Çorum Çevresindeki Yayla Topraklarından İzole Edilen Actinobacteria Üyelerinin Biyosentetik Genlerinin Taranması
Year 2021,
Volume: 8 Issue: 2, 280 - 285, 23.04.2021
Demet Tatar
,
Aysel Veyisoğlu
Abstract
Bu çalışmada, Çorum (Kargı ve Osmancık) çevresindeki yaylalardan izole edilen aktinomiset izolatlarının poliketit sentaz ve ribozomal olmayan peptit sentetaz biyosentetik sistemlerinin varlığı moleküler tekniklerle araştırılmıştır. Toplamda 15 tane Actinobacteria üyesinin sekonder metabolit biyosentetik genlerinin (PKS I-II/NRPS) varlığı PCR temelli incelenmiştir. Yapılan çalışmanın sonuçlarına göre, 15 tane aktinomiset izolatının 7 tanesi PKS-I, 11 tanesi PKS-II ve 14 tanesinin NRPS gen bölgesine sahip olduğu bulunmuştur. Sonuçlar değerlendirildiğinde izolatların nonribozomal peptid sentetaz (NRPS) gen kümelerini tip I-II poliketit sentazlar (PKS-I-II) gen kümelerinden daha fazla içerdiği görülmüştür. Ayrıca 5 izolatın üç gen kümesini bir arada bulundurduğu tespit edilmiştir. Sonuç olarak yaylalardan izole edilen aktinomisetlerin yüksek sekonder metabolit üretme kapasitesine sahip olduğu görülmüştür.
Supporting Institution
Hitit Üniversitesi Bilimsel Araştırma Projeleri Koordinasyon Birimi tarafından desteklenmiştir.
Project Number
ODMYO19003.18.001
Thanks
Çalışmaya olan katkılarından dolayı Ondokuz Mayıs Üniversitesi Moleküler Biyoloji ve Genetik Bölüm Başkanı Prof. Dr. Nevzat ŞAHİN’e şükranlarımı sunuyorum.
References
- Referans1
Ayuso-Sacido A and Genilloud O. 2005. New PCR Primers for the Screening of NRPS and PKS-I Systems in Actinomycetes: Detection and Distribution of These Biosynthetic Gene Sequences in Major Taxonomic Groups, Microbial Ecology., 49:10-24.
- Referans2
Cai Y, Xue Q, Chen Z and Zhang R. 2009. Study on Cellulose-decomposed Actinomycetes in Soil in the Eastern of the Qinghai Plateau, Modern Applied Science, 3(2):83.
- Referans3
Colquhoun JA, Heald CS, Li L, Tamaoka J and others. 1998. Taxonomy and biotransformation activities of some deep sea actinomycetes, Extremophiles, 2:269-277.
- Referans4
Gonzalez I, Ayuso-Sacido A, Anderson A and Genilloud O. 2005. Actinomycetes isolated from lichens: Evaluation of their diversity and detection of biosynthetic gene sequences, FEMS Microbiology Ecology, 54:401-415.
- Referans5
Goodfellow M, Stainsby FM, Davenport R, Chun J and Curtis TP. 1998. Activated sludge foaming: the true extent of actinomycetes diversity, Water Sci. Technol., 37:511-519.
- Referans6
Hertweck C. 2009. The Biosynthetic Logic of Polyketide Diversity, Angew. Chem. Int. Ed., 48:4688-4716.
- Referans7
Isik K, Gencbay T, Ozdamir-Kocak F and Cil E. 2014. Molecular identification of different actinomycetes isolated from East Black Sea region plateau soil by 16S rDNA gene sequencing, Afr. J. Microbiol. Res., 8(9):878-887.
- Referans8
Kuster E. 1968. The actinomycetes. In: Soil Biology, eds. Burges (A.) & Raw (F.), Academic Press, London.
- Referans9
Kroken S, Glass NL, Taylor JW, Yoder OC and Turgeon BG. 2003. Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes, Proceedings of the National Academy of Sciences of the United States of America, 100:15670-15675.
- Referans10
Lam KS. 2006. Discovery of novel metabolites from marine actinomycetes, Curr. Opin. Microbiol., 9:245-251.
- Referans11
Metsä-Ketelä M, Salo V, Halo L, Hautala A, Hakala J, Mäntsälä P and Ylihonko K. 1999. An efficient approach for screening minimal PKS genes from Streptomyces, FEMS Microbiol. Lett., 180:1-6.
- Referans12
Ndonde MJM and Semu E. 2000. Preliminary characterization of some Streptomyces species from four Tanzanian soils and their antimicrobial potential against selected plant and animal pathogenic bacteria, World J. Microbiol. Biotechnol., 16:595-599.
- Referans13
Osbourn A. 2010. Secondary metabolic gene clusters: Evolutionary toolkits for chemical innovation, Trends Genet., 26:449-457.
- Referans14
Oskay M, Tamer AU and Azeri C. 2004. Antibacterial activity of some Actinomycetes isolated from farming soils of Turkey, Afr. J. Biotechnol., 3:441-446.
- Referans15
Özcan K. 2017. Trabzon (Karadeniz) Deniz Sedimentlerinden Elde Edilen Denizel Aktinomisetlerin Sekonder Metabolit Biyosentez Genlerinin Taranması, Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 5(5):502-506.
- Referans16
Pascual J, González I, Estévez M, Benito P, Trujillo ME, et al. 2016. Description of Kibdelosporangium banguiense sp. nov., a novel actinomycete isolated from soil of the forest of Pama, on the plateau of Bangui, Central African Republic. Antonie van Leeuwenhoek, 109:685-695.
- Referans17
Sacramento DR, Coelho RRR, Wigg MD, Linhares LFTL, Santos MGM and Semedo LTAS. 2004. Antimicrobial and antiviral activities of an actinomycetes (Streptomycin sp.) isolated from a Brazilian tropical forest soil, World. J. Microbiol. Biotechnol., 20:225-229.
- Referans18
Shen B. 2003. Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms, Curr. Opin. Chem. Biol., 7:285-295.
- Referans19
Takizawa M, Colwel RR and Hill RT. 1993. Isolation and diversity of actinomycetes in the Chesapeake Bay, Appl. Environ. Microbiol., 59:997-1002.
- Referans20
Terkina IA, Drukker VV, Parfenova VV and Kostornova TY. 2002. The biodiversity of actinomycetes in Lake Baikal, Microbiology, 71:346-349.
- Referans21
Wang Y, Zhang ZS, Ruan JS, Wang YM and Ali SM. 1999. Investigation of actinomycete diversity in the tropical rainforests of Singapore, J. Ind. Microbiol., 23:178-187.
- Referans22
Weber T and Marahiel MA. 2001. Exploring the domain structure of modular nonribosomal peptite synthetases, Structure, 9:3-9.
- Referans23
Ventosa A, Mellado E, Sanchez-Porro C and Marquez MC. 2008. Halophilic and halotolerant microorganism from soils, In: Dion, P, Nautiyal, C.S (eds) Microbiology of extreme soils. Springer-Verlag, Berlin, Heidelberg, pp. 87-115.
- Referans24
Von Dohren H, Dieckmann R and Pavela-Vrancic M. 1999. The nonribosomal code, Chemistry and Biology, 6:273-279.
- Referans25
Zhao J, Shao Y, Zhao Z, Liu F, Zhou H and Li Z. 2011. Diversity of Fungi and Actinomycetes in Soil of Enclosed and Grazing Wetland on Inner Mongolian Plateau, Advanced Materials Research Vols. 356-360, pp.2703-2706.
- Referans26
Zocher R and Keller U. 1997. Thiol template peptite synthesis systems in bacteria and fungi, Advances in Microbial Physiology, 38:85-131.
Year 2021,
Volume: 8 Issue: 2, 280 - 285, 23.04.2021
Demet Tatar
,
Aysel Veyisoğlu
Project Number
ODMYO19003.18.001
References
- Referans1
Ayuso-Sacido A and Genilloud O. 2005. New PCR Primers for the Screening of NRPS and PKS-I Systems in Actinomycetes: Detection and Distribution of These Biosynthetic Gene Sequences in Major Taxonomic Groups, Microbial Ecology., 49:10-24.
- Referans2
Cai Y, Xue Q, Chen Z and Zhang R. 2009. Study on Cellulose-decomposed Actinomycetes in Soil in the Eastern of the Qinghai Plateau, Modern Applied Science, 3(2):83.
- Referans3
Colquhoun JA, Heald CS, Li L, Tamaoka J and others. 1998. Taxonomy and biotransformation activities of some deep sea actinomycetes, Extremophiles, 2:269-277.
- Referans4
Gonzalez I, Ayuso-Sacido A, Anderson A and Genilloud O. 2005. Actinomycetes isolated from lichens: Evaluation of their diversity and detection of biosynthetic gene sequences, FEMS Microbiology Ecology, 54:401-415.
- Referans5
Goodfellow M, Stainsby FM, Davenport R, Chun J and Curtis TP. 1998. Activated sludge foaming: the true extent of actinomycetes diversity, Water Sci. Technol., 37:511-519.
- Referans6
Hertweck C. 2009. The Biosynthetic Logic of Polyketide Diversity, Angew. Chem. Int. Ed., 48:4688-4716.
- Referans7
Isik K, Gencbay T, Ozdamir-Kocak F and Cil E. 2014. Molecular identification of different actinomycetes isolated from East Black Sea region plateau soil by 16S rDNA gene sequencing, Afr. J. Microbiol. Res., 8(9):878-887.
- Referans8
Kuster E. 1968. The actinomycetes. In: Soil Biology, eds. Burges (A.) & Raw (F.), Academic Press, London.
- Referans9
Kroken S, Glass NL, Taylor JW, Yoder OC and Turgeon BG. 2003. Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes, Proceedings of the National Academy of Sciences of the United States of America, 100:15670-15675.
- Referans10
Lam KS. 2006. Discovery of novel metabolites from marine actinomycetes, Curr. Opin. Microbiol., 9:245-251.
- Referans11
Metsä-Ketelä M, Salo V, Halo L, Hautala A, Hakala J, Mäntsälä P and Ylihonko K. 1999. An efficient approach for screening minimal PKS genes from Streptomyces, FEMS Microbiol. Lett., 180:1-6.
- Referans12
Ndonde MJM and Semu E. 2000. Preliminary characterization of some Streptomyces species from four Tanzanian soils and their antimicrobial potential against selected plant and animal pathogenic bacteria, World J. Microbiol. Biotechnol., 16:595-599.
- Referans13
Osbourn A. 2010. Secondary metabolic gene clusters: Evolutionary toolkits for chemical innovation, Trends Genet., 26:449-457.
- Referans14
Oskay M, Tamer AU and Azeri C. 2004. Antibacterial activity of some Actinomycetes isolated from farming soils of Turkey, Afr. J. Biotechnol., 3:441-446.
- Referans15
Özcan K. 2017. Trabzon (Karadeniz) Deniz Sedimentlerinden Elde Edilen Denizel Aktinomisetlerin Sekonder Metabolit Biyosentez Genlerinin Taranması, Türk Tarım – Gıda Bilim ve Teknoloji Dergisi, 5(5):502-506.
- Referans16
Pascual J, González I, Estévez M, Benito P, Trujillo ME, et al. 2016. Description of Kibdelosporangium banguiense sp. nov., a novel actinomycete isolated from soil of the forest of Pama, on the plateau of Bangui, Central African Republic. Antonie van Leeuwenhoek, 109:685-695.
- Referans17
Sacramento DR, Coelho RRR, Wigg MD, Linhares LFTL, Santos MGM and Semedo LTAS. 2004. Antimicrobial and antiviral activities of an actinomycetes (Streptomycin sp.) isolated from a Brazilian tropical forest soil, World. J. Microbiol. Biotechnol., 20:225-229.
- Referans18
Shen B. 2003. Polyketide biosynthesis beyond the type I, II and III polyketide synthase paradigms, Curr. Opin. Chem. Biol., 7:285-295.
- Referans19
Takizawa M, Colwel RR and Hill RT. 1993. Isolation and diversity of actinomycetes in the Chesapeake Bay, Appl. Environ. Microbiol., 59:997-1002.
- Referans20
Terkina IA, Drukker VV, Parfenova VV and Kostornova TY. 2002. The biodiversity of actinomycetes in Lake Baikal, Microbiology, 71:346-349.
- Referans21
Wang Y, Zhang ZS, Ruan JS, Wang YM and Ali SM. 1999. Investigation of actinomycete diversity in the tropical rainforests of Singapore, J. Ind. Microbiol., 23:178-187.
- Referans22
Weber T and Marahiel MA. 2001. Exploring the domain structure of modular nonribosomal peptite synthetases, Structure, 9:3-9.
- Referans23
Ventosa A, Mellado E, Sanchez-Porro C and Marquez MC. 2008. Halophilic and halotolerant microorganism from soils, In: Dion, P, Nautiyal, C.S (eds) Microbiology of extreme soils. Springer-Verlag, Berlin, Heidelberg, pp. 87-115.
- Referans24
Von Dohren H, Dieckmann R and Pavela-Vrancic M. 1999. The nonribosomal code, Chemistry and Biology, 6:273-279.
- Referans25
Zhao J, Shao Y, Zhao Z, Liu F, Zhou H and Li Z. 2011. Diversity of Fungi and Actinomycetes in Soil of Enclosed and Grazing Wetland on Inner Mongolian Plateau, Advanced Materials Research Vols. 356-360, pp.2703-2706.
- Referans26
Zocher R and Keller U. 1997. Thiol template peptite synthesis systems in bacteria and fungi, Advances in Microbial Physiology, 38:85-131.