Araştırma Makalesi
BibTex RIS Kaynak Göster

Yıl 2025, Cilt: 1 Sayı: 1, 1 - 10, 26.12.2025
https://izlik.org/JA84WW95NN

Öz

3-(p-klorobenzil)-4-(p-florobenzilidenamino)-4,5-dihidro-1H-1,2,4-
triazol-5-on molekülünün tek kristal X-ışını kırınımı yöntemiyle
aydınlatılan yapısı, tautomerik izomerizm için gerekli olan yapısal
özellikleri açıkça taşımaktadır. Bu çalışmada, bileşiğin iki olası tautomer
formu gaz fazında yoğunluk fonksiyonel teorisi (DFT) kullanılarak,
B3LYP/6-31G(d) düzeyinde optimize edilmiştir. İki yapı arasındaki
potansiyel enerji yüzeyinin ayrıntılı olarak incelenmesi ve geçiş durumunun
tanımlanması amacıyla Intrinsic Reaction Coordinate (IRC)
hesaplamaları gerçekleştirilmiştir. Hesaplamalar sonucunda, enerji
bakımından belirgin farklılıkların bulunduğu ve gaz fazında bir tautomerin
diğerine kıyasla çok daha kararlı olduğu saptanmıştır. Ayrıca optimize
edilen geometrilerde bağ uzunlukları, bağ açıları ve dihedral açıları
karşılaştırılarak tautomerizasyon sürecine ilişkin yapısal değişimler
ayrıntılı biçimde tartışılmıştır. Elde edilen bulgular, triazol temelli
sistemlerin tautomerik davranışına ışık tutmakta ve önceki kristalografik
verilerle birlikte değerlendirildiğinde tamamlayıcı nitelik taşımaktadır. Bu
çalışma, deneysel ve teorik yöntemlerin birlikte kullanımının heterosiklik
bileşiklerde yapı–özellik ilişkilerinin anlaşılmasında ne kadar önemli
olduğunu da göstermektedir

Kaynakça

  • Bektaş, H., Karaali, N., Şahin, D., Demirbaş, A., Karaoglu, Ş. A., & Demirbaş, N. (2010). Synthesis and antimicrobial activities of some new 1, 2, 4-triazole derivatives. Molecules, 15(4), 2427-2438.
  • Becke, A. D. (1993). Density‐functional thermochemistry. III. The role of exact exchange. The Journal of chemical physics, 98(7), 5648-5652.
  • Dennington, R., Keith, T. and Millam, J. (2009) Gauss View, Version 5. Semichem Inc., Shawnee Mission. Fukui, K. (1982). Role of frontier orbitals in chemical reactions. science, 218(4574), 747-754.
  • Fleming, I. (1976). Frontier orbitals and organic chemical reactions London: Wiley. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, et al. (2009). Gaussian 09, Revision D.01. Wallingford CT: Gaussian Inc.
  • Fukui K. (1970). The path of chemical reactions – the IRC approach. Journal of Physical Chemistry 74(23):4161– 4163.
  • Fukui, K. (2006). Theory of orientation and stereoselection. In Orientation and Stereoselection (pp. 1-85). Berlin, Heidelberg: Springer Berlin Heidelberg.
  • González C, Schlegel HB. (1990). An improved algorithm for reaction path following. Journal of Physical Chemistry 94(14):5523–5527.
  • Hohenberg, P., & Kohn, W. (1964). Inhomogeneous electron gas. Physical review, 136(3B), B864.
  • Jha M, Alam O, Naim MJ, Sharma V, Bhatia P, Sheikh AA, Siddiqui N. (2020). Recent advancement in the discovery and development of anti-epileptic biomolecules: An insight into structure activity relationship and docking. European Journal of Pharmaceutical Sciences 153:105494.
  • Karakurt T, Dincer M, Kahveci B, Usta A, Agar E, Sasmaz S. (2004). 3-(p-Chlorobenzyl)-4-(pfluorobenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one. Acta Crystallographica Section ECrystallographic Communications 60(4):o654–o655.
  • Lee C, Yang W, Parr RG. (1988). Development of the Colle–Salvetti correlation-energy formula into a functional of the electron density. Physical Review B 37(2):785–789.
  • Martins MA, Frizzo CP, Moreira DN, Buriol L, Machado P. (2009). Solvent-free heterocyclic synthesis. Chemical Reviews 109(9):4140–4182.
  • Mennucci B. (2010). Continuum solvation models: What else can we learn from them? The Journal of Physical Chemistry Letters 1(10):1666–1674.
  • Parr RG, Pearson RG. (1983). Absolute hardness: companion parameter to absolute electronegativity. Journal of the American Chemical Society 105(26):7512–7516.
  • Parr RG, Szentpály LV, Liu S. (1999). Electrophilicity index. Journal of the American Chemical Society 121(9):1922–1924.
  • Pearson RG. (1987). Recent advances in the concept of hard and soft acids and bases. Journal of Chemical Education 64(7):561.
  • Raczynska ED, Cyranski MK, Gutowski M, Rak J, Gal JF, Maria PC, Duczmal K. (2003). Consequences of proton transfer in guanidine. Journal of Physical Organic Chemistry 16(2):91–106.
  • Reed AE, Curtiss LA, Weinhold F. (1988). Intermolecular interactions from a natural bond orbital, donor–acceptor viewpoint. Chemical Reviews 88(6):899–926.
  • Schlegel HB. (2003). Exploring potential energy surfaces for chemical reactions. Journal of Computational Chemistry 24(12):1514–1527.
  • Sobolewski AL, Domcke W. (2002). Hydrated hydronium: a cluster model of the solvated electron? Physical Chemistry Chemical Physics 4(1):4–10.
  • Xu Z, Zhao SJ, Liu Y. (2019). 1,2,3-Triazole-containing hybrids as potential anticancer agents: Current developments, action mechanisms and structure–activity relationships. European Journal of Medicinal Chemistry 183:111700.
  • Woodward RB, Hoffmann R. (1969). The conservation of orbital symmetry. Angewandte Chemie International Edition in English 8(11):781–853.
  • Zhan CG, Nichols JA, Dixon DA. (2003). Ionization potential, electron affinity, electronegativity, hardness, and electron excitation energy: molecular properties from density functional theory orbital energies. Journal of Physical Chemistry A 107(20):4184–4195.

DFT-BASED INVESTIGATION OF TAUTOMERIC TRANSITION IN AN ORGANIC MOLECULE: TRANSITION STATE AND ELECTRONIC STRUCTURE ANALYSIS

Yıl 2025, Cilt: 1 Sayı: 1, 1 - 10, 26.12.2025
https://izlik.org/JA84WW95NN

Öz

The molecular structure of 3-(p-chlorobenzyl)-4-(pfluorobenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one,
previously determined by single-crystal X-ray diffraction, exhibits
characteristic features suitable for tautomeric isomerism. In this study, two
possible tautomeric forms of the compound were optimized in the gas phase
using density functional theory (DFT) at the B3LYP/6-31G(d) level. To
explore the potential energy surface between the two structures and confirm the nature of the transition state, Intrinsic Reaction Coordinate (IRC)
calculations were performed. Theoretical results reveal a distinct energy
difference, demonstrating that one tautomer is considerably more stable in
the gas phase compared to the alternative form. Structural parameters, bond
lengths, and dihedral angles were carefully examined to highlight the
geometrical changes associated with the tautomerization process. This
theoretical investigation provides valuable insights into the tautomeric
behavior of triazole-based systems and complements previous
crystallographic findings. Moreover, the results underline the importance of
integrating experimental and theoretical approaches to obtain a deeper
understanding of structure–property relationships in heterocyclic
compounds.

Kaynakça

  • Bektaş, H., Karaali, N., Şahin, D., Demirbaş, A., Karaoglu, Ş. A., & Demirbaş, N. (2010). Synthesis and antimicrobial activities of some new 1, 2, 4-triazole derivatives. Molecules, 15(4), 2427-2438.
  • Becke, A. D. (1993). Density‐functional thermochemistry. III. The role of exact exchange. The Journal of chemical physics, 98(7), 5648-5652.
  • Dennington, R., Keith, T. and Millam, J. (2009) Gauss View, Version 5. Semichem Inc., Shawnee Mission. Fukui, K. (1982). Role of frontier orbitals in chemical reactions. science, 218(4574), 747-754.
  • Fleming, I. (1976). Frontier orbitals and organic chemical reactions London: Wiley. Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, et al. (2009). Gaussian 09, Revision D.01. Wallingford CT: Gaussian Inc.
  • Fukui K. (1970). The path of chemical reactions – the IRC approach. Journal of Physical Chemistry 74(23):4161– 4163.
  • Fukui, K. (2006). Theory of orientation and stereoselection. In Orientation and Stereoselection (pp. 1-85). Berlin, Heidelberg: Springer Berlin Heidelberg.
  • González C, Schlegel HB. (1990). An improved algorithm for reaction path following. Journal of Physical Chemistry 94(14):5523–5527.
  • Hohenberg, P., & Kohn, W. (1964). Inhomogeneous electron gas. Physical review, 136(3B), B864.
  • Jha M, Alam O, Naim MJ, Sharma V, Bhatia P, Sheikh AA, Siddiqui N. (2020). Recent advancement in the discovery and development of anti-epileptic biomolecules: An insight into structure activity relationship and docking. European Journal of Pharmaceutical Sciences 153:105494.
  • Karakurt T, Dincer M, Kahveci B, Usta A, Agar E, Sasmaz S. (2004). 3-(p-Chlorobenzyl)-4-(pfluorobenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one. Acta Crystallographica Section ECrystallographic Communications 60(4):o654–o655.
  • Lee C, Yang W, Parr RG. (1988). Development of the Colle–Salvetti correlation-energy formula into a functional of the electron density. Physical Review B 37(2):785–789.
  • Martins MA, Frizzo CP, Moreira DN, Buriol L, Machado P. (2009). Solvent-free heterocyclic synthesis. Chemical Reviews 109(9):4140–4182.
  • Mennucci B. (2010). Continuum solvation models: What else can we learn from them? The Journal of Physical Chemistry Letters 1(10):1666–1674.
  • Parr RG, Pearson RG. (1983). Absolute hardness: companion parameter to absolute electronegativity. Journal of the American Chemical Society 105(26):7512–7516.
  • Parr RG, Szentpály LV, Liu S. (1999). Electrophilicity index. Journal of the American Chemical Society 121(9):1922–1924.
  • Pearson RG. (1987). Recent advances in the concept of hard and soft acids and bases. Journal of Chemical Education 64(7):561.
  • Raczynska ED, Cyranski MK, Gutowski M, Rak J, Gal JF, Maria PC, Duczmal K. (2003). Consequences of proton transfer in guanidine. Journal of Physical Organic Chemistry 16(2):91–106.
  • Reed AE, Curtiss LA, Weinhold F. (1988). Intermolecular interactions from a natural bond orbital, donor–acceptor viewpoint. Chemical Reviews 88(6):899–926.
  • Schlegel HB. (2003). Exploring potential energy surfaces for chemical reactions. Journal of Computational Chemistry 24(12):1514–1527.
  • Sobolewski AL, Domcke W. (2002). Hydrated hydronium: a cluster model of the solvated electron? Physical Chemistry Chemical Physics 4(1):4–10.
  • Xu Z, Zhao SJ, Liu Y. (2019). 1,2,3-Triazole-containing hybrids as potential anticancer agents: Current developments, action mechanisms and structure–activity relationships. European Journal of Medicinal Chemistry 183:111700.
  • Woodward RB, Hoffmann R. (1969). The conservation of orbital symmetry. Angewandte Chemie International Edition in English 8(11):781–853.
  • Zhan CG, Nichols JA, Dixon DA. (2003). Ionization potential, electron affinity, electronegativity, hardness, and electron excitation energy: molecular properties from density functional theory orbital energies. Journal of Physical Chemistry A 107(20):4184–4195.
Toplam 23 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Kimya Mühendisliği (Diğer)
Bölüm Araştırma Makalesi
Yazarlar

Tuncay Karakurt

Gönderilme Tarihi 26 Haziran 2025
Kabul Tarihi 3 Temmuz 2025
Yayımlanma Tarihi 26 Aralık 2025
IZ https://izlik.org/JA84WW95NN
Yayımlandığı Sayı Yıl 2025 Cilt: 1 Sayı: 1

Kaynak Göster

APA Karakurt, T. (2025). DFT-BASED INVESTIGATION OF TAUTOMERIC TRANSITION IN AN ORGANIC MOLECULE: TRANSITION STATE AND ELECTRONIC STRUCTURE ANALYSIS. Ahi Evran Journal of Engineering Sciences, 1(1), 1-10. https://izlik.org/JA84WW95NN