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Çorum Çevresindeki Yayla Topraklarından İzole Edilen Actinobacteria Üyelerinin Biyosentetik Genlerinin Taranması

Year 2021, Volume: 8 Issue: 2, 280 - 285, 23.04.2021
https://doi.org/10.30910/turkjans.715700

Abstract

Bu çalışmada, Çorum (Kargı ve Osmancık) çevresindeki yaylalardan izole edilen aktinomiset izolatlarının poliketit sentaz ve ribozomal olmayan peptit sentetaz biyosentetik sistemlerinin varlığı moleküler tekniklerle araştırılmıştır. Toplamda 15 tane Actinobacteria üyesinin sekonder metabolit biyosentetik genlerinin (PKS I-II/NRPS) varlığı PCR temelli incelenmiştir. Yapılan çalışmanın sonuçlarına göre, 15 tane aktinomiset izolatının 7 tanesi PKS-I, 11 tanesi PKS-II ve 14 tanesinin NRPS gen bölgesine sahip olduğu bulunmuştur. Sonuçlar değerlendirildiğinde izolatların nonribozomal peptid sentetaz (NRPS) gen kümelerini tip I-II poliketit sentazlar (PKS-I-II) gen kümelerinden daha fazla içerdiği görülmüştür. Ayrıca 5 izolatın üç gen kümesini bir arada bulundurduğu tespit edilmiştir. Sonuç olarak yaylalardan izole edilen aktinomisetlerin yüksek sekonder metabolit üretme kapasitesine sahip olduğu görülmüştür.

Supporting Institution

Hitit Üniversitesi Bilimsel Araştırma Projeleri Koordinasyon Birimi tarafından desteklenmiştir.

Project Number

ODMYO19003.18.001

Thanks

Çalışmaya olan katkılarından dolayı Ondokuz Mayıs Üniversitesi Moleküler Biyoloji ve Genetik Bölüm Başkanı Prof. Dr. Nevzat ŞAHİN’e şükranlarımı sunuyorum.

References

  • Referans1 Ayuso-Sacido A and Genilloud O. 2005. New PCR Primers for the Screening of NRPS and PKS-I Systems in Actinomycetes: Detection and Distribution of These Biosynthetic Gene Sequences in Major Taxonomic Groups, Microbial Ecology., 49:10-24.
  • Referans2 Cai Y, Xue Q, Chen Z and Zhang R. 2009. Study on Cellulose-decomposed Actinomycetes in Soil in the Eastern of the Qinghai Plateau, Modern Applied Science, 3(2):83.
  • Referans3 Colquhoun JA, Heald CS, Li L, Tamaoka J and others. 1998. Taxonomy and biotransformation activities of some deep sea actinomycetes, Extremophiles, 2:269-277.
  • Referans4 Gonzalez I, Ayuso-Sacido A, Anderson A and Genilloud O. 2005. Actinomycetes isolated from lichens: Evaluation of their diversity and detection of biosynthetic gene sequences, FEMS Microbiology Ecology, 54:401-415.
  • Referans5 Goodfellow M, Stainsby FM, Davenport R, Chun J and Curtis TP. 1998. Activated sludge foaming: the true extent of actinomycetes diversity, Water Sci. Technol., 37:511-519.
  • Referans6 Hertweck C. 2009. The Biosynthetic Logic of Polyketide Diversity, Angew. Chem. Int. Ed., 48:4688-4716.
  • Referans7 Isik K, Gencbay T, Ozdamir-Kocak F and Cil E. 2014. Molecular identification of different actinomycetes isolated from East Black Sea region plateau soil by 16S rDNA gene sequencing, Afr. J. Microbiol. Res., 8(9):878-887.
  • Referans8 Kuster E. 1968. The actinomycetes. In: Soil Biology, eds. Burges (A.) & Raw (F.), Academic Press, London.
  • Referans9 Kroken S, Glass NL, Taylor JW, Yoder OC and Turgeon BG. 2003. Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes, Proceedings of the National Academy of Sciences of the United States of America, 100:15670-15675.
  • Referans10 Lam KS. 2006. Discovery of novel metabolites from marine actinomycetes, Curr. Opin. Microbiol., 9:245-251.
  • Referans11 Metsä-Ketelä M, Salo V, Halo L, Hautala A, Hakala J, Mäntsälä P and Ylihonko K. 1999. An efficient approach for screening minimal PKS genes from Streptomyces, FEMS Microbiol. Lett., 180:1-6.
  • Referans12 Ndonde MJM and Semu E. 2000. Preliminary characterization of some Streptomyces species from four Tanzanian soils and their antimicrobial potential against selected plant and animal pathogenic bacteria, World J. Microbiol. Biotechnol., 16:595-599.
  • Referans13 Osbourn A. 2010. Secondary metabolic gene clusters: Evolutionary toolkits for chemical innovation, Trends Genet., 26:449-457.
  • Referans14 Oskay M, Tamer AU and Azeri C. 2004. Antibacterial activity of some Actinomycetes isolated from farming soils of Turkey, Afr. J. Biotechnol., 3:441-446.
  • Referans15 Özcan K. 2017. Trabzon (Karadeniz) Deniz Sedimentlerinden Elde Edilen Denizel Aktinomisetlerin Sekonder Metabolit Biyosentez Genlerinin Taranması, Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 5(5):502-506.
  • Referans16 Pascual J, González I, Estévez M, Benito P, Trujillo ME, et al. 2016. Description of Kibdelosporangium banguiense sp. nov., a novel actinomycete isolated from soil of the forest of Pama, on the plateau of Bangui, Central African Republic. Antonie van Leeuwenhoek, 109:685-695.
  • Referans17 Sacramento DR, Coelho RRR, Wigg MD, Linhares LFTL, Santos MGM and Semedo LTAS. 2004. Antimicrobial and antiviral activities of an actinomycetes (Streptomycin sp.) isolated from a Brazilian tropical forest soil, World. J. Microbiol. Biotechnol., 20:225-229.
  • Referans18 Shen B. 2003. Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms, Curr. Opin. Chem. Biol., 7:285-295.
  • Referans19 Takizawa M, Colwel RR and Hill RT. 1993. Isolation and diversity of actinomycetes in the Chesapeake Bay, Appl. Environ. Microbiol., 59:997-1002.
  • Referans20 Terkina IA, Drukker VV, Parfenova VV and Kostornova TY. 2002. The biodiversity of actinomycetes in Lake Baikal, Microbiology, 71:346-349.
  • Referans21 Wang Y, Zhang ZS, Ruan JS, Wang YM and Ali SM. 1999. Investigation of actinomycete diversity in the tropical rainforests of Singapore, J. Ind. Microbiol., 23:178-187.
  • Referans22 Weber T and Marahiel MA. 2001. Exploring the domain structure of modular nonribosomal peptite synthetases, Structure, 9:3-9.
  • Referans23 Ventosa A, Mellado E, Sanchez-Porro C and Marquez MC. 2008. Halophilic and halotolerant microorganism from soils, In: Dion, P, Nautiyal, C.S (eds) Microbiology of extreme soils. Springer-Verlag, Berlin, Heidelberg, pp. 87-115.
  • Referans24 Von Dohren H, Dieckmann R and Pavela-Vrancic M. 1999. The nonribosomal code, Chemistry and Biology, 6:273-279.
  • Referans25 Zhao J, Shao Y, Zhao Z, Liu F, Zhou H and Li Z. 2011. Diversity of Fungi and Actinomycetes in Soil of Enclosed and Grazing Wetland on Inner Mongolian Plateau, Advanced Materials Research Vols. 356-360, pp.2703-2706.
  • Referans26 Zocher R and Keller U. 1997. Thiol template peptite synthesis systems in bacteria and fungi, Advances in Microbial Physiology, 38:85-131.
Year 2021, Volume: 8 Issue: 2, 280 - 285, 23.04.2021
https://doi.org/10.30910/turkjans.715700

Abstract

Project Number

ODMYO19003.18.001

References

  • Referans1 Ayuso-Sacido A and Genilloud O. 2005. New PCR Primers for the Screening of NRPS and PKS-I Systems in Actinomycetes: Detection and Distribution of These Biosynthetic Gene Sequences in Major Taxonomic Groups, Microbial Ecology., 49:10-24.
  • Referans2 Cai Y, Xue Q, Chen Z and Zhang R. 2009. Study on Cellulose-decomposed Actinomycetes in Soil in the Eastern of the Qinghai Plateau, Modern Applied Science, 3(2):83.
  • Referans3 Colquhoun JA, Heald CS, Li L, Tamaoka J and others. 1998. Taxonomy and biotransformation activities of some deep sea actinomycetes, Extremophiles, 2:269-277.
  • Referans4 Gonzalez I, Ayuso-Sacido A, Anderson A and Genilloud O. 2005. Actinomycetes isolated from lichens: Evaluation of their diversity and detection of biosynthetic gene sequences, FEMS Microbiology Ecology, 54:401-415.
  • Referans5 Goodfellow M, Stainsby FM, Davenport R, Chun J and Curtis TP. 1998. Activated sludge foaming: the true extent of actinomycetes diversity, Water Sci. Technol., 37:511-519.
  • Referans6 Hertweck C. 2009. The Biosynthetic Logic of Polyketide Diversity, Angew. Chem. Int. Ed., 48:4688-4716.
  • Referans7 Isik K, Gencbay T, Ozdamir-Kocak F and Cil E. 2014. Molecular identification of different actinomycetes isolated from East Black Sea region plateau soil by 16S rDNA gene sequencing, Afr. J. Microbiol. Res., 8(9):878-887.
  • Referans8 Kuster E. 1968. The actinomycetes. In: Soil Biology, eds. Burges (A.) & Raw (F.), Academic Press, London.
  • Referans9 Kroken S, Glass NL, Taylor JW, Yoder OC and Turgeon BG. 2003. Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes, Proceedings of the National Academy of Sciences of the United States of America, 100:15670-15675.
  • Referans10 Lam KS. 2006. Discovery of novel metabolites from marine actinomycetes, Curr. Opin. Microbiol., 9:245-251.
  • Referans11 Metsä-Ketelä M, Salo V, Halo L, Hautala A, Hakala J, Mäntsälä P and Ylihonko K. 1999. An efficient approach for screening minimal PKS genes from Streptomyces, FEMS Microbiol. Lett., 180:1-6.
  • Referans12 Ndonde MJM and Semu E. 2000. Preliminary characterization of some Streptomyces species from four Tanzanian soils and their antimicrobial potential against selected plant and animal pathogenic bacteria, World J. Microbiol. Biotechnol., 16:595-599.
  • Referans13 Osbourn A. 2010. Secondary metabolic gene clusters: Evolutionary toolkits for chemical innovation, Trends Genet., 26:449-457.
  • Referans14 Oskay M, Tamer AU and Azeri C. 2004. Antibacterial activity of some Actinomycetes isolated from farming soils of Turkey, Afr. J. Biotechnol., 3:441-446.
  • Referans15 Özcan K. 2017. Trabzon (Karadeniz) Deniz Sedimentlerinden Elde Edilen Denizel Aktinomisetlerin Sekonder Metabolit Biyosentez Genlerinin Taranması, Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 5(5):502-506.
  • Referans16 Pascual J, González I, Estévez M, Benito P, Trujillo ME, et al. 2016. Description of Kibdelosporangium banguiense sp. nov., a novel actinomycete isolated from soil of the forest of Pama, on the plateau of Bangui, Central African Republic. Antonie van Leeuwenhoek, 109:685-695.
  • Referans17 Sacramento DR, Coelho RRR, Wigg MD, Linhares LFTL, Santos MGM and Semedo LTAS. 2004. Antimicrobial and antiviral activities of an actinomycetes (Streptomycin sp.) isolated from a Brazilian tropical forest soil, World. J. Microbiol. Biotechnol., 20:225-229.
  • Referans18 Shen B. 2003. Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms, Curr. Opin. Chem. Biol., 7:285-295.
  • Referans19 Takizawa M, Colwel RR and Hill RT. 1993. Isolation and diversity of actinomycetes in the Chesapeake Bay, Appl. Environ. Microbiol., 59:997-1002.
  • Referans20 Terkina IA, Drukker VV, Parfenova VV and Kostornova TY. 2002. The biodiversity of actinomycetes in Lake Baikal, Microbiology, 71:346-349.
  • Referans21 Wang Y, Zhang ZS, Ruan JS, Wang YM and Ali SM. 1999. Investigation of actinomycete diversity in the tropical rainforests of Singapore, J. Ind. Microbiol., 23:178-187.
  • Referans22 Weber T and Marahiel MA. 2001. Exploring the domain structure of modular nonribosomal peptite synthetases, Structure, 9:3-9.
  • Referans23 Ventosa A, Mellado E, Sanchez-Porro C and Marquez MC. 2008. Halophilic and halotolerant microorganism from soils, In: Dion, P, Nautiyal, C.S (eds) Microbiology of extreme soils. Springer-Verlag, Berlin, Heidelberg, pp. 87-115.
  • Referans24 Von Dohren H, Dieckmann R and Pavela-Vrancic M. 1999. The nonribosomal code, Chemistry and Biology, 6:273-279.
  • Referans25 Zhao J, Shao Y, Zhao Z, Liu F, Zhou H and Li Z. 2011. Diversity of Fungi and Actinomycetes in Soil of Enclosed and Grazing Wetland on Inner Mongolian Plateau, Advanced Materials Research Vols. 356-360, pp.2703-2706.
  • Referans26 Zocher R and Keller U. 1997. Thiol template peptite synthesis systems in bacteria and fungi, Advances in Microbial Physiology, 38:85-131.
There are 26 citations in total.

Details

Primary Language Turkish
Journal Section Research Articles
Authors

Demet Tatar 0000-0002-9317-3263

Aysel Veyisoğlu 0000-0002-1406-5513

Project Number ODMYO19003.18.001
Publication Date April 23, 2021
Submission Date April 8, 2020
Published in Issue Year 2021 Volume: 8 Issue: 2

Cite

APA Tatar, D., & Veyisoğlu, A. (2021). Çorum Çevresindeki Yayla Topraklarından İzole Edilen Actinobacteria Üyelerinin Biyosentetik Genlerinin Taranması. Turkish Journal of Agricultural and Natural Sciences, 8(2), 280-285. https://doi.org/10.30910/turkjans.715700