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Topraktan izole edilen aktinomisetlerin lipaz aktivitelerinin belirlenmesi

Yıl 2021, Cilt: 14 Sayı: 3, 487 - 492, 15.12.2021
https://doi.org/10.46309/biodicon.2021.988928

Öz

Bu çalışmada farklı toprak örneklerinden izole edilmiş 156 aktinomiset izolatı kullanılmıştır. İzolatlar uygun besiyerine ekilmiş ve 28°C’de 7-10 gün inkübe edilmiştir. İzolatların kültürel ortamda lipolitik aktivitelerinin incelenmesi amacıyla, hazırlanan lipaz besiyerinde izolatların oluşturdukları şeffaf zon cetvel ile ölçülmüştür. Bunlardan 53 tanesi (%34) 10 mm ve daha az, 99 tanesi (%63) 20 mm ve daha az, 4 tanesi (%3) ise 20 mm’den daha fazla şeffaf zon oluşturmuştur. Tribütirinli besiyerinde en fazla şeffaf zon oluşturan 47 numaralı (21,5 mm) izolatın 16S rRNA gen bölgesine göre yapılan dizi analizi sonucunda GenBank numarası EU283368.1 olan ‘uncultured actinobacterium clone AS42 16S ribosomal RNA gene’ e %97 oranında benzerlik gösterdiği görülmüştür. İzolatın elde edilen 16S rRNA dizi bilgisi GenBank’a KY172825 erişim numarası ile kaydedilmiştir.

Destekleyen Kurum

Eskişehir Teknik Üniversitesi

Proje Numarası

1005F114

Kaynakça

  • [1] Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G. F., Chater, K. F., van Sinderen, D. (2007). Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum. Microbiology and Molecular Biology Reviews, 71(3), 495–548. http://doi.org/10.1128/MMBR.00005-07.
  • [2] Boyd, R.F. (1988). General microbiology. St. Louis, USA: Times Mirror/Mosby College Publishing.
  • [3] Gupta, R., Gupta, N., Rathi, P. (2004). Bacterial lipases: An overview of production, purification and biochemical properties. Applied Microbiology and Biotechnology, 64(6), 763–781. http://doi.org/10.1007/s00253-004-1568-8.
  • [4] Treichel, H., de Oliveira, D., Mazutti, M. A., Di Luccio, M., Oliveira, J. V. (2010). A review on microbial lipases production. Food and Bioprocess Technology, 3(2), 182–196. http://doi.org/10.1007/s11947-009-0202-2.
  • [5] Sharma, A. D., Singh, J. (2005). A nonenzymatic method to isolate genomic DNA from bacteria and actinomycete. Analytical Biochemistry, 337(2), 354–356. http://doi.org/10.1016/j.ab.2004.11.029.
  • [6] Ramesh, S., Mathivanan, N. (2009). Screening of marine actinomycetes isolated from the Bay of Bengal, India for antimicrobial activity and industrial enzymes. World Journal of Microbiology and Biotechnology, 25(12), 2103–2111. http://doi.org/10.1007/s11274-009-0113-4.
  • [7] Shah, A. M., Shakeel-u-Rehman, Hussain, A., Mushtaq, S., Rather, M. A., Shah, A., Ahmad, Z., Khan I. A., Hassan, Q. P. (2017). Antimicrobial investigation of selected soil actinomycetes isolated from unexplored regions of Kashmir Himalayas, India. Microbial Pathogenesis, 110, 93–99. http://doi.org/10.1016/j.micpath.2017.06.017.
  • [8] Hasan, N. A., Nawahwi, M. Z., Yahya, N., Othman, N. A. (2018). Identification and optimization of lipase producing bacteria from palm oil contaminated waste. Journal of Fundamental and Applied Sciences. 10(2S), 300-310. http://dx.doi.org/10.4314/jfas.v10i2s.23.
  • [9] Praveen Kumar, P., Sagaya Jansi, R., Saravana Kumar, P., Nimal Christhudas, I. V. S., Preetam Raj, J. P., Vijayakumar, A., Agastian, P., Ignacimuthu, S. (2017). Optimization of biosynthesis parameters, partial purification and characterization of extracellular lipase from soil derived Streptomyces sp. Loyola Lipase-1. Biocatalysis and Agricultural Biotechnology, 12(10), 241–247. http://doi.org/10.1016/j.bcab.2017.10.011.
  • [10] Veerapagu, M., Narayanan, A. S., Ponmurugan, K., Jeya, K. R. (2013). Screening Selection Identification Production and Optimization of Bacterial Lipase From Oil Spilled Soil. Asian Journal of Pharmaceutical and Clinical Research. 6(3), 62-67.

Determination of lipase activities of actinomycetes isolates from soil

Yıl 2021, Cilt: 14 Sayı: 3, 487 - 492, 15.12.2021
https://doi.org/10.46309/biodicon.2021.988928

Öz

In this study 156 actinomycetes isolates which were isolated from different soil samples were used. Isolates were inoculated proper medium and incubated at 28°C for 7-10 days. In order to investigate the lipolytic activities of the isolates in the culture medium, the transparent zone formed by isolates in the prepared lipase medium was measured with a ruler. 53 of them (34 %) 10 mm and less, 99 of them (63 %) 20 mm and less, 4 of them (3 %) more than 20 mm transparent zone produced. The isolate which showed the highest lipase activity molecular identification has been made which based on 16S rRNA gene sequence. The 16S rRNA sequence information obtained from the isolate was recorded to GenBank with the access number KY172825. As a result of the study has been made on the NCBI database by using BLAST program, it was observed that, isolate showed 97% similarity ‘uncultured actinobacterium clone AS42 16S ribosomal RNA gene’ which’s access number on the database is EU283368.1.

Proje Numarası

1005F114

Kaynakça

  • [1] Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G. F., Chater, K. F., van Sinderen, D. (2007). Genomics of Actinobacteria: Tracing the Evolutionary History of an Ancient Phylum. Microbiology and Molecular Biology Reviews, 71(3), 495–548. http://doi.org/10.1128/MMBR.00005-07.
  • [2] Boyd, R.F. (1988). General microbiology. St. Louis, USA: Times Mirror/Mosby College Publishing.
  • [3] Gupta, R., Gupta, N., Rathi, P. (2004). Bacterial lipases: An overview of production, purification and biochemical properties. Applied Microbiology and Biotechnology, 64(6), 763–781. http://doi.org/10.1007/s00253-004-1568-8.
  • [4] Treichel, H., de Oliveira, D., Mazutti, M. A., Di Luccio, M., Oliveira, J. V. (2010). A review on microbial lipases production. Food and Bioprocess Technology, 3(2), 182–196. http://doi.org/10.1007/s11947-009-0202-2.
  • [5] Sharma, A. D., Singh, J. (2005). A nonenzymatic method to isolate genomic DNA from bacteria and actinomycete. Analytical Biochemistry, 337(2), 354–356. http://doi.org/10.1016/j.ab.2004.11.029.
  • [6] Ramesh, S., Mathivanan, N. (2009). Screening of marine actinomycetes isolated from the Bay of Bengal, India for antimicrobial activity and industrial enzymes. World Journal of Microbiology and Biotechnology, 25(12), 2103–2111. http://doi.org/10.1007/s11274-009-0113-4.
  • [7] Shah, A. M., Shakeel-u-Rehman, Hussain, A., Mushtaq, S., Rather, M. A., Shah, A., Ahmad, Z., Khan I. A., Hassan, Q. P. (2017). Antimicrobial investigation of selected soil actinomycetes isolated from unexplored regions of Kashmir Himalayas, India. Microbial Pathogenesis, 110, 93–99. http://doi.org/10.1016/j.micpath.2017.06.017.
  • [8] Hasan, N. A., Nawahwi, M. Z., Yahya, N., Othman, N. A. (2018). Identification and optimization of lipase producing bacteria from palm oil contaminated waste. Journal of Fundamental and Applied Sciences. 10(2S), 300-310. http://dx.doi.org/10.4314/jfas.v10i2s.23.
  • [9] Praveen Kumar, P., Sagaya Jansi, R., Saravana Kumar, P., Nimal Christhudas, I. V. S., Preetam Raj, J. P., Vijayakumar, A., Agastian, P., Ignacimuthu, S. (2017). Optimization of biosynthesis parameters, partial purification and characterization of extracellular lipase from soil derived Streptomyces sp. Loyola Lipase-1. Biocatalysis and Agricultural Biotechnology, 12(10), 241–247. http://doi.org/10.1016/j.bcab.2017.10.011.
  • [10] Veerapagu, M., Narayanan, A. S., Ponmurugan, K., Jeya, K. R. (2013). Screening Selection Identification Production and Optimization of Bacterial Lipase From Oil Spilled Soil. Asian Journal of Pharmaceutical and Clinical Research. 6(3), 62-67.
Toplam 10 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Biyokimya ve Hücre Biyolojisi (Diğer), Koruma ve Biyolojik Çeşitlilik
Bölüm Research Article
Yazarlar

Gizem Arık 0000-0002-3673-3543

Nalan Yılmaz Sarıözlü 0000-0003-2485-2016

Proje Numarası 1005F114
Yayımlanma Tarihi 15 Aralık 2021
Gönderilme Tarihi 31 Ağustos 2021
Kabul Tarihi 12 Kasım 2021
Yayımlandığı Sayı Yıl 2021 Cilt: 14 Sayı: 3

Kaynak Göster

APA Arık, G., & Yılmaz Sarıözlü, N. (2021). Topraktan izole edilen aktinomisetlerin lipaz aktivitelerinin belirlenmesi. Biological Diversity and Conservation, 14(3), 487-492. https://doi.org/10.46309/biodicon.2021.988928

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