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Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species

Year 2023, Volume: 10 Issue: 3, 339 - 351, 27.11.2023
https://doi.org/10.19159/tutad.1339143

Abstract

The hindered growth characteristics evident in almond [Prunus dulcis (Mill.) D.A. Webb] plants exert a significant influence on the yield. Nevertheless, the precise underlying mechanisms are still largely uncharted. In analogous botanical instances, pivotal regulators of growth and development have been recognized as gibberellin (GA) and brassinosteroid (BR) genes. Notwithstanding, these genetic determinants functions remain insufficiently probed within the context of almonds, a crop species of pronounced economic significance. Within the confines of this inquiry, we endeavoured to scrutinize the repercussions of GA and BR metabolic genes on the stunted growth phenomenon within almonds. This objective was pursued by exploring the impact of the administration of exogenous gibberellin 3 (GA3) on the stunted growth characteristics, accompanied by an exhaustive analysis of the transcriptional profiles pertaining to GA and BR genes in the aftermath of said treatment. The assessment of the expression levels of prospective genes associated with the stunted growth attributes was executed across both diminutive and semi-diminutive almond cultivars. The findings derived from our investigations have unequivocally unveiled heightened expression patterns of these select genes within the stem and root tissues of both modest and semi-modest almond cultivars. Such observations cogently suggest the plausible cardinal roles undertaken by these specific genetic elements in the orchestration of the stunted growth trait conspicuous in almond plants. Thus, it can contribute to regulating plant height, increasing productivity and reducing branch breakage.

References

  • Anonymous, 2023. Crops and Livestock Products. Food and Agriculture Organization of the United Nations, (https://www.fao.org/faostat/en/#data/QCL), (Accessed: 08.08.2023).
  • Challis, R. J., Hepworth, J., Mouchel, C., Waites, R., Leyser, O., 2013. A role for more axillary growth1 (MAX1) in evolutionary diversity in strigolactone signaling upstream of MAX2. Plant Physiology, 161(4): 1885-902.
  • Chen, J., Jianghui, X., Duan, Y., Hu, H., Hu, Y., Li, W., 2016. Genome-wide identification and expression profiling reveal tissue-specific expression and differentially-regulated genes involved in gibberellin metabolism between Williams banana and its dwarf mutant. BMC Plant Biology, 16(1): 123-141.
  • Chen, Y., Hou, M., Liu, L., Wu, S., Shen, Y., Ishiyama, K., Kobayashi, M., McCarty, D. R., Tan, B. C., 2014. The maize DWARF1 encodes a gibberellin 3-oxidase and is dual localized to the nucleus and cytosol. Plant Physiology, 166(4): 2028-2039.
  • Dai, X., Zhao, P.X., 2011. psRNATarget: A plant small RNA target analysis server. Nucleic Acids Research, 39(2): 155-159.
  • Feng, S., Martinez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias-Pedraz, J.M., Kircher, S., 2008. Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature, 451(7177): 475-479.
  • Ferrero-Serrano, A., Cantos, C., Assmann, S.M., 2019. The role of dwarfing traits in historical and modern agriculture with a focus on rice. Cold Spring Harbor Perspectives in Biology, 11(11): 1-30.
  • Fujiyama, K., Hino, T., Kanadani, M., Watanabe, B., Lee, H.J., Mizutani, M., Nagano, S., 2019. Structural insights into a key step of brassinosteroid biosynthesis and its inhibition. Nature Plants, 5(6): 589-594.
  • Gallego-Bartolomé, J., Minguet, E.G., Grau-Enguix, F., Abbas, M., Locascio, A., Thomas, S.G., Alabadí, D., Blázquez, M.A., 2012. Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis. Proceedings of the National Academy of Sciences, 109(33): 13446-13451.
  • Guan, Y., Xue, Xue, J., Yang, Y., Wang, R., Wang, S., Zhang, X., 2019. Effect of exogenous GA3 on flowering quality, endogenous hormones, and hormone-and flowering-associated gene expression in forcing-cultured tree peony (Paeonia suffruticosa). Journal of Integrative Agriculture, 18(6): 1295-1311.
  • Guo, S., Zhang, X., Bai, Q., Zhao, W., Fang, Y., Zhou, S., Zhao, B., He, L., Chen, J., 2020. Cloning and functional analysis of dwarf gene mini plant 1 (MNP1) in Medicago truncatula. International Journal of Molecular Sciences, 21(14): 4968-4984.
  • He, H., Liang, G., Lu, S., Wang, P., Liu, T., Ma, Z., Zuo, C., Sun, X., Chen, B., Mao, J., 2019. Genome-wide identification and expression analysis of GA2ox, GA3ox, and GA20ox are related to gibberellin oxidase genes in grape (Vitis vinifera L.). Genes, 10(9): 680-701.
  • Hedden, P., 2003. The genes of the Green Revolution. TRENDS in Genetics, 19(1): 5-9.
  • Hu, Z., Damaris, R.N., Yang, P., 2020. Mechanism of GA-mediated leaf sheath growth in rice: a proteomic approach. Plant Growth Regulation, 91(1): 1-14.
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K., 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6): 1547-1549.
  • Lo, S., Yang, S., Chen, K., Hsing, Y., Zeevaart, J.A.D., Chen, L., Yu, S., 2008. A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice. The Plant Cell, 20(10): 2603-2618.
  • Ma, Y., Xue, H., Zhang, L., Zhang, F., Ou, C., Wang, F., Zhang, Z., 2016. Involvement of auxin and brassinosteroid in dwarfism of autotetraploid apple (Malus×domestica). Scientific Reports, 24(6): 26719-26733.
  • Nomura, T., Kushiro, T., Yokota, T., Kamiya, Y., Bishop, G.J., Yamaguchi, S., 2005. The last reaction producing brassinolide is catalyzed by cytochrome P-450s, CYP85A3 in tomato and CYP85A2 in Arabidopsis. Journal of Biological Chemistry, 280(18): 17873-17879.
  • Shahnejat-Bushehri, S., Tarkowska, D., Sakuraba, Y., Balazadeh, S., 2016. Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nature Plants, 2(3): 16013-16022.
  • Shen, Y., Zhuang, W., Tu, X., Gao, Z., Xiong, A., Yu, X., Li, X., Li, F., Qu, S., 2019. Transcriptomic analysis of interstock-induced dwarfism in Sweet Persimmon (Diospyros kaki Thunb.). Horticulture Research, 6(1): 51-68.
  • Spielmeyer, W., Ellis, M.H., Chandler, P.M., 2002. Semidwarf (sd-1),“green revolution” rice, contains a defective gibberellin 20-oxidase gene. Proceedings of the National Academy of Sciences, 99(13): 9043-9048.
  • Stefanowicz, K., Lannoo, N., Van Damme, E.J.M., 2015. Plant F-box proteins-judges between life and death. Critical Reviews in Plant Sciences, 34(6): 523-552.
  • Wang, H., Li, W., Qin, Y., Pan, Y., Wang, X., Weng, Y., Chen, P., Li, Y., 2017. The cytochrome P450 gene CsCYP85A1 is a putative candidate for super compact-1 (scp-1) plant architecture mutation in cucumber (Cucumis sativus L.). Frontiers in Plant Science, 8(1): 266-279.
  • Wang, Y., Sun, S., Zhu, W., Jia, K., Yang, H., Wang, X., 2013. Strigolactone/MAX2-induced degradation of brassinosteroid transcriptional effector BES1 regulates shoot branching. Developmental Cell, 27(6): 681-688.
  • Xiao, Z., Fu, R., Li, J., Fan, Z., Yin, H., 2016. Overexpression of the gibberellin 2-oxidase gene from Camellia lipoensis induces dwarfism and smaller flowers in Nicotiana tabacum. Plant Molecular Biology Reporter, 34(1): 182-191.
  • Xing, M., Su, H., Liu, X., Yang, L., Zhang, Y., Wang, Y., Fang, Z., Lv, H., 2020. Morphological, transcriptomics and phytohormone analysis shed light on the development of a novel dwarf mutant of cabbage (Brassica oleracea). Plant Science, 290(1): 110283-110295.
  • Zhang, C., Sun, J., Jia, Y., Wang, J., Xu, Z., Du X., 2011. Morphological characters, inheritance and response to exogenous hormones of a cotton super‐dwarf mutant of Gossypium hirsutum. Plant Breeding, 130(1): 67-72.
  • Zhao, L., Fang, J., Xing, J., Liu, W., Peng, P., Long, H., Zhao, J., Zhang, W., Li, X., 2017. Identification and functional analysis of two cotton Orthologs of MAX2 which control shoot lateral branching. Plant Molecular Biology Reporter, 35(1): 480-490.

Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species

Year 2023, Volume: 10 Issue: 3, 339 - 351, 27.11.2023
https://doi.org/10.19159/tutad.1339143

Abstract

The hindered growth characteristics evident in almond [Prunus dulcis (Mill.) D.A. Webb] plants exert a significant influence on the yield. Nevertheless, the precise underlying mechanisms are still largely uncharted. In analogous botanical instances, pivotal regulators of growth and development have been recognized as gibberellin (GA) and brassinosteroid (BR) genes. Notwithstanding, these genetic determinants functions remain insufficiently probed within the context of almonds, a crop species of pronounced economic significance. Within the confines of this inquiry, we endeavoured to scrutinize the repercussions of GA and BR metabolic genes on the stunted growth phenomenon within almonds. This objective was pursued by exploring the impact of the administration of exogenous gibberellin 3 (GA3) on the stunted growth characteristics, accompanied by an exhaustive analysis of the transcriptional profiles pertaining to GA and BR genes in the aftermath of said treatment. The assessment of the expression levels of prospective genes associated with the stunted growth attributes was executed across both diminutive and semi-diminutive almond cultivars. The findings derived from our investigations have unequivocally unveiled heightened expression patterns of these select genes within the stem and root tissues of both modest and semi-modest almond cultivars. Such observations cogently suggest the plausible cardinal roles undertaken by these specific genetic elements in the orchestration of the stunted growth trait conspicuous in almond plants. Thus, it can contribute to regulating plant height, increasing productivity and reducing branch breakage.

Thanks

Ankara Üniversitesi Biyoteknoloji Enstitüsü'nden Prof. Dr. Ali Ergül ve öğrencileri Dr.Canan Yüksel Özmen, Dr. Serdar Altıntaş, Dr. Muhammad Mujtaba ve Dr. Umut Kibar'a katkılarından dolayı teşekkür ederim.

References

  • Anonymous, 2023. Crops and Livestock Products. Food and Agriculture Organization of the United Nations, (https://www.fao.org/faostat/en/#data/QCL), (Accessed: 08.08.2023).
  • Challis, R. J., Hepworth, J., Mouchel, C., Waites, R., Leyser, O., 2013. A role for more axillary growth1 (MAX1) in evolutionary diversity in strigolactone signaling upstream of MAX2. Plant Physiology, 161(4): 1885-902.
  • Chen, J., Jianghui, X., Duan, Y., Hu, H., Hu, Y., Li, W., 2016. Genome-wide identification and expression profiling reveal tissue-specific expression and differentially-regulated genes involved in gibberellin metabolism between Williams banana and its dwarf mutant. BMC Plant Biology, 16(1): 123-141.
  • Chen, Y., Hou, M., Liu, L., Wu, S., Shen, Y., Ishiyama, K., Kobayashi, M., McCarty, D. R., Tan, B. C., 2014. The maize DWARF1 encodes a gibberellin 3-oxidase and is dual localized to the nucleus and cytosol. Plant Physiology, 166(4): 2028-2039.
  • Dai, X., Zhao, P.X., 2011. psRNATarget: A plant small RNA target analysis server. Nucleic Acids Research, 39(2): 155-159.
  • Feng, S., Martinez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias-Pedraz, J.M., Kircher, S., 2008. Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature, 451(7177): 475-479.
  • Ferrero-Serrano, A., Cantos, C., Assmann, S.M., 2019. The role of dwarfing traits in historical and modern agriculture with a focus on rice. Cold Spring Harbor Perspectives in Biology, 11(11): 1-30.
  • Fujiyama, K., Hino, T., Kanadani, M., Watanabe, B., Lee, H.J., Mizutani, M., Nagano, S., 2019. Structural insights into a key step of brassinosteroid biosynthesis and its inhibition. Nature Plants, 5(6): 589-594.
  • Gallego-Bartolomé, J., Minguet, E.G., Grau-Enguix, F., Abbas, M., Locascio, A., Thomas, S.G., Alabadí, D., Blázquez, M.A., 2012. Molecular mechanism for the interaction between gibberellin and brassinosteroid signaling pathways in Arabidopsis. Proceedings of the National Academy of Sciences, 109(33): 13446-13451.
  • Guan, Y., Xue, Xue, J., Yang, Y., Wang, R., Wang, S., Zhang, X., 2019. Effect of exogenous GA3 on flowering quality, endogenous hormones, and hormone-and flowering-associated gene expression in forcing-cultured tree peony (Paeonia suffruticosa). Journal of Integrative Agriculture, 18(6): 1295-1311.
  • Guo, S., Zhang, X., Bai, Q., Zhao, W., Fang, Y., Zhou, S., Zhao, B., He, L., Chen, J., 2020. Cloning and functional analysis of dwarf gene mini plant 1 (MNP1) in Medicago truncatula. International Journal of Molecular Sciences, 21(14): 4968-4984.
  • He, H., Liang, G., Lu, S., Wang, P., Liu, T., Ma, Z., Zuo, C., Sun, X., Chen, B., Mao, J., 2019. Genome-wide identification and expression analysis of GA2ox, GA3ox, and GA20ox are related to gibberellin oxidase genes in grape (Vitis vinifera L.). Genes, 10(9): 680-701.
  • Hedden, P., 2003. The genes of the Green Revolution. TRENDS in Genetics, 19(1): 5-9.
  • Hu, Z., Damaris, R.N., Yang, P., 2020. Mechanism of GA-mediated leaf sheath growth in rice: a proteomic approach. Plant Growth Regulation, 91(1): 1-14.
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., Tamura, K., 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6): 1547-1549.
  • Lo, S., Yang, S., Chen, K., Hsing, Y., Zeevaart, J.A.D., Chen, L., Yu, S., 2008. A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice. The Plant Cell, 20(10): 2603-2618.
  • Ma, Y., Xue, H., Zhang, L., Zhang, F., Ou, C., Wang, F., Zhang, Z., 2016. Involvement of auxin and brassinosteroid in dwarfism of autotetraploid apple (Malus×domestica). Scientific Reports, 24(6): 26719-26733.
  • Nomura, T., Kushiro, T., Yokota, T., Kamiya, Y., Bishop, G.J., Yamaguchi, S., 2005. The last reaction producing brassinolide is catalyzed by cytochrome P-450s, CYP85A3 in tomato and CYP85A2 in Arabidopsis. Journal of Biological Chemistry, 280(18): 17873-17879.
  • Shahnejat-Bushehri, S., Tarkowska, D., Sakuraba, Y., Balazadeh, S., 2016. Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nature Plants, 2(3): 16013-16022.
  • Shen, Y., Zhuang, W., Tu, X., Gao, Z., Xiong, A., Yu, X., Li, X., Li, F., Qu, S., 2019. Transcriptomic analysis of interstock-induced dwarfism in Sweet Persimmon (Diospyros kaki Thunb.). Horticulture Research, 6(1): 51-68.
  • Spielmeyer, W., Ellis, M.H., Chandler, P.M., 2002. Semidwarf (sd-1),“green revolution” rice, contains a defective gibberellin 20-oxidase gene. Proceedings of the National Academy of Sciences, 99(13): 9043-9048.
  • Stefanowicz, K., Lannoo, N., Van Damme, E.J.M., 2015. Plant F-box proteins-judges between life and death. Critical Reviews in Plant Sciences, 34(6): 523-552.
  • Wang, H., Li, W., Qin, Y., Pan, Y., Wang, X., Weng, Y., Chen, P., Li, Y., 2017. The cytochrome P450 gene CsCYP85A1 is a putative candidate for super compact-1 (scp-1) plant architecture mutation in cucumber (Cucumis sativus L.). Frontiers in Plant Science, 8(1): 266-279.
  • Wang, Y., Sun, S., Zhu, W., Jia, K., Yang, H., Wang, X., 2013. Strigolactone/MAX2-induced degradation of brassinosteroid transcriptional effector BES1 regulates shoot branching. Developmental Cell, 27(6): 681-688.
  • Xiao, Z., Fu, R., Li, J., Fan, Z., Yin, H., 2016. Overexpression of the gibberellin 2-oxidase gene from Camellia lipoensis induces dwarfism and smaller flowers in Nicotiana tabacum. Plant Molecular Biology Reporter, 34(1): 182-191.
  • Xing, M., Su, H., Liu, X., Yang, L., Zhang, Y., Wang, Y., Fang, Z., Lv, H., 2020. Morphological, transcriptomics and phytohormone analysis shed light on the development of a novel dwarf mutant of cabbage (Brassica oleracea). Plant Science, 290(1): 110283-110295.
  • Zhang, C., Sun, J., Jia, Y., Wang, J., Xu, Z., Du X., 2011. Morphological characters, inheritance and response to exogenous hormones of a cotton super‐dwarf mutant of Gossypium hirsutum. Plant Breeding, 130(1): 67-72.
  • Zhao, L., Fang, J., Xing, J., Liu, W., Peng, P., Long, H., Zhao, J., Zhang, W., Li, X., 2017. Identification and functional analysis of two cotton Orthologs of MAX2 which control shoot lateral branching. Plant Molecular Biology Reporter, 35(1): 480-490.
There are 28 citations in total.

Details

Primary Language English
Subjects Plant Biotechnology
Journal Section Research Article
Authors

Sümeyye Altunok 0000-0002-9004-0617

Publication Date November 27, 2023
Published in Issue Year 2023 Volume: 10 Issue: 3

Cite

APA Altunok, S. (2023). Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species. Türkiye Tarımsal Araştırmalar Dergisi, 10(3), 339-351. https://doi.org/10.19159/tutad.1339143
AMA Altunok S. Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species. TÜTAD. November 2023;10(3):339-351. doi:10.19159/tutad.1339143
Chicago Altunok, Sümeyye. “Decoding Dwarfism: Gene Expression in Different Almond [Prunus Dulcis (Mill.) D.A. Webb] Species”. Türkiye Tarımsal Araştırmalar Dergisi 10, no. 3 (November 2023): 339-51. https://doi.org/10.19159/tutad.1339143.
EndNote Altunok S (November 1, 2023) Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species. Türkiye Tarımsal Araştırmalar Dergisi 10 3 339–351.
IEEE S. Altunok, “Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species”, TÜTAD, vol. 10, no. 3, pp. 339–351, 2023, doi: 10.19159/tutad.1339143.
ISNAD Altunok, Sümeyye. “Decoding Dwarfism: Gene Expression in Different Almond [Prunus Dulcis (Mill.) D.A. Webb] Species”. Türkiye Tarımsal Araştırmalar Dergisi 10/3 (November 2023), 339-351. https://doi.org/10.19159/tutad.1339143.
JAMA Altunok S. Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species. TÜTAD. 2023;10:339–351.
MLA Altunok, Sümeyye. “Decoding Dwarfism: Gene Expression in Different Almond [Prunus Dulcis (Mill.) D.A. Webb] Species”. Türkiye Tarımsal Araştırmalar Dergisi, vol. 10, no. 3, 2023, pp. 339-51, doi:10.19159/tutad.1339143.
Vancouver Altunok S. Decoding Dwarfism: Gene Expression in Different Almond [Prunus dulcis (Mill.) D.A. Webb] Species. TÜTAD. 2023;10(3):339-51.

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