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Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar

Year 2010, Volume: 24 Issue: 1, 131 - 144, 01.04.2010

Abstract

References

  • Akin, D.E. and Rigsby, L.L. 1987. Mixed fungal populations and lignocellulose tissue degradation in the bovine rumen. Appl. Environ. Microbiol. 53: 1987–1995.
  • Barr, D.J.S., 1988. How modern systematic relates to the rumen fungi. BioSystems 21: 351- 356.
  • Barr, D.J.S., Kudo, H., Jakober, K.D. and Cheng, K.-J., 1989. Morphology and development of rumen fungi: Neocallimastix sp. Piromyces communis and Orpinomyces bovis gen. nov., sp. nov. Can. J. Bot. 67: 2815-2824.
  • Barr, D.J.S., Yanke, L.J., Bae, H.D., McAllister, T.A. and Cheng, K.-J., 1995. Contributions on the morphology and taxonomy of some rumen fungi from Canada. Mycotaxon LIV: 203-214.
  • Bauchop, T. and Mounfort, D.O., 1981. Cellulose fermentation by a rumen anaerobic fungus in both the absence and presence of rumen methanogens. Appl. Environ. Microbiol. 42: 1103-1110.
  • Bauchop, T., 1983. The gut anaerobic fungi: Colonizers of dietry fibre. In Fibre in Human and Animal Nutrition. (edt. G. Wallace and L. Bell). Royal Society of New Zealand, Wellington, p. 143-148.
  • Bell, A.A. and Wheeler, M.H., 1986. Biosynthesis and functions of fungal melanins. Ann. Rev. Phytopathol. 24: 411-451.
  • Bernalier, A., Fonty, G. and Gouet, Ph., 1991. Cellulase degradation by two rumen anaerobic fungi in monoculture or in coculture with rumen bacteria. Anim. Feed Sci. Technol. 32: 131-136.
  • Bernalier, A., Fonty, G. and Gouet, Ph. 1992. Degradation and fermentation of cellulose by the rumen anaerobic fungi in axenic cultures or in association with cellulolytic bacteria. Curr. Microbiol. 25: 143-149.
  • Bernalier, A., Fonty, G., Bonnemoy, F. and Gouet, Ph., 1993. Inhibition of cellulolytic activity of Neocallimastix frontalis by Ruminococcus flavefaciens. J. Gen. Microbiol. 139: 873-880.
  • Billon-Grand, G., Fio, J.B., Breton, A., Bruyere, A. and Oulhaj, Z., 1991. DNA of some anaerobic fungi: G+C content determination. FEMS Microbiol. Lett. 82: 267-270.
  • Braune, R., 1913. Untersuchungen uber die in Wiederkauermayen vorkommenden Protozoen. Arch. Protistenk. 32: 111-170.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000a. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000b. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brownlee, A.G., 1989. Remarkably AT-rich genomic DNA from the anaerobic fungus Neocallimastix. Nucleic Acids Res. 4: 1327-1335.
  • Chen, Y.C., Hseu, R.S. and Chien, C.Y., 2002. Piromyces polycephalus (Neocallimastigaceae), a new rumen fungus. Nowa Hedwigia 75: 409-414.
  • Chen, Y.C, Tsai, S.D. and Cheng, H.L., 2007. Caecomyces sympodialis sp. nov., a new rumen fungus isolated from Bos indicus. Mycologia, 99(1): 125-130.
  • Çömlekçioğlu, U., Akyol, İ., Kar, B., Özköse, E. ve Ekinci, M.S., 2008. Anaerobik rumen funguslarının izolasyonu, tanımlanması ve kültür koleksiyonunun oluşturulması. Hayvansal Üretim, 49(2): 29-35.
  • Çömlekçioğlu, 2009. Rumen funguslarının izolasyonu ve bu funguslara ait enzim genleri üzerine moleküler çalışmalar. Kahramanmaraş Sütçü İmam Üniversitesi, Doktora Tezi.
  • Davies, D.R., Theodorou, M.K., Lawrence, M.I. and Trinci, A.P.J., 1993a. Distribution of anaerobic fungi in the digestive tract of cattle and their survival in faeces. J. Gen. Microbiol. 139: 1395-1400.
  • Davies, D.R., Theodorou, M.K., Brooks, A.E. and Trinci, A.P.J., 1993b. Influence of drying on the survival of anaerobic fungi in rumen digesta and faeces of cattle. FEMS Microbiol. Lett. 106: 59-64.
  • Dehority, B.A. and Tirabasso, P.A., 2000. Antibiosis between ruminal bacteria and ruminal fungi. Appl. Environ. Microbiol., 66(7): 2921–2927
  • Denman, S.E. and McSweeney, C.S, 2006. Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol. 58: 572–582.
  • Dore, J. and Stahl, D. A., 1991. Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparison. Can. J. Bot. 69: 1964-1971.
  • Flint, H.J., 1994. Molecular genetics of obligate anaerobes from the rumen. FEMS Microbiol. Lett. 121, 259-268.
  • Foster, J.W. 1949. Chemical activities of the fungi. Academic Press, New York.
  • Gordon, G.L.R. and Phillips, M.W., 1998. The role of anaerobic gut fungi in ruminants. Nutr. Res. Rev. 11: 133-168.
  • Heath, I.B., Bauchop, T. and Skipp, R.A., 1983. Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure. Can. J. Bot. 61: 295-307.
  • Heath, I.B., Kaminskyj, S.G.W. and Bauchop, T., 1986. Basal body loss during fungal zoospore encystment: evidence against centriole autonomy. J. Cell. Sci. 83: 135-140.
  • Heath, I.B., 1988. Recommendation for future taxonomic studies of gut fungi. Biosystems. 21: 417-418.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1988. Penetrating structures of anaerobic rumen fungi in cattle and swamp buffalo. J. Gen. Microbiol. 134: 177-182.
  • Ho, Y.W., and Bauchop, T., 1991. Morphology of three polycentric rumen fungi and a description of the procedure for the induction of zoosporogenesis and release of zoospores in culture. J. Gen. Microbiol. 137: 213-217.
  • Ho, Y. W., Khoo, I. Y. S., Tan, S. G., Abdullah, N., Jalaludin, S. and Kudo, H., 1994a. Isoenzyme analysis of anaerobic rumen fungi and their relationship to aerobic chytrids. Microbiology 140: 1495-1504.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1994b. Orpinomyces intercalaris, a new species of polycentric anaerobic rumen fungus from cattle. Mycotaxon. 50: 139-150.
  • Ho, Y.W. and Barr, D.J.S., 1995. Classification of anaerobic fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycol. 87: 655-677.
  • Ho, Y.W., Wong, M.V.L., Abdullah, N., Kudo, H. and Jalaludin, S., 1996. Fermentation activities of some new species of anaerobic rumen fungi from Malaysia. J. Gen. Microbiol. 42: 51-59.
  • Itabashi, H. 2004. Recent topics in rumen microbiology with particular reference to animal prodution in Japan. Microbes Environment, 19(4): 270-275.
  • James, T.Y., Porter, D., Leander, C. A., Vilgalys, R. and Longcore, J.E., 2000. Molecular phylogenetics of the chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78: 336-350.
  • James, T.Y., Letcher, P.M., Longcore, J.E., Mozley-Standridge, S.E., Porter, D., Powell, M.J., Griffith, G.W. and Vilgalys, R., 2006. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and a proposal for a new phylum (Blastocladiomycota). Mycologia 98: 860–871.
  • Joblin, K. N., 1990. Bacterial and protozoal interactions with ruminal fungi. Microbial and plant opputinities to improve lignocellulose utilization by ruminants. Ed. D.E. Akin, L.G. Ljungdahl, J.R. Wilson, P.J. Harris. Elsevier Science Publishing Co: 311-324.
  • Joblin, K.N. and Naylor, G.E., 1994. Effects of Butyrivibrio fibrisolvens on gut anaerobic fungi. Proc. Nutr. Soc. 3: 171.
  • Kamra, D.N. 2005. Rumen microbial ecosystem. Current Science, 89 (1): 124-135.
  • Kopecny, J., Hodrova, B. and Stewart, C.S., 1996. The isolation and characterization of a rumen chitinolytic bacterium. Lett. Appl. Microbiol. 23: 195-198.
  • Koppova, I., Novotna, Z., Strosova, L. and Fliegerova, K., 2008. Analysis of fatty acid composition of anaerobic rumen fungi. Folia Microbiol. 53: 217-220.
  • Lee, S.S., Ha, J.K. and Cheng, K.J., 2001. The effects of sequential inoculation of mixed rumen protozoa on the degradation of orchard grass cell walls by anaerobic fungus Anaeromyces mucronatus 543. Can. J.Microbiol. 47: 754-760.
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Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar

Year 2010, Volume: 24 Issue: 1, 131 - 144, 01.04.2010

Abstract

Rumen bakteri, arkea, protozoa, fungus ve bakteriyofajlardan oluşan kompleks bir mikrobiyal ekosisteme sahiptir. Rumende besin maddelerinin fermantasyonunu gerçekleştiren rumen mikroorganizmaları içerisinde anaerobik funguslar 6 cins altında 20 tür ile temsil edilmektedir. Anaerobik funguslar, monosentrik ve polisentrik olmak üzere iki farklı üreme şekline sahip olup vejetatif tallusları küresel veya filamentli rizoid içerebilir. Sahip oldukları anaerobik yaşam tarzı ve iki aşamalı yaşam döngüsü nedeniyle sınıflandırmadaki yeri günümüze kadar tartışılmış ve son yapılan çalışmalar neticesinde içerisinde sadece anaerobik rumen funguslarının bulunduğu Neocallimastigomycota adında yeni bir filum oluşturulmuştur. Zorunlu anaerob olan bu fungusların herbivorlar arasında nasıl transfer oldukları henüz tam olarak aydınlatılamamıştır. Bu çalışmada anaerobik rumen funguslarının taksonomisi, yaşam döngüsü, herbivorlar arasındaki transferleri ile diğer rumen mikroorganizmalarıyla etkileşimi üzerine olan genel bir bakış sunulmuştur

References

  • Akin, D.E. and Rigsby, L.L. 1987. Mixed fungal populations and lignocellulose tissue degradation in the bovine rumen. Appl. Environ. Microbiol. 53: 1987–1995.
  • Barr, D.J.S., 1988. How modern systematic relates to the rumen fungi. BioSystems 21: 351- 356.
  • Barr, D.J.S., Kudo, H., Jakober, K.D. and Cheng, K.-J., 1989. Morphology and development of rumen fungi: Neocallimastix sp. Piromyces communis and Orpinomyces bovis gen. nov., sp. nov. Can. J. Bot. 67: 2815-2824.
  • Barr, D.J.S., Yanke, L.J., Bae, H.D., McAllister, T.A. and Cheng, K.-J., 1995. Contributions on the morphology and taxonomy of some rumen fungi from Canada. Mycotaxon LIV: 203-214.
  • Bauchop, T. and Mounfort, D.O., 1981. Cellulose fermentation by a rumen anaerobic fungus in both the absence and presence of rumen methanogens. Appl. Environ. Microbiol. 42: 1103-1110.
  • Bauchop, T., 1983. The gut anaerobic fungi: Colonizers of dietry fibre. In Fibre in Human and Animal Nutrition. (edt. G. Wallace and L. Bell). Royal Society of New Zealand, Wellington, p. 143-148.
  • Bell, A.A. and Wheeler, M.H., 1986. Biosynthesis and functions of fungal melanins. Ann. Rev. Phytopathol. 24: 411-451.
  • Bernalier, A., Fonty, G. and Gouet, Ph., 1991. Cellulase degradation by two rumen anaerobic fungi in monoculture or in coculture with rumen bacteria. Anim. Feed Sci. Technol. 32: 131-136.
  • Bernalier, A., Fonty, G. and Gouet, Ph. 1992. Degradation and fermentation of cellulose by the rumen anaerobic fungi in axenic cultures or in association with cellulolytic bacteria. Curr. Microbiol. 25: 143-149.
  • Bernalier, A., Fonty, G., Bonnemoy, F. and Gouet, Ph., 1993. Inhibition of cellulolytic activity of Neocallimastix frontalis by Ruminococcus flavefaciens. J. Gen. Microbiol. 139: 873-880.
  • Billon-Grand, G., Fio, J.B., Breton, A., Bruyere, A. and Oulhaj, Z., 1991. DNA of some anaerobic fungi: G+C content determination. FEMS Microbiol. Lett. 82: 267-270.
  • Braune, R., 1913. Untersuchungen uber die in Wiederkauermayen vorkommenden Protozoen. Arch. Protistenk. 32: 111-170.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000a. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brookman, J.L., Ozkose, E., Rogers, S., Trinci, A.P.J. and Theodorou, M.K., 2000b. Identification of spores in the polycentric anaerobic gut fungi which enhance their ability to survive. FEMS Microbiol. Ecol. 31: 261-267.
  • Brownlee, A.G., 1989. Remarkably AT-rich genomic DNA from the anaerobic fungus Neocallimastix. Nucleic Acids Res. 4: 1327-1335.
  • Chen, Y.C., Hseu, R.S. and Chien, C.Y., 2002. Piromyces polycephalus (Neocallimastigaceae), a new rumen fungus. Nowa Hedwigia 75: 409-414.
  • Chen, Y.C, Tsai, S.D. and Cheng, H.L., 2007. Caecomyces sympodialis sp. nov., a new rumen fungus isolated from Bos indicus. Mycologia, 99(1): 125-130.
  • Çömlekçioğlu, U., Akyol, İ., Kar, B., Özköse, E. ve Ekinci, M.S., 2008. Anaerobik rumen funguslarının izolasyonu, tanımlanması ve kültür koleksiyonunun oluşturulması. Hayvansal Üretim, 49(2): 29-35.
  • Çömlekçioğlu, 2009. Rumen funguslarının izolasyonu ve bu funguslara ait enzim genleri üzerine moleküler çalışmalar. Kahramanmaraş Sütçü İmam Üniversitesi, Doktora Tezi.
  • Davies, D.R., Theodorou, M.K., Lawrence, M.I. and Trinci, A.P.J., 1993a. Distribution of anaerobic fungi in the digestive tract of cattle and their survival in faeces. J. Gen. Microbiol. 139: 1395-1400.
  • Davies, D.R., Theodorou, M.K., Brooks, A.E. and Trinci, A.P.J., 1993b. Influence of drying on the survival of anaerobic fungi in rumen digesta and faeces of cattle. FEMS Microbiol. Lett. 106: 59-64.
  • Dehority, B.A. and Tirabasso, P.A., 2000. Antibiosis between ruminal bacteria and ruminal fungi. Appl. Environ. Microbiol., 66(7): 2921–2927
  • Denman, S.E. and McSweeney, C.S, 2006. Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen. FEMS Microbiol Ecol. 58: 572–582.
  • Dore, J. and Stahl, D. A., 1991. Phylogeny of anaerobic rumen Chytridiomycetes inferred from small subunit ribosomal RNA sequence comparison. Can. J. Bot. 69: 1964-1971.
  • Flint, H.J., 1994. Molecular genetics of obligate anaerobes from the rumen. FEMS Microbiol. Lett. 121, 259-268.
  • Foster, J.W. 1949. Chemical activities of the fungi. Academic Press, New York.
  • Gordon, G.L.R. and Phillips, M.W., 1998. The role of anaerobic gut fungi in ruminants. Nutr. Res. Rev. 11: 133-168.
  • Heath, I.B., Bauchop, T. and Skipp, R.A., 1983. Assignment of the rumen anaerobe Neocallimastix frontalis to the Spizellomycetales (Chytridiomycetes) on the basis of its polyflagellate zoospore ultrastructure. Can. J. Bot. 61: 295-307.
  • Heath, I.B., Kaminskyj, S.G.W. and Bauchop, T., 1986. Basal body loss during fungal zoospore encystment: evidence against centriole autonomy. J. Cell. Sci. 83: 135-140.
  • Heath, I.B., 1988. Recommendation for future taxonomic studies of gut fungi. Biosystems. 21: 417-418.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1988. Penetrating structures of anaerobic rumen fungi in cattle and swamp buffalo. J. Gen. Microbiol. 134: 177-182.
  • Ho, Y.W., and Bauchop, T., 1991. Morphology of three polycentric rumen fungi and a description of the procedure for the induction of zoosporogenesis and release of zoospores in culture. J. Gen. Microbiol. 137: 213-217.
  • Ho, Y. W., Khoo, I. Y. S., Tan, S. G., Abdullah, N., Jalaludin, S. and Kudo, H., 1994a. Isoenzyme analysis of anaerobic rumen fungi and their relationship to aerobic chytrids. Microbiology 140: 1495-1504.
  • Ho, Y.W., Abdullah, N. and Jalaludin, S., 1994b. Orpinomyces intercalaris, a new species of polycentric anaerobic rumen fungus from cattle. Mycotaxon. 50: 139-150.
  • Ho, Y.W. and Barr, D.J.S., 1995. Classification of anaerobic fungi from herbivores with emphasis on rumen fungi from Malaysia. Mycol. 87: 655-677.
  • Ho, Y.W., Wong, M.V.L., Abdullah, N., Kudo, H. and Jalaludin, S., 1996. Fermentation activities of some new species of anaerobic rumen fungi from Malaysia. J. Gen. Microbiol. 42: 51-59.
  • Itabashi, H. 2004. Recent topics in rumen microbiology with particular reference to animal prodution in Japan. Microbes Environment, 19(4): 270-275.
  • James, T.Y., Porter, D., Leander, C. A., Vilgalys, R. and Longcore, J.E., 2000. Molecular phylogenetics of the chytridiomycota supports the utility of ultrastructural data in chytrid systematics. Can. J. Bot. 78: 336-350.
  • James, T.Y., Letcher, P.M., Longcore, J.E., Mozley-Standridge, S.E., Porter, D., Powell, M.J., Griffith, G.W. and Vilgalys, R., 2006. A molecular phylogeny of the flagellated fungi (Chytridiomycota) and a proposal for a new phylum (Blastocladiomycota). Mycologia 98: 860–871.
  • Joblin, K. N., 1990. Bacterial and protozoal interactions with ruminal fungi. Microbial and plant opputinities to improve lignocellulose utilization by ruminants. Ed. D.E. Akin, L.G. Ljungdahl, J.R. Wilson, P.J. Harris. Elsevier Science Publishing Co: 311-324.
  • Joblin, K.N. and Naylor, G.E., 1994. Effects of Butyrivibrio fibrisolvens on gut anaerobic fungi. Proc. Nutr. Soc. 3: 171.
  • Kamra, D.N. 2005. Rumen microbial ecosystem. Current Science, 89 (1): 124-135.
  • Kopecny, J., Hodrova, B. and Stewart, C.S., 1996. The isolation and characterization of a rumen chitinolytic bacterium. Lett. Appl. Microbiol. 23: 195-198.
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There are 78 citations in total.

Details

Primary Language Turkish
Journal Section Research Articles
Authors

Uğur Çömlekçioğlu This is me

Emin Özköse This is me

İsmail Akyol This is me

Mehmet Sait Ekinci This is me

Publication Date April 1, 2010
Published in Issue Year 2010 Volume: 24 Issue: 1

Cite

APA Çömlekçioğlu, U., Özköse, E., Akyol, İ., Ekinci, M. S. (2010). Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar. Uludağ Üniversitesi Ziraat Fakültesi Dergisi, 24(1), 131-144.
AMA Çömlekçioğlu U, Özköse E, Akyol İ, Ekinci MS. Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar. Uludag Üniv. Ziraat Fak. Derg. April 2010;24(1):131-144.
Chicago Çömlekçioğlu, Uğur, Emin Özköse, İsmail Akyol, and Mehmet Sait Ekinci. “Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar”. Uludağ Üniversitesi Ziraat Fakültesi Dergisi 24, no. 1 (April 2010): 131-44.
EndNote Çömlekçioğlu U, Özköse E, Akyol İ, Ekinci MS (April 1, 2010) Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar. Uludağ Üniversitesi Ziraat Fakültesi Dergisi 24 1 131–144.
IEEE U. Çömlekçioğlu, E. Özköse, İ. Akyol, and M. S. Ekinci, “Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar”, Uludag Üniv. Ziraat Fak. Derg., vol. 24, no. 1, pp. 131–144, 2010.
ISNAD Çömlekçioğlu, Uğur et al. “Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar”. Uludağ Üniversitesi Ziraat Fakültesi Dergisi 24/1 (April 2010), 131-144.
JAMA Çömlekçioğlu U, Özköse E, Akyol İ, Ekinci MS. Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar. Uludag Üniv. Ziraat Fak. Derg. 2010;24:131–144.
MLA Çömlekçioğlu, Uğur et al. “Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar”. Uludağ Üniversitesi Ziraat Fakültesi Dergisi, vol. 24, no. 1, 2010, pp. 131-44.
Vancouver Çömlekçioğlu U, Özköse E, Akyol İ, Ekinci MS. Rumen Mikrobiyal Ekosistemi İçerisinde Anaerobik Funguslar. Uludag Üniv. Ziraat Fak. Derg. 2010;24(1):131-44.