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The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines

Year 2026, Volume: 15 Issue: 1 , 88 - 96 , 30.03.2026
https://doi.org/10.46810/tdfd.1817236
https://izlik.org/JA75MK27CT

Abstract

LRRK1 protein is sole paralog of LRRK2 protein, which plays a role in autosomal dominant Parkinson’s disease inheritance in humans. Both proteins share similar domain organization characteristics. Like LRRK2, LRRK1 also possesses kinase and GTPase activities. However, role of LRRK1 in pathogenesis of Parkinson’s disease remains poorly understood. In this study, we aimed to evaluate cytokine expression levels and expression of apoptotic and inflammatory proteins in commonly used HMC-3 microglial and SH-SY5Y neuroblastoma cell lines following inhibition of LRRK1 by IN04 inhibitor. Cytokine expression was assessed through IL-6, apoptosis via caspase-3 activation, and proliferation and inflammation through p38 phosphorylation. Additionally, effect of IN04 on α-synuclein expression was evaluated. Furthermore, the synergistic effect of IN04 with LPS was investigated, as LPS induces inflammation through TLR4 activation. To this end, four experimental groups were established: control, IN04, LPS, and IN04+LPS. According to our results, IN04 treatment increased α-synuclein expression in both HMC-3 and SH-SY5Y cells. IN04 treatment elevated caspase-3 activation and p38 phosphorylation in HMC-3 cells, whereas interestingly, it decreased both parameters in SH-SY5Y cells. Moreover, IN04 treatment increased IL-6 expression in HMC-3 cells, while in SH-SY5Y cells, combination of IN04 with LPS led to an increase in IL-6 expression.

Ethical Statement

I declare that all processes of the study are in accordance with research and publication ethics, and that I comply with ethical rules and scientific citation principles.

References

  • Rabin ML, Earnhardt MC, Patel A, Ganihong I, Kurlan R. Postural, Bone, and Joint Disorders in Parkinson’s Disease. Mov Disord Clin Pract. 2016 Nov 18;3(6):538–47.
  • Poewe W, Seppi K, Tanner CM, Halliday GM, Brundin P, Volkmann J, et al. Parkinson disease. Nat Rev Dis Primers. 2017 Mar 23;3(1):17013.
  • Wojewska DN, Kortholt A. LRRK2 Targeting Strategies as Potential Treatment of Parkinson’s Disease. Biomolecules. 2021 Jul 26;11(8):1101.
  • Zimprich A, Biskup S, Leitner P, Lichtner P, Farrer M, Lincoln S, et al. Mutations in LRRK2 Cause Autosomal-Dominant Parkinsonism with Pleomorphic Pathology. Neuron. 2004 Nov;44(4):601–7.
  • Soliman A, Cankara FN, Kortholt A. Allosteric inhibition of LRRK2, where are we now. Biochem Soc Trans. 2020 Oct 30;48(5):2185–94.
  • Harada JN, Bower KE, Orth AP, Callaway S, Nelson CG, Laris C, et al. Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis. Genome Res. 2005 Aug;15(8):1136–44.
  • van Velsen EFS, Demirdas S, Hanff D, Zillikens MC. Osteosclerotic Metaphyseal Dysplasia Due to a Likely Pathogenic LRRK1 Variant as a Cause of Recurrent Long Bone Fractures. JBMR Plus. 2023;7(8).
  • Xing WR, Goodluck H, Zeng C, Mohan S. Role and mechanism of action of leucine-rich repeat kinase 1 in bone. Vol. 5, Bone Research. 2017.
  • Korr D, Toschi L, Donner P, Pohlenz HD, Kreft B, Weiss B. LRRK1 protein kinase activity is stimulated upon binding of GTP to its Roc domain. Cell Signal. 2006;18(6).
  • Hanafusa H, Yagi T, Ikeda H, Hisamoto N, Nishioka T, Kaibuchi K, et al. LRRK1 phosphorylation of Rab7 at S72 links trafficking of EGFR-containing endosomes to its effector RILP. J Cell Sci. 2019 Jun 1;132(11).
  • Fujita K, Kedashiro S, Yagi T, Hisamoto N, Matsumoto K, Hanafusa H. The ULK complex–LRRK1 axis regulates Parkin-mediated mitophagy via Rab7 Ser-72 phosphorylation. J Cell Sci. 2022 Dec 1;135(23).
  • Chen Z, Xing W, Fan L. Chemical IN04 Inhibits the Kinase Domain not the ROC Domain of LRRK1: Results from Homology Modeling and Molecular Docking. Med Chem (Los Angeles). 2020;17(10).
  • Malik AU, Karapetsas A, Nirujogi RS, Chatterjee D, Phung TK, Wightman M, et al. PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074 and Thr1075) within the CORB GTPase domain. Biochemical Journal. 2022;479(18).
  • Parisiadou L, Yu J, Sgobio C, Xie C, Liu G, Sun L, et al. LRRK2 regulates synaptogenesis and dopamine receptor activation through modulation of PKA activity. Nat Neurosci. 2014 Mar 26;17(3):367–76.
  • Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, et al. Phosphoproteomics reveals that Parkinson’s disease kinase LRRK2 regulates a subset of Rab GTPases. Elife. 2016 Jan 29;5.
  • Nichols RJ, Dzamko N, Morrice NA, Campbell DG, Deak M, Ordureau A, et al. 14-3-3 binding to LRRK2 is disrupted by multiple Parkinson’s disease-associated mutations and regulates cytoplasmic localization. Biochemical Journal. 2010 Sep 15;430(3):393–404.
  • Ishikawa K, Nara A, Matsumoto K, Hanafusa H. EGFR-dependent phosphorylation of leucine-rich repeat kinase LRRK1 is important for proper endosomal trafficking of EGFR. Mol Biol Cell. 2012;23(7).
  • Romano R, Bucci C. Role of EGFR in the Nervous System. Cells. 2020 Aug 12;9(8):1887.
  • Toyofuku T, Morimoto K, Sasawatari S, Kumanogoh A. Leucine-Rich Repeat Kinase 1 Regulates Autophagy through Turning On TBC1D2-Dependent Rab7 Inactivation. Mol Cell Biol. 2015;35(17).
  • Zhou L, Wang Y, Liu Y, Zhu F, Gao G, Li C, et al. Dynein‐Dependent Endo‐Lysosomal Degradation Drives Lewy Body Disorders Accompanied by Aβ Pathology. Advanced Science. 2025 Jul 18;
  • Xu X, Li J, Wang F, Xue K, He J, Meng X, et al. Genetic and pathway complexity in Alzheimer’s disease: Insights from multi-omic data about the immune response and mitochondrial function. Neural Regen Res. 2025 Sep 29;
  • Schulte EC, Ellwanger DC, Dihanich S, Manzoni C, Stangl K, Schormair B, et al. Rare variants in LRRK1 and Parkinson’s disease. Neurogenetics. 2014;15(1). Si M, Zeng C, Goodluck H, Shen S, Mohan S, Xing W. A small molecular inhibitor of LRRK1 identified by homology modeling and virtual screening suppresses osteoclast function, but not osteoclast differentiation, in vitro. Aging. 2019;11(10).
  • Iaccarino C, Crosio C, Vitale C, Sanna G, Carrì MT, Barone P. Apoptotic mechanisms in mutant LRRK2-mediated cell death. Hum Mol Genet. 2007 Jun 1;16(11):1319–26.
  • Cuenda A, Rousseau S. p38 MAP-Kinases pathway regulation, function and role in human diseases. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2007 Aug;1773(8):1358–75.
  • Hirano T, Yasukawa K, Harada H, Taga T, Watanabe Y, Matsuda T, et al. Complementary DNA for a novel human interleukin (BSF-2) that induces B lymphocytes to produce immunoglobulin. Nature. 1986 Nov;324(6092):73–6.
  • Yin X, Kim K, Suetsugu H, Bang SY, Wen L, Koido M, et al. Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus. Ann Rheum Dis. 2021 May;80(5):632–40.
  • Tietz AK, Angstwurm K, Baumgartner T, Doppler K, Eisenhut K, Elisak M, et al. Genome-wide Association Study Identifies 2 New Loci Associated With Anti-NMDAR Encephalitis. Neurol Neuroimmunol Neuroinflamm. 2021;8(6).

HMC-3 ve SH-SY5Y Hücre Hatlarında LRRK1 İnhibisyonunun ve TLR4 Aktivasyonunun, Apoptotik, İnflamatuar Parametreler ve α-Sinüklein Ekspresyonu Üzerindeki Sinerjistik Etkileri

Year 2026, Volume: 15 Issue: 1 , 88 - 96 , 30.03.2026
https://doi.org/10.46810/tdfd.1817236
https://izlik.org/JA75MK27CT

Abstract

LRRK1 proteini insanda otozomal dominant Parkinson kalıtımında rol oynayan LRRK2 proteinin tek paralogudur. Her iki protein domain organizasyonu açısından benzer özelliklere sahiptir. LRRK1 proteini de LRRK2 proteini gibi kinaz ve GTPaz aktivitesine sahiptir. LRRK1 proteinin Parkinson patogenezindeki rolü tam anlaşılamamıştır. Bu sebeple yapmış olduğumuz çalışmada LRRK1 proteinin IN04 inhibitörü ile inhibe edilmesi sonucu Parkinson araştırmalarında yaygın olarak kullanılan HMC-3 mikroglia hattı ve SH-SY5Y nöroblastoma hücre hatları üzerindeki sitokin ekspresyon düzeylerinin değerlendirilmesi ve apoptotik, inflamatuvar proteinlerin ekspresyon düzeylerinin belirlenmesi hedeflenmiştir. Sitokin ekspreyonu IL-6 üzerinden, apoptoz kaspaz-3 aktivasyonu üzerinden, proliferasyon ve inflamasyon p38 fosforilasyonu üzerinden değerlendirilmiştir. Ayrıca IN04’un α-sinüklein ekspresyonu üzerinden etkisi değerlendirilmiştir. Bunun yanında LPS uygulanması sonucu IN04’ un LPS ile sinerjistik etkisi tespit edilmiştir. LPS, TLR4 aktivasyonuna yol açarak inflamasyon sürecini başlatmaktadır. Bu amaçla yapmış olduğumuz çalışmada kontrol, IN04, LPS, IN04+LPS olmak üzere 4 adet deney grubu oluşturulmuştur. Elde ettiğimiz verilere göre IN04 uygulaması sonucu HMC-3 ve SH-SY5Y hücrelerinde α-sinüklein ekspresyonu artmaktadır. IN04 uygulaması HMC-3 hücrelerinde kaspaz-3 aktivasyonunu ve p38 fosforilasyonunu artırırken, ilginç bir şekilde SH-SY5Y hücrelerinde kaspaz-3 aktivasyonu ve p38 fosforilasyonunu azaltmaktadır. IN04 uygulamasına bağlı olarak HMC-3 hücrelerinde IL-6 ekspreyonu artarken, SH-SY5Y hücrelerinde IN04’un LPS ile kombinasyonu sonucu IL-6 ekspresyonu artmaktadır.

Ethical Statement

Çalışmanın tüm süreçlerinin araştırma ve yayın etiğine uygun olduğunu, etik kurallara ve bilimsel atıf gösterme ilkelerine uyduğumu beyan ederim.

References

  • Rabin ML, Earnhardt MC, Patel A, Ganihong I, Kurlan R. Postural, Bone, and Joint Disorders in Parkinson’s Disease. Mov Disord Clin Pract. 2016 Nov 18;3(6):538–47.
  • Poewe W, Seppi K, Tanner CM, Halliday GM, Brundin P, Volkmann J, et al. Parkinson disease. Nat Rev Dis Primers. 2017 Mar 23;3(1):17013.
  • Wojewska DN, Kortholt A. LRRK2 Targeting Strategies as Potential Treatment of Parkinson’s Disease. Biomolecules. 2021 Jul 26;11(8):1101.
  • Zimprich A, Biskup S, Leitner P, Lichtner P, Farrer M, Lincoln S, et al. Mutations in LRRK2 Cause Autosomal-Dominant Parkinsonism with Pleomorphic Pathology. Neuron. 2004 Nov;44(4):601–7.
  • Soliman A, Cankara FN, Kortholt A. Allosteric inhibition of LRRK2, where are we now. Biochem Soc Trans. 2020 Oct 30;48(5):2185–94.
  • Harada JN, Bower KE, Orth AP, Callaway S, Nelson CG, Laris C, et al. Identification of novel mammalian growth regulatory factors by genome-scale quantitative image analysis. Genome Res. 2005 Aug;15(8):1136–44.
  • van Velsen EFS, Demirdas S, Hanff D, Zillikens MC. Osteosclerotic Metaphyseal Dysplasia Due to a Likely Pathogenic LRRK1 Variant as a Cause of Recurrent Long Bone Fractures. JBMR Plus. 2023;7(8).
  • Xing WR, Goodluck H, Zeng C, Mohan S. Role and mechanism of action of leucine-rich repeat kinase 1 in bone. Vol. 5, Bone Research. 2017.
  • Korr D, Toschi L, Donner P, Pohlenz HD, Kreft B, Weiss B. LRRK1 protein kinase activity is stimulated upon binding of GTP to its Roc domain. Cell Signal. 2006;18(6).
  • Hanafusa H, Yagi T, Ikeda H, Hisamoto N, Nishioka T, Kaibuchi K, et al. LRRK1 phosphorylation of Rab7 at S72 links trafficking of EGFR-containing endosomes to its effector RILP. J Cell Sci. 2019 Jun 1;132(11).
  • Fujita K, Kedashiro S, Yagi T, Hisamoto N, Matsumoto K, Hanafusa H. The ULK complex–LRRK1 axis regulates Parkin-mediated mitophagy via Rab7 Ser-72 phosphorylation. J Cell Sci. 2022 Dec 1;135(23).
  • Chen Z, Xing W, Fan L. Chemical IN04 Inhibits the Kinase Domain not the ROC Domain of LRRK1: Results from Homology Modeling and Molecular Docking. Med Chem (Los Angeles). 2020;17(10).
  • Malik AU, Karapetsas A, Nirujogi RS, Chatterjee D, Phung TK, Wightman M, et al. PKC isoforms activate LRRK1 kinase by phosphorylating conserved residues (Ser1064, Ser1074 and Thr1075) within the CORB GTPase domain. Biochemical Journal. 2022;479(18).
  • Parisiadou L, Yu J, Sgobio C, Xie C, Liu G, Sun L, et al. LRRK2 regulates synaptogenesis and dopamine receptor activation through modulation of PKA activity. Nat Neurosci. 2014 Mar 26;17(3):367–76.
  • Steger M, Tonelli F, Ito G, Davies P, Trost M, Vetter M, et al. Phosphoproteomics reveals that Parkinson’s disease kinase LRRK2 regulates a subset of Rab GTPases. Elife. 2016 Jan 29;5.
  • Nichols RJ, Dzamko N, Morrice NA, Campbell DG, Deak M, Ordureau A, et al. 14-3-3 binding to LRRK2 is disrupted by multiple Parkinson’s disease-associated mutations and regulates cytoplasmic localization. Biochemical Journal. 2010 Sep 15;430(3):393–404.
  • Ishikawa K, Nara A, Matsumoto K, Hanafusa H. EGFR-dependent phosphorylation of leucine-rich repeat kinase LRRK1 is important for proper endosomal trafficking of EGFR. Mol Biol Cell. 2012;23(7).
  • Romano R, Bucci C. Role of EGFR in the Nervous System. Cells. 2020 Aug 12;9(8):1887.
  • Toyofuku T, Morimoto K, Sasawatari S, Kumanogoh A. Leucine-Rich Repeat Kinase 1 Regulates Autophagy through Turning On TBC1D2-Dependent Rab7 Inactivation. Mol Cell Biol. 2015;35(17).
  • Zhou L, Wang Y, Liu Y, Zhu F, Gao G, Li C, et al. Dynein‐Dependent Endo‐Lysosomal Degradation Drives Lewy Body Disorders Accompanied by Aβ Pathology. Advanced Science. 2025 Jul 18;
  • Xu X, Li J, Wang F, Xue K, He J, Meng X, et al. Genetic and pathway complexity in Alzheimer’s disease: Insights from multi-omic data about the immune response and mitochondrial function. Neural Regen Res. 2025 Sep 29;
  • Schulte EC, Ellwanger DC, Dihanich S, Manzoni C, Stangl K, Schormair B, et al. Rare variants in LRRK1 and Parkinson’s disease. Neurogenetics. 2014;15(1). Si M, Zeng C, Goodluck H, Shen S, Mohan S, Xing W. A small molecular inhibitor of LRRK1 identified by homology modeling and virtual screening suppresses osteoclast function, but not osteoclast differentiation, in vitro. Aging. 2019;11(10).
  • Iaccarino C, Crosio C, Vitale C, Sanna G, Carrì MT, Barone P. Apoptotic mechanisms in mutant LRRK2-mediated cell death. Hum Mol Genet. 2007 Jun 1;16(11):1319–26.
  • Cuenda A, Rousseau S. p38 MAP-Kinases pathway regulation, function and role in human diseases. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research. 2007 Aug;1773(8):1358–75.
  • Hirano T, Yasukawa K, Harada H, Taga T, Watanabe Y, Matsuda T, et al. Complementary DNA for a novel human interleukin (BSF-2) that induces B lymphocytes to produce immunoglobulin. Nature. 1986 Nov;324(6092):73–6.
  • Yin X, Kim K, Suetsugu H, Bang SY, Wen L, Koido M, et al. Meta-analysis of 208370 East Asians identifies 113 susceptibility loci for systemic lupus erythematosus. Ann Rheum Dis. 2021 May;80(5):632–40.
  • Tietz AK, Angstwurm K, Baumgartner T, Doppler K, Eisenhut K, Elisak M, et al. Genome-wide Association Study Identifies 2 New Loci Associated With Anti-NMDAR Encephalitis. Neurol Neuroimmunol Neuroinflamm. 2021;8(6).
There are 27 citations in total.

Details

Primary Language English
Subjects Cell Neurochemistry
Journal Section Research Article
Authors

Furkan İlker Özbalcı 0000-0002-0086-4090

Nilgün Gürbüz 0000-0003-4476-5593

Submission Date November 4, 2025
Acceptance Date December 29, 2025
Publication Date March 30, 2026
DOI https://doi.org/10.46810/tdfd.1817236
IZ https://izlik.org/JA75MK27CT
Published in Issue Year 2026 Volume: 15 Issue: 1

Cite

APA Özbalcı, F. İ., & Gürbüz, N. (2026). The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines. Türk Doğa Ve Fen Dergisi, 15(1), 88-96. https://doi.org/10.46810/tdfd.1817236
AMA 1.Özbalcı Fİ, Gürbüz N. The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines. TJNS. 2026;15(1):88-96. doi:10.46810/tdfd.1817236
Chicago Özbalcı, Furkan İlker, and Nilgün Gürbüz. 2026. “The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines”. Türk Doğa Ve Fen Dergisi 15 (1): 88-96. https://doi.org/10.46810/tdfd.1817236.
EndNote Özbalcı Fİ, Gürbüz N (March 1, 2026) The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines. Türk Doğa ve Fen Dergisi 15 1 88–96.
IEEE [1]F. İ. Özbalcı and N. Gürbüz, “The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines”, TJNS, vol. 15, no. 1, pp. 88–96, Mar. 2026, doi: 10.46810/tdfd.1817236.
ISNAD Özbalcı, Furkan İlker - Gürbüz, Nilgün. “The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines”. Türk Doğa ve Fen Dergisi 15/1 (March 1, 2026): 88-96. https://doi.org/10.46810/tdfd.1817236.
JAMA 1.Özbalcı Fİ, Gürbüz N. The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines. TJNS. 2026;15:88–96.
MLA Özbalcı, Furkan İlker, and Nilgün Gürbüz. “The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines”. Türk Doğa Ve Fen Dergisi, vol. 15, no. 1, Mar. 2026, pp. 88-96, doi:10.46810/tdfd.1817236.
Vancouver 1.Furkan İlker Özbalcı, Nilgün Gürbüz. The Synergistic Effects of LRRK1 Inhibition and TLR4 Activation on Apoptotic, Inflammatory Parameters and α-Synuclein Expression in HMC-3 and SH-SY5Y Cell Lines. TJNS. 2026 Mar. 1;15(1):88-96. doi:10.46810/tdfd.1817236

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