Araştırma Makalesi
BibTex RIS Kaynak Göster
Yıl 2024, Cilt: 2 Sayı: 2, 47 - 55, 29.11.2024
https://doi.org/10.70500/bjs.1563106

Öz

Proje Numarası

1919B012223936

Kaynakça

  • E. Yeldan and E. Voyvoda, “Low Carbon Development Pathways and Priorities for Türkiye,” WWF-Turkey Research Report, Istanbul, 2015.
  • H. Cüce, “Climate Change-Related Natural Disasters: Environmental Effects and Sustainable Monitoring,” IJENT, vol. 7, no. 2, pp. 113-125, 2023.
  • B. Keskin and Ş. Koçoğlu, “Sustainability of the Packaging Industry and Oil Based Plastic: Analysis of the Plastic Packaging Industry's Dependence on Oil,” EJOSAT, no.35, pp. 252-258 Apr. 2022, doi: 10.31590/ejosat.1059720.
  • S. Paslı, “Plastik Katkı Maddeleri ve Sucul Ortama Etkileri,” Recep Tayyip Erdogan University Journal of Science and Engineering,, vol. 3, no. 1, pp. 40-49, Jun. 2022.
  • H. Selamoğlu Çağlayan and Ü. Aytan Kopuz, “Mikroplastiklerin Deniz Çevresinde Neden Olduğu Etkiler,” Voice of Nature, no: 6, pp. 44–56, Dec. 2020.
  • F. Alshehrei, "Biodegradation of Synthetic and Natural Plastic by Microorganisms," J. Appl. Environ. Microbiol., no. 5, vol. 1, pp. 8-19, 2017, doi: 10.12691/jaem-5-1-2.
  • A.A. Horton, C. Svendsen, R.J. Williams, D.J. Spurgeon, and E. Lahive, “Large Microplastic Particles in Sediments of Tributaries of the River Thames, UK–Abundance, Sources and Methods for Effective Quantification," Mar. Pollut. Bull., vol. 114, no. 1, pp. 218-226, Sep. 2017, doi: 10.1016/j.marpolbul.2016.09.004.
  • R. Geyer, J.R. and Jambeck, K.L. “Law, Production, Use, and Fate of All Plastics Ever Made," Sci. Adv., vol. 3, no. 7, Jul. 2017, e1700782.
  • X.P. Guo, Y.R. Chen, X.L. Sun, C.L. Li, L.J. Hou, M. Liu, and Y. Yang, “Plastic Properties Affect the Composition of Prokaryotic and Eukaryotic Communities and Further Regulate the ARGs in Their Surface Biofilms," Sci. Total Environ., vol. 839, 156362, Sep. 2022, doi: 10.1016/j.scitotenv.2022.156362.
  • H. Tulan, and Ö. Yalçıner Ercoşkun, “Göller Yöresinde Sürdürülebilirlik ve Dirençlilik," JMTPR, vol. 2, no. 2, pp. 89-116, Dec. 2021.
  • A. Elmacı, A. Teksoy, F. O. Topaç, N. Özengin, and H. S. Başkaya, “Uluabat Gölünün Mikrobiyolojik Özelliklerinin Mevsimsel Değişiminin İzlenmesi,” UUJFE, vol. 13, no. 1, pp. 93-103, Mar. 2008, doi: 10.17482/uujfe.93575.
  • A.A. Elmanama, S. Afifi, and B. Bahr, “Seasonal and Spatial Variation in the Monitoring Parameters of Gaza Beach During 2002-2003,” Environ. Res., vol. 101, pp. 25-33, Sep. 2006.
  • İ. Gün and F. Y. Ekinci, “Biofilms: Microbial Life On Surfaces,” GIDA, vol. 34, no. 3, pp. 165–173, Mar. 2009.
  • C. De Tender, L. I. Devriese, A. Haegeman, S. Maes, J. Vangeyte, A. Cattrijsse, and T. Ruttink, “Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea,” Environ. Sci. Tech., vol. 51, no. 13, pp. 7350-7360, 2017, doi: 10.1021/acs.est.7b00697.
  • J. N. Huang, B. Wen, L. Miao, X. Liu, Z. J. Li, T. F. Ma, and Z. Z. Chen, “Microplastics Drive Nitrification by Enriching Functional Microorganisms in Aquaculture Pond Waters,” Chemosphere, vol. 309, no.1, 136646, Dec. 2022, doi: 10.1016/j.chemosphere.2022.136646.
  • X.P. Guo, X. L. Sun, Y. R. Chen, L. Hou, M. Liu, and Y. Yang, “Antibiotic Resistance Genes in Biofilms on Plastic Wastes in an Estuarine Environment,” Sci. Total Environ., vol. 745, 140916, Nov. 2020, doi: 10.1016/j.scitotenv.2020.140916.
  • L. Cai, D. Wu, J. Xia, H. Shi, and H. Kim, “Influence of Physicochemical Surface Properties on the Adhesion of Bacteria onto Four Types of Plastics,” Sci. Total Environ., vol. 671, pp. 1101-1107, Jun. 2019, doi: 10.1016/j.scitotenv.2019.03.434.
  • N. Wu, Y. Zhang, Z. Zhao, J. He, W. Li, J. Li, and Z. Niu, “Colonization Characteristics of Bacterial Communities on Microplastics Compared with Ambient Environments (Water and Sediment) in Haihe Estuary,” Sci. Total Environ., vol. 708, 134876 Mar. 2020, doi: 10.1016/j.scitotenv.2019.134876.
  • H. Deng, Q. Fu, D. Li, Y. Zhang, J. He, D. Feng, and C. Ge, “Microplastic-Associated Biofilm in an Intensive Mariculture Pond: Temporal Dynamics of Microbial Communities, Extracellular Polymeric Substances and Impacts on Microplastics Properties,” J. Clean. Prod., vol. 319, 128774, Oct. 2021, doi: 10.1016/j.jclepro.2021.128774.
  • C. Akgöz and S. Güler, “Topçu Göleti (Yozgat) Alg Florası I: Epilitik ve Epifitik Algler,” SUFEFD, vol. 1, no. 23, pp. 7–14, Dec. 2004.
  • K. Sreedharan, R. Philip, and I.S.B. Singh, “Characterization and Virulence Potential of Phenotypically Diverse Aeromonas veronii Isolates Recovered from Moribund Freshwater Ornamental Fishes of Kerala, India,” Antonie Van Leeuwenhoek, vol. 103, no. 1, pp. 53-67, Jan. 2013, doi: 10.1007/s10482-012-9786-z.
  • A. Aberoum, and H. Jooyandeh, “A Review on Occurrence and Characterization of the Aeromonas species from Marine Fishes,” WJFMS, vol. 2, no. 6, pp. 519-523, 2010.
  • H.C. Tekedar, S. Kumru, J. Blom, A. D. Perkins, M. J. Griffin, H. Abdelhamed, A. Karsi, and M. L. Lawrence, “Comparative Genomics of Aeromonas veronii: Identification of a Pathotype Impacting Aquaculture Globally,” PloS one, vol. 14, no. 8, e0221018, Aug. 2019, doi: 10.1371/journal.pone.0221018.
  • H. J. Han, T. Taki, H. Kondo, I. Hirono, and T. Aoki, “Pathogenic Potential of a Collagenase Gene from Aeromonas veronii,” Can. J. Microbiol., vol. 54, no. 1, pp. 1-10, Jan. 2008, doi: 10.1139/w07-109.
  • J. Y. Choi, Y. Kim, E. A. Ko, Y. K. Park, W. H. Jheong, G. Ko, and K. S. Ko, “Acinetobacter Species Isolates from A Range of Environments: Species Survey and Observations of Antimicrobial Resistance,” Diagn. Microbiol. Infect. Dis., vol. 74, no. 2, pp. 177–180, Oct. 2012, doi: 10.1016/j.diagmicrobio.2012.06.023.
  • P. Kämpfer, “Acinetobacter,” Encyclopedia of Food Microbiology, Elsevier Ltd, 2014, pp. 11–17. doi:10.1016/b978-0-12-384730-0.00002-1.
  • J. Lalucat, M. Gomila, M. Mulet, A. Zaruma, and E. García-Valdés, “Past, Present and Future of the Boundaries of the Pseudomonas Genus: Proposal of Stutzerimonas gen Nov. ,” Syst. Appl. Microbiol., vol. 45, no. 1, 126289, 2022, doi:10.1016/j.syapm.2021.126289
  • L. Hunziker, D. Bönisch, U. Groenhagen, A. Bailly, S. Schulz, and L. Weisskopf, “Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans,” Appl. Environ. Microbiol., vol. 81, no. 3, pp. 821–830, Feb. 2015, doi:10.1128/AEM.02999-14.
  • NCBI, “Nucleotide,” https://www.ncbi.nlm.nih.gov/nuccore/CP019427.1 [Access Date: 07-October-2024].
  • A. A. Lopes, Y. Yoshii, S. Yamada, M. Nagakura, Y. Kinjo, Y. Mizunoe, K. and I. Okuda, “Roles of Lytic Transglycosylases in Biofilm Formation and β-lactam Resistance in Methicillin-Resistant Staphylococcus aureus,” Antimicrob. Agents Chemother., vol. 63, no. 12, e01277-19, Dec. 2019, doi:10.1128/AAC.01277-19.
  • K. C. Rice, T. Patton, S. J. Yang, A. Dumoulin, M. Bischoff, and K. W. Bayles, “Transcription of the Staphylococcus aureus cid and lrg Murein Hydrolase Regulators is Affected by Sigma Factor B,” J. Bacteriol., vol. 186, no. 10, pp. 3029–3037, May. 2004, doi:10.1128/JB.186.10.3029-3037.2004.

PlaBacter: Determination of Microbial Diversity on Plastic Polymers in Topçu Pond

Yıl 2024, Cilt: 2 Sayı: 2, 47 - 55, 29.11.2024
https://doi.org/10.70500/bjs.1563106

Öz

Climate change is one of the biggest problems of our world, and one of the biggest measures taken to solve the climate crisis is to reduce the consumption of oil and oil derivatives, which are considered among fossil resources. However, with the globalising world and increasing population, oil companies have turned to the plastic and packaging sector in order to meet the increasing demand for plastic consumption. This situation inevitably increases the environmental damage of plastic waste. In particular, the inability to use water resources correctly and the pollution of water by wastes left in the environment adversely affect the lives of living things on earth. Within the scope of the study, it was aimed to determine the microbial diversity living on polyethylene terephthalate (PET), which is known as the raw material of tools such as plastic bottles, food containers, and fishing line, which are left as waste in the environment, especially in rivers and lake shores. In this context, Topçu Pond, which is an important water source in the field of agricultural irrigation in Yozgat province, was selected as the study area. Genomic DNA (gDNA) was isolated from biofilm layers formed on water, sediment, and PET samples collected from the study area. The bacterial communities living in the samples were identified by analysing the 16S rDNA of the gDNAs with the next-generation sequencing method. Thus, we conducted the first microbial diversity study in Topçu Pond and defined the bacterial composition on PET samples in the pond.

Etik Beyan

-

Destekleyen Kurum

TÜBİTAK

Proje Numarası

1919B012223936

Teşekkür

-

Kaynakça

  • E. Yeldan and E. Voyvoda, “Low Carbon Development Pathways and Priorities for Türkiye,” WWF-Turkey Research Report, Istanbul, 2015.
  • H. Cüce, “Climate Change-Related Natural Disasters: Environmental Effects and Sustainable Monitoring,” IJENT, vol. 7, no. 2, pp. 113-125, 2023.
  • B. Keskin and Ş. Koçoğlu, “Sustainability of the Packaging Industry and Oil Based Plastic: Analysis of the Plastic Packaging Industry's Dependence on Oil,” EJOSAT, no.35, pp. 252-258 Apr. 2022, doi: 10.31590/ejosat.1059720.
  • S. Paslı, “Plastik Katkı Maddeleri ve Sucul Ortama Etkileri,” Recep Tayyip Erdogan University Journal of Science and Engineering,, vol. 3, no. 1, pp. 40-49, Jun. 2022.
  • H. Selamoğlu Çağlayan and Ü. Aytan Kopuz, “Mikroplastiklerin Deniz Çevresinde Neden Olduğu Etkiler,” Voice of Nature, no: 6, pp. 44–56, Dec. 2020.
  • F. Alshehrei, "Biodegradation of Synthetic and Natural Plastic by Microorganisms," J. Appl. Environ. Microbiol., no. 5, vol. 1, pp. 8-19, 2017, doi: 10.12691/jaem-5-1-2.
  • A.A. Horton, C. Svendsen, R.J. Williams, D.J. Spurgeon, and E. Lahive, “Large Microplastic Particles in Sediments of Tributaries of the River Thames, UK–Abundance, Sources and Methods for Effective Quantification," Mar. Pollut. Bull., vol. 114, no. 1, pp. 218-226, Sep. 2017, doi: 10.1016/j.marpolbul.2016.09.004.
  • R. Geyer, J.R. and Jambeck, K.L. “Law, Production, Use, and Fate of All Plastics Ever Made," Sci. Adv., vol. 3, no. 7, Jul. 2017, e1700782.
  • X.P. Guo, Y.R. Chen, X.L. Sun, C.L. Li, L.J. Hou, M. Liu, and Y. Yang, “Plastic Properties Affect the Composition of Prokaryotic and Eukaryotic Communities and Further Regulate the ARGs in Their Surface Biofilms," Sci. Total Environ., vol. 839, 156362, Sep. 2022, doi: 10.1016/j.scitotenv.2022.156362.
  • H. Tulan, and Ö. Yalçıner Ercoşkun, “Göller Yöresinde Sürdürülebilirlik ve Dirençlilik," JMTPR, vol. 2, no. 2, pp. 89-116, Dec. 2021.
  • A. Elmacı, A. Teksoy, F. O. Topaç, N. Özengin, and H. S. Başkaya, “Uluabat Gölünün Mikrobiyolojik Özelliklerinin Mevsimsel Değişiminin İzlenmesi,” UUJFE, vol. 13, no. 1, pp. 93-103, Mar. 2008, doi: 10.17482/uujfe.93575.
  • A.A. Elmanama, S. Afifi, and B. Bahr, “Seasonal and Spatial Variation in the Monitoring Parameters of Gaza Beach During 2002-2003,” Environ. Res., vol. 101, pp. 25-33, Sep. 2006.
  • İ. Gün and F. Y. Ekinci, “Biofilms: Microbial Life On Surfaces,” GIDA, vol. 34, no. 3, pp. 165–173, Mar. 2009.
  • C. De Tender, L. I. Devriese, A. Haegeman, S. Maes, J. Vangeyte, A. Cattrijsse, and T. Ruttink, “Temporal Dynamics of Bacterial and Fungal Colonization on Plastic Debris in the North Sea,” Environ. Sci. Tech., vol. 51, no. 13, pp. 7350-7360, 2017, doi: 10.1021/acs.est.7b00697.
  • J. N. Huang, B. Wen, L. Miao, X. Liu, Z. J. Li, T. F. Ma, and Z. Z. Chen, “Microplastics Drive Nitrification by Enriching Functional Microorganisms in Aquaculture Pond Waters,” Chemosphere, vol. 309, no.1, 136646, Dec. 2022, doi: 10.1016/j.chemosphere.2022.136646.
  • X.P. Guo, X. L. Sun, Y. R. Chen, L. Hou, M. Liu, and Y. Yang, “Antibiotic Resistance Genes in Biofilms on Plastic Wastes in an Estuarine Environment,” Sci. Total Environ., vol. 745, 140916, Nov. 2020, doi: 10.1016/j.scitotenv.2020.140916.
  • L. Cai, D. Wu, J. Xia, H. Shi, and H. Kim, “Influence of Physicochemical Surface Properties on the Adhesion of Bacteria onto Four Types of Plastics,” Sci. Total Environ., vol. 671, pp. 1101-1107, Jun. 2019, doi: 10.1016/j.scitotenv.2019.03.434.
  • N. Wu, Y. Zhang, Z. Zhao, J. He, W. Li, J. Li, and Z. Niu, “Colonization Characteristics of Bacterial Communities on Microplastics Compared with Ambient Environments (Water and Sediment) in Haihe Estuary,” Sci. Total Environ., vol. 708, 134876 Mar. 2020, doi: 10.1016/j.scitotenv.2019.134876.
  • H. Deng, Q. Fu, D. Li, Y. Zhang, J. He, D. Feng, and C. Ge, “Microplastic-Associated Biofilm in an Intensive Mariculture Pond: Temporal Dynamics of Microbial Communities, Extracellular Polymeric Substances and Impacts on Microplastics Properties,” J. Clean. Prod., vol. 319, 128774, Oct. 2021, doi: 10.1016/j.jclepro.2021.128774.
  • C. Akgöz and S. Güler, “Topçu Göleti (Yozgat) Alg Florası I: Epilitik ve Epifitik Algler,” SUFEFD, vol. 1, no. 23, pp. 7–14, Dec. 2004.
  • K. Sreedharan, R. Philip, and I.S.B. Singh, “Characterization and Virulence Potential of Phenotypically Diverse Aeromonas veronii Isolates Recovered from Moribund Freshwater Ornamental Fishes of Kerala, India,” Antonie Van Leeuwenhoek, vol. 103, no. 1, pp. 53-67, Jan. 2013, doi: 10.1007/s10482-012-9786-z.
  • A. Aberoum, and H. Jooyandeh, “A Review on Occurrence and Characterization of the Aeromonas species from Marine Fishes,” WJFMS, vol. 2, no. 6, pp. 519-523, 2010.
  • H.C. Tekedar, S. Kumru, J. Blom, A. D. Perkins, M. J. Griffin, H. Abdelhamed, A. Karsi, and M. L. Lawrence, “Comparative Genomics of Aeromonas veronii: Identification of a Pathotype Impacting Aquaculture Globally,” PloS one, vol. 14, no. 8, e0221018, Aug. 2019, doi: 10.1371/journal.pone.0221018.
  • H. J. Han, T. Taki, H. Kondo, I. Hirono, and T. Aoki, “Pathogenic Potential of a Collagenase Gene from Aeromonas veronii,” Can. J. Microbiol., vol. 54, no. 1, pp. 1-10, Jan. 2008, doi: 10.1139/w07-109.
  • J. Y. Choi, Y. Kim, E. A. Ko, Y. K. Park, W. H. Jheong, G. Ko, and K. S. Ko, “Acinetobacter Species Isolates from A Range of Environments: Species Survey and Observations of Antimicrobial Resistance,” Diagn. Microbiol. Infect. Dis., vol. 74, no. 2, pp. 177–180, Oct. 2012, doi: 10.1016/j.diagmicrobio.2012.06.023.
  • P. Kämpfer, “Acinetobacter,” Encyclopedia of Food Microbiology, Elsevier Ltd, 2014, pp. 11–17. doi:10.1016/b978-0-12-384730-0.00002-1.
  • J. Lalucat, M. Gomila, M. Mulet, A. Zaruma, and E. García-Valdés, “Past, Present and Future of the Boundaries of the Pseudomonas Genus: Proposal of Stutzerimonas gen Nov. ,” Syst. Appl. Microbiol., vol. 45, no. 1, 126289, 2022, doi:10.1016/j.syapm.2021.126289
  • L. Hunziker, D. Bönisch, U. Groenhagen, A. Bailly, S. Schulz, and L. Weisskopf, “Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans,” Appl. Environ. Microbiol., vol. 81, no. 3, pp. 821–830, Feb. 2015, doi:10.1128/AEM.02999-14.
  • NCBI, “Nucleotide,” https://www.ncbi.nlm.nih.gov/nuccore/CP019427.1 [Access Date: 07-October-2024].
  • A. A. Lopes, Y. Yoshii, S. Yamada, M. Nagakura, Y. Kinjo, Y. Mizunoe, K. and I. Okuda, “Roles of Lytic Transglycosylases in Biofilm Formation and β-lactam Resistance in Methicillin-Resistant Staphylococcus aureus,” Antimicrob. Agents Chemother., vol. 63, no. 12, e01277-19, Dec. 2019, doi:10.1128/AAC.01277-19.
  • K. C. Rice, T. Patton, S. J. Yang, A. Dumoulin, M. Bischoff, and K. W. Bayles, “Transcription of the Staphylococcus aureus cid and lrg Murein Hydrolase Regulators is Affected by Sigma Factor B,” J. Bacteriol., vol. 186, no. 10, pp. 3029–3037, May. 2004, doi:10.1128/JB.186.10.3029-3037.2004.
Toplam 31 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Mikrobiyal Ekoloji
Bölüm Research Articles
Yazarlar

Berkan Yeğen 0009-0002-9307-2064

Emine Tuğçe Saraç Cebeci 0000-0002-7219-8015

Şuranur Güneş 0009-0001-5704-1693

Ezgi Doğru 0009-0003-8633-1061

Sevgi Akdeniz 0009-0008-3143-2355

Proje Numarası 1919B012223936
Yayımlanma Tarihi 29 Kasım 2024
Gönderilme Tarihi 8 Ekim 2024
Kabul Tarihi 30 Ekim 2024
Yayımlandığı Sayı Yıl 2024 Cilt: 2 Sayı: 2

Kaynak Göster

IEEE B. Yeğen, E. T. Saraç Cebeci, Ş. Güneş, E. Doğru, ve S. Akdeniz, “PlaBacter: Determination of Microbial Diversity on Plastic Polymers in Topçu Pond”, BJS, c. 2, sy. 2, ss. 47–55, 2024, doi: 10.70500/bjs.1563106.