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[Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı

Year 2021, Volume: 25 Issue: 2, 390 - 394, 20.08.2021
https://doi.org/10.19113/sdufenbed.874653

Abstract

Bu çalışmada yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) bileşiği sentezlendi ve bileşiğin kristal yapısı X-ışını kırınım yöntemiyle belirlendi. Kristalin X-ışınları analizi bileşiğin monoklinik P21/c uzay grubu ile, a=10.515 Å, b= 24.947 Å, c= 15.078 Å, 𝛼=90, β=134.215, γ=90, V=2834.8 Å3, Z=4 birim hücre parametrelerinde kristallendiğini gösterdi. Bileşikteki [Pd(SCN)4]-2 anyonu, Pd atomunun merkezi etrafında hafifçe bozulmuş bir kare geometriye sahiptir. Boroksin yapısında üç kovalent bağlı bor atomu hafifçe bozulmuş trigonal düzlemsel geometriye sahipken, dört kovalent bağlı bor atomları hafifçe bozulmuş tetrahedral geometriye sahiptir. Boroksin ile [Pd(SCN)4]-2 ‘nın kombinasyonundaki Pd-SCN···HO (boroksin), Pd-SCN···HO (su) ve O-H···O hidrojen bağ etkileşimleri 1D, 2D ve 3D periyodik yapılar oluşturmaktadır.

Supporting Institution

Balıkesir Üniversitesi Bilimsel Araştırma Projeleri Birimi

Project Number

BAP 2013/23

Thanks

Projemizi maddi olarak destekleyen Balıkesir Üniversitesi Bilimsel Araştırma Projeleri Birimi’ne (BAP 2013/23) teşekkür ederiz.

References

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  • [2] Dai, C., Cheng, Y., Cui, J., Wang, B. 2010. Click Reactions and Boronic Acids: Applications, Issues, and Potential Solutions. Molecules, 15(8), 5768-5781.
  • [3] Brooks, W. L., Sumerlin, B. S. 2016. Synthesis and Applications of Boronic Acid-Containing Polymers: from Materials to Medicine. Chemical Reviews, 116(3), 1375-1397.
  • [4] Pedireddi, V. R., Seetha Lekshmi, N. 2004. Boronic Acids in the Design and Synthesis of Supramolecular Assemblies. Tetrahedron Letters, 45(9), 1903-1906.
  • [5] Whyte, G. F., Vilar, R., Woscholski, R. 2013. Molecular Recognition with Boronic Acids-Applications in Chemical Biology. Journal of Chemical Biology, 6(4), 161-174.
  • [6] Hall, D. G. 2011. In Boronic Acids: Preparation and Applications in Organic Synthesis, Medicine and Materials, 2nd Edition, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.
  • [7] Cai, D., Larsen, R. D., Reider, P. J. 2002. Effective Lithiation of 3-bromopyridine: Synthesis of 3-Pyridine Boronic Acid and Variously 3-Substituted Pyridines. Tetrahedron Letters, 43(23), 4285-4287.
  • [8] Cambre, J. N., Sumerlin, B. S. 2011. Biomedical Applications of Bboronic Acid Polymers. Polymer, 52(21), 4631-4643.
  • [9] Yang, W., Gao, X., Wang, B. 2003. Boronic Acid Compounds as Potential Pharmaceutical Agents. Medicinal Research Reviews, 23(3), 346-368.
  • [10] Lee, J. H., Kim, Y., Ha, M. Y., Lee, E. K., Choo, J. 2005. Immobilization of Aminophenylboronic Acid on Magnetic Beads for the Direct Determination of Glycoproteins by Matrix Assisted Laser Desorption İonization Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 16(9), 1456-1460.
  • [11] Murabayashi, S., Nishide, T., Mitamura, Y. 2002. In Vitro Evaluation of Newly Developed Adsorbent for Selective Removal of Glycosylated Low‐Density Lipoprotein. Therapeutic Apheresis, 6(6), 425-430.
  • [12] Özdemir, A., Tuncel, A. 2000. Boronic Acid–Functionalized HEMA‐Based Gels for Nucleotide Adsorption. Journal of Applied Polymer Science, 78(2), 268-277.
  • [13] Bhat, S. S., Kumbhar, A. A., Heptullah, H., Khan, A. A., Gobre, V. V., Gejji, S. P., Puranik, V. G. 2011. Synthesis, Electronic Structure, DNA and Protein Binding, DNA Cleavage, and Anticancer Activity of Fluorophore-Labeled Copper (II) Complexes. Inorganic Chemistry, 50(2), 545-558.
  • [14] Braga, D., Polito, M., Bracaccini, M., D'Addario, D., Tagliavini, E., Sturba, L., Grepioni, F. 2003. Novel Organometallic Building Blocks for Molecular Crystal Engineering. 2. Synthesis and Characterization of Pyridyl and Pyrimidyl Derivatives of Diboronic Acid,[Fe(η5-C5H4-B (OH)2)2], and of Pyridyl Boronic Acid,[Fe(η5-C5H4-4-C5H4N)(η5-C5H4-B (OH) 2)]. Organometallics, 22(10), 2142-2150.
  • [15] Aakery, C. B., Salmon, D. J. 2005. Building Co-Crystals with Molecular Sense and Supramolecular Sensibility. CrystEngComm, 7, 439–448.
  • [16] Hassan, H. 2016. Preparation, Structural and Thermal Studies of Boroxine Adducts Having Aryl Boronic Acids and Pyrazoles. African Journal of Pure and Applied Chemistry, 10(4), 42-55.
  • [17] Campos-Gaxiola, J. J., García-Grajeda, B. A., Hernández-Ahuactzi, I. F., Guerrero-Álvarez, J. A., Höpfl, H., Cruz-Enríquez, A. 2017. Supramolecular Networks in Molecular Complexes of Pyridine Boronic Acids and Polycarboxylic Acids: Synthesis, Structural Characterization and Fluorescence Properties. CrystEngComm, 19(27), 3760-3775.
  • [18] Erkarslan, U., Donmez, A., Kara, H., Aygun, M., Coban, M. B. 2018. Synthesis, Structure and Photoluminescence Performance of a New Er 3+-Cluster-Based 2D Coordination Polymer. Journal of Cluster Science, 29(6), 1177-1183.
  • [19] Coban, M. B., Erkarslan, U., Oylumluoglu, G., Aygun, M., Kara, H. 2016. Hydrothermal Synthesis, Crystal Structure and Photoluminescent Properties; 3D Holmium (III) Coordination Polymer. Inorganica Chimica Acta, 447, 87-91.
  • [20] Kocak, C., Oylumluoglu, G., Donmez, A., Coban, M. B., Erkarslan, U., Aygun, M., Kara, H. 2017. Crystal Structure and Photoluminescence Properties of a New Monomeric Copper (II) Complex: Bis (3-{[(3-hydroxypropyl) imino] methyl}-4-nitrophenolato-κ3O, N, O′) Copper (II). Acta Crystallographica Section C: Structural Chemistry, 73(5), 414-419.
  • [21] Erkarslan, U., Oylumluoglu, G., Coban, M. B., Öztürk, E., Kara, H. 2016. Cyanide-Bridged Trinuclear MnIII–FeIII Assembly: Crystal Structure, Magnetic and Photoluminescence Behavior. Inorganica Chimica Acta, 445, 57-61.
  • [22] Donmez, A., Oylumluoglu, G., Coban, M. B., Kocak, C., Aygun, M., Kara, H. 2017. Ferromagnetic Interactions in New Double end-on-Azide-Bridged Dinuclear Ni (II) Complex: Synthesis, Crystal Structures, Magnetic and Photoluminescence Properties. Journal of Molecular Structure, 1149, 569-575.
  • [23] Kara, H., Adams, C. J., Schwarz, B., Orpen, A. G. 2011. The Use of [Fe (dithiooxalate) 2(NO)]2− as a Tecton in Crystal Engineering. CrystEngComm, 13(16), 5082-5087.
  • [24] Sadabs. 2008. SAINT V7. 60A, SHELXTL V6. 14. Bruker AXS Inc., Madison, Wisconsin, USA.
  • [25] Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A., Puschmann, H. 2009. OLEX2: a Complete Structure Solution, Refinement and Analysis Program. Journal of Applied Crystallography, 42(2), 339-341.
  • [26] Sheldrick, G. M. 2008. A short History of SHELX. Acta Crystallographica Section A: Foundations of Crystallography, 64(1), 112-122.
  • [27] Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Streek, J. V. D. 2006. Mercury: Visualization and Analysis of Crystal Structures. Journal of Applied Crystallography, 39(3), 453-457.

Synthesis and 3D Crystal Structure of New [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Compound of Containing [Pd(SCN)4]-2 and Boroxine

Year 2021, Volume: 25 Issue: 2, 390 - 394, 20.08.2021
https://doi.org/10.19113/sdufenbed.874653

Abstract

In this work, [C15H16B3N3O5].[Pd(SCN)4].2(H2O) has been synthesized and the crystal structure of the compound was determined by the X-ray diffraction method. X-Rays analysis shows the compound crystallizes in monoclinic system, space group P21/c, a=10.515 Å, b= 24.947 Å, c= 15.078 Å, 𝛼=90, β=134.215, γ=90, V=2834.8 Å3, Z=4. The anion [Pd(SCN)4]-2 in the compound has a slightly distorted square geometry around the center of the Pd atom. In the boroxine structure, the three covalent linked boron atom has a slightly distorted trigonal planar geometry while the four covalent linked boron atoms have a slightly distorted tetrahedral geometry. Pd-SCN···HO (boroxine), Pd-SCN···HO (water) and OH···O hydrogen bond interactions in combination of boroxine with [Pd(SCN)4]-2 forms 1D, 2D and 3D periodic structures.

Project Number

BAP 2013/23

References

  • [1] Kara, H., Adams, C. J., Orpen, A. G., Podesta, T. J. 2006. Pyridinium Boronic Acid Salts in Crystal Synthesis. New Journal of Chemistry, 30(10), 1461-1469.
  • [2] Dai, C., Cheng, Y., Cui, J., Wang, B. 2010. Click Reactions and Boronic Acids: Applications, Issues, and Potential Solutions. Molecules, 15(8), 5768-5781.
  • [3] Brooks, W. L., Sumerlin, B. S. 2016. Synthesis and Applications of Boronic Acid-Containing Polymers: from Materials to Medicine. Chemical Reviews, 116(3), 1375-1397.
  • [4] Pedireddi, V. R., Seetha Lekshmi, N. 2004. Boronic Acids in the Design and Synthesis of Supramolecular Assemblies. Tetrahedron Letters, 45(9), 1903-1906.
  • [5] Whyte, G. F., Vilar, R., Woscholski, R. 2013. Molecular Recognition with Boronic Acids-Applications in Chemical Biology. Journal of Chemical Biology, 6(4), 161-174.
  • [6] Hall, D. G. 2011. In Boronic Acids: Preparation and Applications in Organic Synthesis, Medicine and Materials, 2nd Edition, Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany.
  • [7] Cai, D., Larsen, R. D., Reider, P. J. 2002. Effective Lithiation of 3-bromopyridine: Synthesis of 3-Pyridine Boronic Acid and Variously 3-Substituted Pyridines. Tetrahedron Letters, 43(23), 4285-4287.
  • [8] Cambre, J. N., Sumerlin, B. S. 2011. Biomedical Applications of Bboronic Acid Polymers. Polymer, 52(21), 4631-4643.
  • [9] Yang, W., Gao, X., Wang, B. 2003. Boronic Acid Compounds as Potential Pharmaceutical Agents. Medicinal Research Reviews, 23(3), 346-368.
  • [10] Lee, J. H., Kim, Y., Ha, M. Y., Lee, E. K., Choo, J. 2005. Immobilization of Aminophenylboronic Acid on Magnetic Beads for the Direct Determination of Glycoproteins by Matrix Assisted Laser Desorption İonization Mass Spectrometry. Journal of the American Society for Mass Spectrometry, 16(9), 1456-1460.
  • [11] Murabayashi, S., Nishide, T., Mitamura, Y. 2002. In Vitro Evaluation of Newly Developed Adsorbent for Selective Removal of Glycosylated Low‐Density Lipoprotein. Therapeutic Apheresis, 6(6), 425-430.
  • [12] Özdemir, A., Tuncel, A. 2000. Boronic Acid–Functionalized HEMA‐Based Gels for Nucleotide Adsorption. Journal of Applied Polymer Science, 78(2), 268-277.
  • [13] Bhat, S. S., Kumbhar, A. A., Heptullah, H., Khan, A. A., Gobre, V. V., Gejji, S. P., Puranik, V. G. 2011. Synthesis, Electronic Structure, DNA and Protein Binding, DNA Cleavage, and Anticancer Activity of Fluorophore-Labeled Copper (II) Complexes. Inorganic Chemistry, 50(2), 545-558.
  • [14] Braga, D., Polito, M., Bracaccini, M., D'Addario, D., Tagliavini, E., Sturba, L., Grepioni, F. 2003. Novel Organometallic Building Blocks for Molecular Crystal Engineering. 2. Synthesis and Characterization of Pyridyl and Pyrimidyl Derivatives of Diboronic Acid,[Fe(η5-C5H4-B (OH)2)2], and of Pyridyl Boronic Acid,[Fe(η5-C5H4-4-C5H4N)(η5-C5H4-B (OH) 2)]. Organometallics, 22(10), 2142-2150.
  • [15] Aakery, C. B., Salmon, D. J. 2005. Building Co-Crystals with Molecular Sense and Supramolecular Sensibility. CrystEngComm, 7, 439–448.
  • [16] Hassan, H. 2016. Preparation, Structural and Thermal Studies of Boroxine Adducts Having Aryl Boronic Acids and Pyrazoles. African Journal of Pure and Applied Chemistry, 10(4), 42-55.
  • [17] Campos-Gaxiola, J. J., García-Grajeda, B. A., Hernández-Ahuactzi, I. F., Guerrero-Álvarez, J. A., Höpfl, H., Cruz-Enríquez, A. 2017. Supramolecular Networks in Molecular Complexes of Pyridine Boronic Acids and Polycarboxylic Acids: Synthesis, Structural Characterization and Fluorescence Properties. CrystEngComm, 19(27), 3760-3775.
  • [18] Erkarslan, U., Donmez, A., Kara, H., Aygun, M., Coban, M. B. 2018. Synthesis, Structure and Photoluminescence Performance of a New Er 3+-Cluster-Based 2D Coordination Polymer. Journal of Cluster Science, 29(6), 1177-1183.
  • [19] Coban, M. B., Erkarslan, U., Oylumluoglu, G., Aygun, M., Kara, H. 2016. Hydrothermal Synthesis, Crystal Structure and Photoluminescent Properties; 3D Holmium (III) Coordination Polymer. Inorganica Chimica Acta, 447, 87-91.
  • [20] Kocak, C., Oylumluoglu, G., Donmez, A., Coban, M. B., Erkarslan, U., Aygun, M., Kara, H. 2017. Crystal Structure and Photoluminescence Properties of a New Monomeric Copper (II) Complex: Bis (3-{[(3-hydroxypropyl) imino] methyl}-4-nitrophenolato-κ3O, N, O′) Copper (II). Acta Crystallographica Section C: Structural Chemistry, 73(5), 414-419.
  • [21] Erkarslan, U., Oylumluoglu, G., Coban, M. B., Öztürk, E., Kara, H. 2016. Cyanide-Bridged Trinuclear MnIII–FeIII Assembly: Crystal Structure, Magnetic and Photoluminescence Behavior. Inorganica Chimica Acta, 445, 57-61.
  • [22] Donmez, A., Oylumluoglu, G., Coban, M. B., Kocak, C., Aygun, M., Kara, H. 2017. Ferromagnetic Interactions in New Double end-on-Azide-Bridged Dinuclear Ni (II) Complex: Synthesis, Crystal Structures, Magnetic and Photoluminescence Properties. Journal of Molecular Structure, 1149, 569-575.
  • [23] Kara, H., Adams, C. J., Schwarz, B., Orpen, A. G. 2011. The Use of [Fe (dithiooxalate) 2(NO)]2− as a Tecton in Crystal Engineering. CrystEngComm, 13(16), 5082-5087.
  • [24] Sadabs. 2008. SAINT V7. 60A, SHELXTL V6. 14. Bruker AXS Inc., Madison, Wisconsin, USA.
  • [25] Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A., Puschmann, H. 2009. OLEX2: a Complete Structure Solution, Refinement and Analysis Program. Journal of Applied Crystallography, 42(2), 339-341.
  • [26] Sheldrick, G. M. 2008. A short History of SHELX. Acta Crystallographica Section A: Foundations of Crystallography, 64(1), 112-122.
  • [27] Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Streek, J. V. D. 2006. Mercury: Visualization and Analysis of Crystal Structures. Journal of Applied Crystallography, 39(3), 453-457.
There are 27 citations in total.

Details

Primary Language Turkish
Subjects Engineering
Journal Section Articles
Authors

Fümet Duygu Üstündağ 0000-0001-5290-8924

Hülya Kara Subasat 0000-0002-2032-8930

Elif Güngör 0000-0002-7158-9604

Project Number BAP 2013/23
Publication Date August 20, 2021
Published in Issue Year 2021 Volume: 25 Issue: 2

Cite

APA Üstündağ, F. D., Kara Subasat, H., & Güngör, E. (2021). [Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı. Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi, 25(2), 390-394. https://doi.org/10.19113/sdufenbed.874653
AMA Üstündağ FD, Kara Subasat H, Güngör E. [Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı. J. Nat. Appl. Sci. August 2021;25(2):390-394. doi:10.19113/sdufenbed.874653
Chicago Üstündağ, Fümet Duygu, Hülya Kara Subasat, and Elif Güngör. “[Pd(SCN)4]-2 Ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi Ve 3D Kristal Yapısı”. Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi 25, no. 2 (August 2021): 390-94. https://doi.org/10.19113/sdufenbed.874653.
EndNote Üstündağ FD, Kara Subasat H, Güngör E (August 1, 2021) [Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı. Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi 25 2 390–394.
IEEE F. D. Üstündağ, H. Kara Subasat, and E. Güngör, “[Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı”, J. Nat. Appl. Sci., vol. 25, no. 2, pp. 390–394, 2021, doi: 10.19113/sdufenbed.874653.
ISNAD Üstündağ, Fümet Duygu et al. “[Pd(SCN)4]-2 Ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi Ve 3D Kristal Yapısı”. Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi 25/2 (August 2021), 390-394. https://doi.org/10.19113/sdufenbed.874653.
JAMA Üstündağ FD, Kara Subasat H, Güngör E. [Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı. J. Nat. Appl. Sci. 2021;25:390–394.
MLA Üstündağ, Fümet Duygu et al. “[Pd(SCN)4]-2 Ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi Ve 3D Kristal Yapısı”. Süleyman Demirel Üniversitesi Fen Bilimleri Enstitüsü Dergisi, vol. 25, no. 2, 2021, pp. 390-4, doi:10.19113/sdufenbed.874653.
Vancouver Üstündağ FD, Kara Subasat H, Güngör E. [Pd(SCN)4]-2 ve Boroksin İçeren Yeni [C15H16B3N3O5].[Pd(SCN)4].2(H2O) Bileşiğin Sentezi ve 3D Kristal Yapısı. J. Nat. Appl. Sci. 2021;25(2):390-4.

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