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Cs-C60Cl6 Molekülünün Moleküler Geometri ve Elektronik Özelliklerine Uygulanan Metot ve Baz Seti, DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++ G(d,p) ve HSEH1PBE/6-31G(d,p), Yöntemlerinin Karşılaştırmalı İncelemesi

Yıl 2021, Cilt: 11 Sayı: 2, 456 - 473, 31.12.2021
https://doi.org/10.37094/adyujsci.938050

Öz

Bu çalışmada, DFT kuantum kimyasal hesaplama yönteminin, B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) ve HSEH1PBE/6-31G(d,p) olmak üzere dört farklı düzeyinde, halojenleşmiş bir fulleren olan Cs-C60Cl6 molekülünün moleküler yapısına uygulanmıştır. Ek olarak, saf C60 fullerenin molekül yapısı, tamamlayıcı ve destekleyici bir çalışma olarak sunulmuştur. Ayrıca, simüle edilmiş FT-IR, Raman ve UV-Vis (sikloheksan çözücüsünde) spektrumları, HOMO-LUMO analizi, moleküler elektrostatik potansiyel (MEP) haritası, döteryumlanmış kloroform çözücü ile hem gaz fazında hem de tetraklorometanda 13C NMR kimyasal kayma değerleri ve Cs-C60Cl6 molekülünün belirtilen düzeylerdeki termodinamik özellikleri rapor edilmiştir. Fuleren, çeşitli tıbbi alanlarda kullanılabilecek birçok fiziksel ve elektrokimyasal özelliğe sahiptir. Özellikle, HIV proteazlarının hidrofobik boşluğunun içine sığabilir ve substratlara enzimin katalitik bölgesine girmesini kısıtlayabilir. Bu nedenle, bir antioksidan ve radikal temizleyici olarak kullanılabilir.

Kaynakça

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A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule

Yıl 2021, Cilt: 11 Sayı: 2, 456 - 473, 31.12.2021
https://doi.org/10.37094/adyujsci.938050

Öz

In this study, four different levels, B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) of the DFT quantum chemical calculation method have been applied to the molecular structure of the Cs-C60Cl6 molecule as a halogenated fullerene. Additionally, the molecular structure of pure C60 fullerene was presented as complementary and supportive work. Furthermore, the simulated FT-IR, Raman and UV-Vis (in cyclohexane solvent) spectra, HOMO-LUMO analysis, the molecular electrostatic potential (MEP) map, the 13C NMR chemical shift values in both gas phase and tetrachloromethane with deuterated chloroform solvent and the thermodynamics properties at the mentioned levels of the Cs-C60Cl6 molecule were reported. Fullerene has many physical and electrochemical properties, which can be utilized in several medical fields. Especially, it can fit inside the hydrophobic cavity of HIV proteases, restricting the get into substrates to the catalytic site of the enzyme. Hence, it is utilizable as an antioxidant and radical scavenger.

Kaynakça

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  • [22] Yan, Q.B., Zheng, Q.R., Su, G., Theoretical study on the structures, properties and spectroscopies of fullerene derivatives C66X4 (X= H, F, Cl), Carbon, 45(9), 1821-1827, 2007.
  • [23] Troyanov, S.I., Boltalina, O.V., Kouvytchko, I.V., Troshin, P.A., Kemnitz, E., Hitchcock, P.B., Taylor, R., Molecular and crystal structure of the adducts of C60F18 with aromatic hydrocarbons, Fullerenes, Nanotubes And Carbon Nanostructures, 10(3), 243-259, 2002.
  • [24] Adjizian, J.J., Vlandas, A., Rio, J., Charlier, J.C., Ewels, C.P., Ab initio infrared vibrational modes for neutral and charged small fullerenes (C20, C24, C26, C28, C30 and C60), Philosophical Transactions Of The Royal Society A: Mathematical, Physical And Engineering Sciences, 374(2076), 20150323, 2016.
  • [25] Yang, T., Zhao, X., Nagase, S., Di-lanthanide encapsulated into large fullerene C100: a DFT survey, Physical Chemistry Chemical Physics, 13(11), 5034-5037, 2011.
  • [26] Carter, E.A., Rossky, P.J., Computational and theoretical chemistry, Accounts of Chemical Research, 39(2), 71-72, 2006.
  • [27] Bauernschmitt, R., Ahlrichs, R., Hennrich, F.H., Kappes, M.M., Experiment versus time dependent density functional theory prediction of fullerene electronic absorption, Journal of the American Chemical Society, 120(20), 5052-5059, 1998.
  • [28] Schettino, V., Pagliai, M., Cardini, G., The infrared and Raman spectra of fullerene C70. DFT calculations and correlation with C60, The Journal of Physical Chemistry A, 106(9), 1815-1823, 2002.
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  • [40] Heyd, J., Scuseria, G.E., Ernzerhof, M., Hybrid functionals based on a screened Coulomb potential, The Journal of Chemical Physics, 118(18), 8207-8215, 2003.
  • [41] Zhao, Y., Truhlar, D.G., Comparative DFT study of van der Waals complexes: Rare-Gas Dimers, Alkaline-Earth Dimers, Zinc Dimer, And Zinc-Rare-Gas Dimers, The Journal of Physical Chemistry A, 110(15), 5121-5129, 2006.
  • [42] Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., ... Fox, D.J., Gaussian 09, Gaussian, Inc., Wallingford CT, 2009.
  • [43] Dennington, R., Keith, T., Millam, J., GaussView Version 5. Semichem Inc., Shawnee Mission, Kans, 2009.
  • [44] Foresman, J.B., Frisch., E., Exploring chemistry with electronic structure methods, Gaussian Inc., Pittsburgh, Pa., USA, 1993.
  • [45] London, F. Théorie quantique des courants interatomiques dans les combinaisons aromatiques, Journal de Physique et le Radium, 8(10), 397-409, 1937.
  • [46] Bauernschmitt, R., Ahlrichs, R., Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory, Chemical Physics Letters, 256(4-5), 454-464, 1996.
  • [47] Jamorski, C., Casida, M.E., Salahub, D.R., Dynamic polarizabilities and excitation spectra from a molecular implementation of time‐dependent density‐functional response theory: N2 as a case study, The Journal of Chemical Physics, 104(13), 5134-5147, 1996.
  • [48] Birkett, P.R., Hitchcock, P.B., Kroto, H.W., Taylor, R., Walton, D.R., Preparation and characterization of C60Br6 and C60Br8, Nature, 357(6378), 479-481, 1992.
  • [49] Birkett, P.R., Avent, A.G., Darwish, A.D., Kroto, H.W., Taylor, R., Walton, D.R., Holey fullerenes! a bis-lactone derivative of [70 fullerene with an eleven-atom orifice, Journal of the Chemical Society, Chemical Communications, 18, 1869-1870, 1995.
  • [50] Politzer, P., Murray, J.S., Clark, T., Halogen bonding and other σ-hole interactions: a perspective, Physical Chemistry Chemical Physics, 15(27), 11178-11189, 2013.
  • [51] Troyanov, S.I., Troshin, P.A., Boltalina, O.V., Kemnitz, E., Bromination of [60]Fullerene. II. Crystal and molecular structure of [60]Fullerene bromides, C60Br6, C60Br8, and C60Br24, Fullerenes, Nanotubes and Carbon Nanostructures, 11(1), 61-77, 2003.
  • [52] Fedurco, M., Olmstead, M.M., Fawcett, W.R., Single-crystal X-ray structure of C60•6SbPh3. A well-ordered structure of C60 and a new fullerene solvent, Inorganic Chemistry, 34(1), 390-392, 1995.
  • [53] Birkett, P.R., Avent, A.G., Darwish, A.D., Kroto, H.W., Taylor, R., Walton, D.R.M, Preparation and 13C NMR spectroscopic characterisation of C60Cl6, Journal of the Chemical Society, Chemical Communications, 15, 1230-1232, 1993.
  • [54] Kuvychko, I.V., Streletskii, A.V., Shustova, N.B., Seppelt, K., Drewello, T., Popov, A.A., Boltalina, O.V., Soluble Chlorofullerenes C60Cl2,4,6,8,10. Synthesis, purification, compositional analysis, stability, and experimental/theoretical structure elucidation, including the X-ray structure of C1-C60Cl10, Journal of the American Chemical Society, 132(18), 6443-6462, 2010.
  • [55] Süleymanoğlu, N., Ustabaş, R., Alpaslan, Y.B., Eyduran, F., İskeleli, N.O., Experimental and theoretical investigation of the molecular and electronic structure of 3-ethoxy-4-isopropylaminocyclobut-3-ene-1,2-dione, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 96, 35-41, 2012.
  • [56] Popov, A.A., Kareev, I.E., Shustova, N.B., Stukalin, E.B., Lebedkin, S.F., Seppelt, K., Dunsch, L., Electrochemical, spectroscopic, and DFT study of C60(CF3)n frontier orbitals (n= 2− 18): the link between double bonds in pentagons and reduction potentials, Journal of the American Chemical Society, 129(37), 11551-11568, 2007.
  • [57] Pearson, R.G., Absolute electronegativity and hardness correlated with molecular orbital theory, Proceedings of the National Academy of Sciences, 83(22), 8440-8441, 1986.
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  • [59] Fukui, K., Role of frontier orbitals in chemical reactions, Science, 218(4574), 747-754, 1982.
  • [60] Chtita, S., Ghamali, M., Larif, M., Adad, A., Hmammouchi, R., Bouachrine, M., Lakhlifi, T., Prediction of biological activity of imidazo [1,2-a] pyrazine derivatives by combining DFT and QSAR results, International Journal of Innovative Research in Science, Engineering and Technology, 2(11), 7951-7962, 2013.
  • [61] Murray, J.S., Sen K. eds., Molecular electrostatic potentials concepts and applications, Elsevier Science BV, Amsterdam, The Netherlands, 1996.
  • [62] Pîrnău, A., Chiş, V., Oniga, O., Leopold, N., Szabo, L., Baias, M.,nCozar, O., Vibrational and DFT study of 5-(3-pyridyl-methylidene)-thiazolidine-2-thione-4-one, Vibrational spectroscopy, 48(2), 289-296, 2008.
  • [63] Sarıkaya, E.K., Bahçeli, S., Varkal, D., Dereli, Ö., FT-IR, micro-Raman and UV–vis spectroscopic and quantum chemical calculation studies on the 6-chloro-4-hydroxy-3-phenyl pyridazine compound, Journal of Molecular Structure, 1141, 44-52, 2017.
  • [64] Yilmaz, M., Aydin, B., Dogan, O., Dereli, O., Molecular structure and spectral investigations of 3,5-Di-tert-butyl-o-benzoquinone, Journal of Molecular Structure, 1128, 345-354, 2017.
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Toplam 65 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Atomik, Moleküler ve Optik Fizik
Bölüm Fizik
Yazarlar

Ebru Karakaş Sarıkaya 0000-0003-2149-9341

Ömer Dereli 0000-0002-9031-8092

Semiha Bahçeli 0000-0002-5614-325X

Yayımlanma Tarihi 31 Aralık 2021
Gönderilme Tarihi 16 Mayıs 2021
Kabul Tarihi 6 Aralık 2021
Yayımlandığı Sayı Yıl 2021 Cilt: 11 Sayı: 2

Kaynak Göster

APA Karakaş Sarıkaya, E., Dereli, Ö., & Bahçeli, S. (2021). A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule. Adıyaman University Journal of Science, 11(2), 456-473. https://doi.org/10.37094/adyujsci.938050
AMA Karakaş Sarıkaya E, Dereli Ö, Bahçeli S. A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule. ADYU J SCI. Aralık 2021;11(2):456-473. doi:10.37094/adyujsci.938050
Chicago Karakaş Sarıkaya, Ebru, Ömer Dereli, ve Semiha Bahçeli. “A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic Properties of Cs-C60Cl6 Molecule”. Adıyaman University Journal of Science 11, sy. 2 (Aralık 2021): 456-73. https://doi.org/10.37094/adyujsci.938050.
EndNote Karakaş Sarıkaya E, Dereli Ö, Bahçeli S (01 Aralık 2021) A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule. Adıyaman University Journal of Science 11 2 456–473.
IEEE E. Karakaş Sarıkaya, Ö. Dereli, ve S. Bahçeli, “A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule”, ADYU J SCI, c. 11, sy. 2, ss. 456–473, 2021, doi: 10.37094/adyujsci.938050.
ISNAD Karakaş Sarıkaya, Ebru vd. “A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic Properties of Cs-C60Cl6 Molecule”. Adıyaman University Journal of Science 11/2 (Aralık 2021), 456-473. https://doi.org/10.37094/adyujsci.938050.
JAMA Karakaş Sarıkaya E, Dereli Ö, Bahçeli S. A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule. ADYU J SCI. 2021;11:456–473.
MLA Karakaş Sarıkaya, Ebru vd. “A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic Properties of Cs-C60Cl6 Molecule”. Adıyaman University Journal of Science, c. 11, sy. 2, 2021, ss. 456-73, doi:10.37094/adyujsci.938050.
Vancouver Karakaş Sarıkaya E, Dereli Ö, Bahçeli S. A Comparative Study of DFT/B3LYP/6-31G(d,p), RM062X/6-31G(d,p), B3LYP/6-311++G(d,p) and HSEH1PBE/6-31G(d,p) Methods Applied to Molecular Geometry and Electronic properties of Cs-C60Cl6 Molecule. ADYU J SCI. 2021;11(2):456-73.

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