Araştırma Makalesi
BibTex RIS Kaynak Göster
Yıl 2021, Cilt: 11 Sayı: 1, 191 - 204, 30.06.2021
https://doi.org/10.37094/adyujsci.934336

Öz

Kaynakça

  • [1] Başaran, E., Aras, S., Cansaran-Duman, D., Genomik, proteomik, metabolomik kavramlarına genel bakış ve uygulama alanları, Türk Hijyen ve Deneysel Biyoloji Dergisi, 67, 85-96, 2010.
  • [2] Vu, L.D., Gevaert, K., De Smet, I., Protein language: post-translational modifications talking to each other, Trends in Plant Science, 23, 1068-1080, 2018.
  • [3] Oliveira-Ferrer, L., Legler, K., Milde-Langosch, K., Role of protein glycosylation in cancer metastasis, Seminars in Cancer Biology, 44, 141-152, 2017.
  • [4] Mathew, M.P., Donaldson, J.G., Glycosylation and glycan interactions can serve as extracellular machinery facilitating clathrin‐independent endocytosis, Traffic, 20, 295-300, 2019.
  • [5] Özaydin, E., Yalçin, F., Gündüz, M., Köse, G., Konjenital glikozilasyon bozukluğu tip II, Türkiye Çocuk Hastalıkları Dergisi, 6, 47-53, 2012.
  • [6] Omana, D.A., Wang, J., Wu, J., Ovomucin - a glycoprotein with promising potential. Trends Food Sci Technol., 21, 455-463, 2010.
  • [7] Kobayashi, K., Hattori, M., Hara-Kudo, Y., Okubo, T., Yamamoto, S., Takita, T., Sugita-Konishi, Y., Glycopeptide derived from hen egg ovomucin has the ability to bind enterohemorrhagic Escherichia coli O157:H7, J Agric Food Chemistry, 52, 5740-5746, 2004.
  • [8] Sharif, M.K., Saleem, M., Javed, K., Chapter 15 - Food materials science in egg powder industry, Role of Materials Science in Food Bioengineering, Elsevier press, 505-537, 2018.
  • [9] Kovacs-Nolan, J., Phillips, M., Mine, Y., Advances in the value of eggs and egg components for human health, Journal of Agricultural and Food Chemistry, 53, 8421-8431, 2005.
  • [10] Smith, D.F., Cummings, R.D., Song, X., History and future of shotgun glycomics, Biochemical Society Transactions, 1, 1-11, 2019.
  • [11] Dong, X., Huang, Y., Cho, B.G., et al., Advances in mass spectrometry‐based glycomics, Electrophoresıs, 39, 3063-3081, 2018.
  • [12] Keser, T., Pavić, T., Lauc, G., Gornik, O., Comparison of 2-Aminobenzamide, Procainamide and RapiFluor-MS as derivatizing agents for High-Throughput HILIC-UPLC-FLR-MS N-Glycan analysis, Frontiers in Chemistry, 6, 324, 2018.
  • [13] Kayili, H.M., Avci, İ., Salih, B., A new Titania Glyco-Purification Tip for the fast enrichment and efficient analysis of glycopeptides and glycans by MALDI-TOF-MS, Journal of Pharmaceutical and Biomedical Analysis, 174, 191–197, 2019.
  • [14] Kayili, H.M., Barlas, N., Atakay, M., Salih, B., Fast purification of glycans and glycopeptides using silk-packed micropipette tip for matrix-assisted laser desorption/ionization-mass spectrometry and high-performance liquid chromatography-fluorescence detection analysis, Microchemical Journal, 139, 492–499, 2018.
  • [15] Kayili, H.M., Ertürk, A.S., Elmacı, G., Salih, B., Poly(Amidoamine) dendrimer-coated magnetic nanoparticles for the fast purification and selective enrichment of glycopeptides and glycans, Journal of Separation Science, 42, 3209-3216, 2019.
  • [16] Kozak, R.P., Tortosa, C.B., Fernandes, D.L., Spencer, D.I.R., Comparison of procainamide and 2-aminobenzamide labeling for profiling and identification of glycans by liquid chromatography with fluorescence detection coupled to electrospray ionization–mass spectrometry, Analytical Biochemistry, 486, 38-40, 2015.
  • [17] Kayili, H.M., Identification of bisecting N-glycans in tandem mass spectra using a procainamide labeling approach for in-depth N-glycan profiling of biological samples, International Journal of Mass Spectrometry, 457, 116412, 2020.
  • [18] Nwosu, C., Yau, H.K., Becht, S., Assignment of core versus Antenna Fucosylation types in protein N-Glycosylation via procainamide labeling and tandem mass spectrometry, Analytical Chemistry, 87, 5905-5913, 2015.

In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS

Yıl 2021, Cilt: 11 Sayı: 1, 191 - 204, 30.06.2021
https://doi.org/10.37094/adyujsci.934336

Öz

Protein glycosylation is an essential post-translational modification and modulates critical cellular events. It is known that N-glycosylated proteins from egg white and yolk are played crucial roles in various cellular pathways. Characterization of N-glycan structures of glycoproteomes is required to understand these functions. Therefore, this study is aimed to characterize the N-glycan profiles of ostrich egg white and yolk glycoproteomes. In the study, N-glycans were released from ostrich egg white and yolk glycoproteomes by an enzymatical process and labeled with a procainamide tag. Samples were analyzed by HPLC-HILIC-FLD-MS/MS (high-performance hydrophilic interaction liquid chromatography with fluorescence and tandem mass spectrometric detection). The number of detected N-glycans obtained from ostrich egg white and yolk glycoproteomes was found to be 39 and 36, respectively. It was determined that N-glycans of ostrich egg white glycoproteome were highly galactosylated (96.64%). In addition, bisecting N-glycans were abundant in ostrich egg white glycoproteome (91.72%) compared to ostrich egg yolk glycoproteome (6.74%). The abundance of high-mannose N-glycans was dramatically higher in the ostrich egg yolk glycoproteome (55.84%) than the ostrich egg yolk glycoproteome (2.67%). The fucosylation ratio of N-glycans belonging to ostrich egg white and yolk glycoproteomes was detected to be 4.52% and 0.95%, respectively. The obtained data showed that N-glycan profiles of ostrich egg white and yolk glycoproteomes differed significantly.

Kaynakça

  • [1] Başaran, E., Aras, S., Cansaran-Duman, D., Genomik, proteomik, metabolomik kavramlarına genel bakış ve uygulama alanları, Türk Hijyen ve Deneysel Biyoloji Dergisi, 67, 85-96, 2010.
  • [2] Vu, L.D., Gevaert, K., De Smet, I., Protein language: post-translational modifications talking to each other, Trends in Plant Science, 23, 1068-1080, 2018.
  • [3] Oliveira-Ferrer, L., Legler, K., Milde-Langosch, K., Role of protein glycosylation in cancer metastasis, Seminars in Cancer Biology, 44, 141-152, 2017.
  • [4] Mathew, M.P., Donaldson, J.G., Glycosylation and glycan interactions can serve as extracellular machinery facilitating clathrin‐independent endocytosis, Traffic, 20, 295-300, 2019.
  • [5] Özaydin, E., Yalçin, F., Gündüz, M., Köse, G., Konjenital glikozilasyon bozukluğu tip II, Türkiye Çocuk Hastalıkları Dergisi, 6, 47-53, 2012.
  • [6] Omana, D.A., Wang, J., Wu, J., Ovomucin - a glycoprotein with promising potential. Trends Food Sci Technol., 21, 455-463, 2010.
  • [7] Kobayashi, K., Hattori, M., Hara-Kudo, Y., Okubo, T., Yamamoto, S., Takita, T., Sugita-Konishi, Y., Glycopeptide derived from hen egg ovomucin has the ability to bind enterohemorrhagic Escherichia coli O157:H7, J Agric Food Chemistry, 52, 5740-5746, 2004.
  • [8] Sharif, M.K., Saleem, M., Javed, K., Chapter 15 - Food materials science in egg powder industry, Role of Materials Science in Food Bioengineering, Elsevier press, 505-537, 2018.
  • [9] Kovacs-Nolan, J., Phillips, M., Mine, Y., Advances in the value of eggs and egg components for human health, Journal of Agricultural and Food Chemistry, 53, 8421-8431, 2005.
  • [10] Smith, D.F., Cummings, R.D., Song, X., History and future of shotgun glycomics, Biochemical Society Transactions, 1, 1-11, 2019.
  • [11] Dong, X., Huang, Y., Cho, B.G., et al., Advances in mass spectrometry‐based glycomics, Electrophoresıs, 39, 3063-3081, 2018.
  • [12] Keser, T., Pavić, T., Lauc, G., Gornik, O., Comparison of 2-Aminobenzamide, Procainamide and RapiFluor-MS as derivatizing agents for High-Throughput HILIC-UPLC-FLR-MS N-Glycan analysis, Frontiers in Chemistry, 6, 324, 2018.
  • [13] Kayili, H.M., Avci, İ., Salih, B., A new Titania Glyco-Purification Tip for the fast enrichment and efficient analysis of glycopeptides and glycans by MALDI-TOF-MS, Journal of Pharmaceutical and Biomedical Analysis, 174, 191–197, 2019.
  • [14] Kayili, H.M., Barlas, N., Atakay, M., Salih, B., Fast purification of glycans and glycopeptides using silk-packed micropipette tip for matrix-assisted laser desorption/ionization-mass spectrometry and high-performance liquid chromatography-fluorescence detection analysis, Microchemical Journal, 139, 492–499, 2018.
  • [15] Kayili, H.M., Ertürk, A.S., Elmacı, G., Salih, B., Poly(Amidoamine) dendrimer-coated magnetic nanoparticles for the fast purification and selective enrichment of glycopeptides and glycans, Journal of Separation Science, 42, 3209-3216, 2019.
  • [16] Kozak, R.P., Tortosa, C.B., Fernandes, D.L., Spencer, D.I.R., Comparison of procainamide and 2-aminobenzamide labeling for profiling and identification of glycans by liquid chromatography with fluorescence detection coupled to electrospray ionization–mass spectrometry, Analytical Biochemistry, 486, 38-40, 2015.
  • [17] Kayili, H.M., Identification of bisecting N-glycans in tandem mass spectra using a procainamide labeling approach for in-depth N-glycan profiling of biological samples, International Journal of Mass Spectrometry, 457, 116412, 2020.
  • [18] Nwosu, C., Yau, H.K., Becht, S., Assignment of core versus Antenna Fucosylation types in protein N-Glycosylation via procainamide labeling and tandem mass spectrometry, Analytical Chemistry, 87, 5905-5913, 2015.
Toplam 18 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Analitik Kimya
Bölüm Kimya
Yazarlar

Hacı Mehmet Kayılı 0000-0002-6740-0645

Yayımlanma Tarihi 30 Haziran 2021
Gönderilme Tarihi 7 Mayıs 2021
Kabul Tarihi 31 Mayıs 2021
Yayımlandığı Sayı Yıl 2021 Cilt: 11 Sayı: 1

Kaynak Göster

APA Kayılı, H. M. (2021). In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS. Adıyaman University Journal of Science, 11(1), 191-204. https://doi.org/10.37094/adyujsci.934336
AMA Kayılı HM. In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS. ADYU J SCI. Haziran 2021;11(1):191-204. doi:10.37094/adyujsci.934336
Chicago Kayılı, Hacı Mehmet. “In-Depth Profiling of N-Glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS”. Adıyaman University Journal of Science 11, sy. 1 (Haziran 2021): 191-204. https://doi.org/10.37094/adyujsci.934336.
EndNote Kayılı HM (01 Haziran 2021) In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS. Adıyaman University Journal of Science 11 1 191–204.
IEEE H. M. Kayılı, “In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS”, ADYU J SCI, c. 11, sy. 1, ss. 191–204, 2021, doi: 10.37094/adyujsci.934336.
ISNAD Kayılı, Hacı Mehmet. “In-Depth Profiling of N-Glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS”. Adıyaman University Journal of Science 11/1 (Haziran 2021), 191-204. https://doi.org/10.37094/adyujsci.934336.
JAMA Kayılı HM. In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS. ADYU J SCI. 2021;11:191–204.
MLA Kayılı, Hacı Mehmet. “In-Depth Profiling of N-Glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS”. Adıyaman University Journal of Science, c. 11, sy. 1, 2021, ss. 191-04, doi:10.37094/adyujsci.934336.
Vancouver Kayılı HM. In-depth Profiling of N-glycans Isolated from Ostrich Egg White and Yolk Glycoproteomes by HPLC-HILIC-FLD-MS/MS. ADYU J SCI. 2021;11(1):191-204.

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