Sutton, J. R. Wortman, M. D. Yandell, Q. Zhang, L. X. Chen, et al., “The genome sequence of Drosophila melanogaster”, Science, vol. 287, no. 5461, pp. 2185-2195, 2000.
  • [25] I. Letunic, S. Khedkar, P. Bork, “SMART: recent updates, new developments and status in 2020”, Nucleic Acids Research, vol. 49, pp. D458–D460, 2021.
  • [26] J. D. Thompson, T. J. Gibson, F. Plewniak, F. Jeanmougin, D. G. Higgins, “The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools”, Nucleic Acids Research, vol. 25, pp. 4876-4882, 1997.
  • [27] I. Letunic, P. Bork, “Interactive Tree of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation”, Nucleic Acids Research, vol. 49, pp. W293–W296, 2021.
  • [28] T. A. Hall, “BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT”, Nucleic Acids Symposium Series, vol. 41, pp. 95-98, 1999.
  • [29] C. Chen, H. Chen, Y. Zhang, H. R. Thomas, M. H. Frank, Y. He, R. Xia, “TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data”, Molecular Plant, vol. 13, no. 8, pp. 1194-1202, 2020.
  • [30] E. Gasteiger, C. Hoogland, A. Gattiker, S. Duvaud, M. R. Wilkins, R. D. Appel, A. Bairoch, “Protein Identification and Analysis Tools on the Expasy Server,” In John M. Walker (Ed): The Proteomics Protocols Handbook, Humana Press, pp. 571-607, 2005.
  • [31] V. Thumuluri, J. J. A. Armenteros, A. R. Johansen, H. Nielsen, O. Winther, “DeepLoc 2.0: multi-label subcellular localization prediction using protein language models”, Nucleic Acids Research, vol. 50, no. W1, pp. W228– W234, 2022.
  • [32] B. Hu, J. Jin, A. Y. Guo, H. Zhang, J. Luo, G. Gao, “GSDS 2.0: an upgraded gene feature visualization server,” Bioinformatics, vol. 31, pp. 1296- 1297, 2015.
  • [33] T. L. Bailey, N. Williams, C. Misleh, W. W. Li, “MEME: discovering and analyzing DNA and protein sequence motifs,” Nucleic Acids Research, vol. 34, pp. W369-W373, 2006.
  • [34] A. Mortazavi, B. A. Williams, K. Mccue, L. Schaeffer, B. Wold, “Mapping and quantifying mammalian transcriptomes by RNA-Seq,” Nature Methods, vol. 5, pp. 621-628, 2008.

Details

Primary Language English
Subjects Biochemistry and Cell Biology (Other)
Journal Section Research Articles
Authors

Murat TURAN 0000-0003-2900-1755

Early Pub Date December 1, 2023
Publication Date December 18, 2023
Submission Date August 4, 2023
Acceptance Date October 3, 2023
Published in Issue Year 2023 Volume: 27 Issue: 6

Cite

APA TURAN, M. (2023). Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae). Sakarya University Journal of Science, 27(6), 1174-1184. https://doi.org/10.16984/saufenbilder.1338063
AMA TURAN M. Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae). SAUJS. December 2023;27(6):1174-1184. doi:10.16984/saufenbilder.1338063
Chicago TURAN, Murat. “Identification and Characterization of the CPP Gene Family in the Genome of Aedes Aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae)”. Sakarya University Journal of Science 27, no. 6 (December 2023): 1174-84. https://doi.org/10.16984/saufenbilder.1338063.
EndNote TURAN M (December 1, 2023) Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae). Sakarya University Journal of Science 27 6 1174–1184.
IEEE M. TURAN, “Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae)”, SAUJS, vol. 27, no. 6, pp. 1174–1184, 2023, doi: 10.16984/saufenbilder.1338063.
ISNAD TURAN, Murat. “Identification and Characterization of the CPP Gene Family in the Genome of Aedes Aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae)”. Sakarya University Journal of Science 27/6 (December 2023), 1174-1184. https://doi.org/10.16984/saufenbilder.1338063.
JAMA TURAN M. Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae). SAUJS. 2023;27:1174–1184.
MLA TURAN, Murat. “Identification and Characterization of the CPP Gene Family in the Genome of Aedes Aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae)”. Sakarya University Journal of Science, vol. 27, no. 6, 2023, pp. 1174-8, doi:10.16984/saufenbilder.1338063.
Vancouver TURAN M. Identification and Characterization of the CPP Gene Family in the Genome of Aedes aegypti L. (Yellow Fever Mosquito) (Diptera: Culicidae). SAUJS. 2023;27(6):1174-8.

Sakarya University Journal of Science (SAUJS)