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Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb

Yıl 2026, Cilt: 9 Sayı: 2, 962 - 970, 15.03.2026
https://doi.org/10.34248/bsengineering.1882575
https://izlik.org/JA63FB94TU

Öz

Biodegradation is a process that occurs in historical structures due to the release of enzymes, organic acids, and other chemical compounds by microorganisms, and it poses a significant threat to the integrity of cultural heritage. In this study, metagenomic analyses were used to determine the microbial diversity present on the walls of the Şeyh Edebali Tomb and to reveal the biodegradation processes occurring on the stone surface. The microbial taxa on the stone surface were identified, and the dominant microbial groups associated with biodegradation were determined. Our results showed that there is a high microbial diversity on the tomb's stone surface, which allowed us to uncover the metabolic impacts of these groups in the biodegradation processes. Particularly, the microbial communities abundant on the stone surface have been shown to possess biofilm formation potential, the ability to adapt to different environmental conditions, and biodegradation properties. The families Pseudomonadaceae (59.53%), Xanthomonadaceae (22.36%), Comamonadaceae (8.75%), and Sphingomonadaceae (5.41%) were identified as the most dominant families. The genera Pseudomonas (84.74%), Sphingomonas (7.28%), and Stutzerimonas (1.27%) were the most abundant. It is predicted that the species within these taxonomic groups contribute to biodegradation processes through different metabolic activities. Identifying the microbial diversity on the stone surface will guide the preservation of historical stone architecture and the transfer of these architectural works to future generations.

Etik Beyan

Ethics committee approval was not required for this study because there was no study on animals or humans.

Destekleyen Kurum

TÜBİTAK

Proje Numarası

2209-A TÜBİTAK

Teşekkür

This study is supported by the Scientific and Technological Research Council of Türkiye (TUBITAK) with project number 2209-A. The authors would like to thank Öznur BİLGİN for her assistance. Permission was obtained from the Ministry of Culture and Tourism, General Directorate of Foundations, Bursa Regional Directorate of Foundations.

Kaynakça

  • Andrews, S., Krueger, F., Segonds-Pichon, A., Biggins, L., Krueger, C., & Wingett, S. (2010). FastQC: A quality control tool for high throughput sequence data [Online]. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
  • Bala, S., Garg, D., Thirumalesh, B. V., Sharma, M., Sridhar, K., Inbaraj, B. S., & Tripathi, M. (2022). Recent strategies for bioremediation of emerging pollutants: A review for a green and sustainable environment. Toxics, 10(8), 484. https://doi.org/10.3390/toxics10080484
  • Bao, Y., Ma, Y., Liu, W., Li, X., Li, Y., Zhou, P., ... & Delgado-Baquerizo, M. (2023). Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. npj Biofilms and Microbiomes, 9(1), 69. https://doi.org/10.1038/s41522-023-00436-x
  • Bayram, S. (2022). Pseudomonas aeruginosa ve pyoverdinler: Apiterapi uygulamalarında gizli bir tehdit. Technology, 5(1), 315–324.
  • Bennett, E. M., Murray, J. W., & Isalan, M. (2023). Engineering nitrogenases for synthetic nitrogen fixation: From pathway engineering to directed evolution. BioDesign Research, 5, 0005. https://doi.org/10.34133/bdr.0005
  • Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114–2120. https://doi.org/10.1093/bioinformatics/btu170
  • Chen, R.-W., Li, C., He, Y.-Q., Cui, L.-Q., Long, L.-J., & Tian, X.-P. (2020). Rubrobacter tropicus sp. nov. and Rubrobacter marinus sp. nov., isolated from deep-sea sediment of the South China Sea. International Journal of Systematic and Evolutionary Microbiology, 70(10), 5576–5585. https://doi.org/10.1099/ijsem.0.004448
  • Dakal, T. C., & Cameotra, S. S. (2012). Microbially induced deterioration of architectural heritages: Routes and mechanisms involved. Environmental Sciences Europe, 24(1), 36. https://doi.org/10.1186/2190-4715-24-36
  • Ding, X., Lan, W., & Gu, J.-D. (2020). A review on sampling techniques and analytical methods for microbiota of cultural properties and historical architecture. Applied Sciences, 10(22), 8099. https://doi.org/10.3390/app10228099
  • Feng, Z., Lugtenberg, M., Franse, C., Fang, X., Hu, S., Jin, C., & Raat, H. (2017). Risk factors and protective factors associated with incident or increase of frailty among community-dwelling older adults: A systematic review of longitudinal studies. PLOS ONE, 12(6), e0178383. https://doi.org/10.1371/journal.pone.0178383
  • Fenibo, E. O., Ijoma, G. N., Selvarajan, R., & Chikere, C. B. (2019). Microbial surfactants: The next generation multifunctional biomolecules for applications in the petroleum industry and its associated environmental remediation. Microorganisms, 7(11), 581. https://doi.org/10.3390/microorganisms7110581
  • Gambino, M., Lepri, G., Štovícek, A., Ghazayarn, L., Villa, F., Gillor, O., & Cappitelli, F. (2021). The tombstones at the Monumental Cemetery of Milano select for a specialized microbial community. International Biodeterioration & Biodegradation, 164, 105298. https://doi.org/10.1016/j.ibiod.2021.105298
  • Gao, N., Zhang, H., Hu, C., Li, Q., Li, L., Lei, P., ... & Shen, W. (2024). Inoculation with Stutzerimonas stutzeri strains decreases N₂O emissions from vegetable soil by altering microbial community composition and diversity. Microbiology Spectrum, 12(5), e00186-24. https://doi.org/10.1128/spectrum.00186-24
  • García, G., Girón, J. A., Yañez, J. A., & Cedillo, M. L. (2022). Stenotrophomonas maltophilia and its ability to form biofilms. Microbiology Research, 14(1), 1–20. https://doi.org/10.3390/microbiolres14010001
  • Gaylarde, C., Ribas Silva, M., & Warscheid, T. (2003). Microbial impact on building materials: An overview. Materials and Structures, 36(5), 342–352. https://doi.org/10.1007/BF02480875
  • Glaeser, S. P., & Kämpfer, P. (2014). The family Sphingomonadaceae. In The Prokaryotes (pp. 641–707). Springer. https://doi.org/10.1007/978-3-642-30197-1_395
  • Gu, J.-D., & Katayama, Y. (2021). Microbiota and biochemical processes involved in biodeterioration of cultural heritage and protection. Microorganisms in the Deterioration and Preservation of Cultural Heritage, 37–58. https://doi.org/10.1007/978-3-030-69832-4_2
  • Jurado, V., Miller, A. Z., Alias-Villegas, C., Laiz, L., & Saiz-Jimenez, C. (2012). Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument. Systematic and Applied Microbiology, 35(5), 306–309. https://doi.org/10.1016/j.syapm.2012.04.004
  • Kocak, F. O., Tanir, S. G. E., Cetin, A. K., & Degirmenci, L. (2023). Simultaneous evaluation of composting experiments and metagenome analyses to illuminate the effect of Streptomyces spp. on organic matter degradation. World Journal of Microbiology and Biotechnology, 39(3), 70. https://doi.org/10.1007/s11274-022-03487-7
  • Kusumi, A., Li, X., Osuga, Y., Kawashima, A., Gu, J.-D., Nasu, M., & Katayama, Y. (2013). Bacterial communities in pigmented biofilms formed on the sandstone bas-relief walls of the Bayon Temple, Angkor Thom, Cambodia. Microbes and Environments, 28(4), 422–431. https://doi.org/10.1264/jsme2.ME13054
  • Laiz, L., Miller, A., Jurado, V., Akatova, E., Sanchez-Moral, S., Gonzalez, J., ... & Saiz-Jimenez, C. (2009). Isolation of five Rubrobacter strains from biodeteriorated monuments. Naturwissenschaften, 96(1), 71–79. https://doi.org/10.1007/s00114-008-0452-1
  • Lee, H. J., & Chung, Y. J. (2022). Optimal growth conditions of microorganisms isolated from the Buyeo Royal Tomb No. 1 and their effects on painting layers. Advances in Microbiology, 12(9), 525–540. https://doi.org/10.4236/aim.2022.129036
  • Li, Y., Zhao, M., Jiang, J., Chen, Y., Chen, H., Zheng, L., ... & Wu, Y. (2025). Metagenomics of the surface of an architectural heritage site: A case study of the Ji family’s residence in the southeast of Shanxi province, China. Coatings, 15(3), 337. https://doi.org/10.3390/coatings15030337
  • Liu, X., Qian, Y., Wu, F., Wang, Y., Wang, W., & Gu, J.-D. (2022). Biofilms on stone monuments: Biodeterioration or bioprotection? Trends in Microbiology, 30(9), 816–819. https://doi.org/10.1016/j.tim.2022.04.008
  • Nogales, J., García, J. L., & Díaz, E. (2019). Degradation of aromatic compounds in Pseudomonas: A systems biology view. In Aerobic Utilization of Hydrocarbons, Oils, and Lipids (pp. 639–687). Springer. https://doi.org/10.1007/978-3-319-50418-6_20
  • Nuhoğlu, Y., Var, M., Koçak, E., Uslu, H., & Demir, H. (2017). In situ investigation of the biodeteriorative microorganisms lived on stone surfaces of the Sumela Monastery (Trabzon, Turkey). Journal of Environmental & Analytical Toxicology, 7(5), 494. https://doi.org/10.4172/2161-0525.1000494
  • Özdemir, A., Erguven, G. O., Adar, E., & Nuhoglu, Y. (2020). Investigation on microbial biodeterioration of the stone monuments in Yildiz Technical University—Yildiz Campus—Istanbul—Turkey. Current Microbiology, 77(11), 3288–3299. https://doi.org/10.1007/s00284-020-02146-7
  • Pat, F., Pedük, S. F., Akçay, N., Pat, H. K. K., & Arıcan, E. (2024). Eber Gölü prokaryotik çeşitliliğinin metagenomik çalışmasıyla karakterizasyonu. Journal of the Institute of Science and Technology, 14(1), 437–446. https://doi.org/10.21597/jist.1332822
  • Piñar, G., Poyntner, C., Tafer, H., & Sterflinger, K. (2019). A time travel story: Metagenomic analyses decipher the unknown geographical shift and the storage history of possibly smuggled antique marble statues. Annals of Microbiology, 69(10), 1001–1021. https://doi.org/10.1007/s13213-019-01494-1
  • Ryan, R. P., Monchy, S., Cardinale, M., Taghavi, S., Crossman, L., Avison, M. B., ... & Dow, J. M. (2009). The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nature Reviews Microbiology, 7(7), 514–525. https://doi.org/10.1038/nrmicro2163
  • Sakr, A. A., Ghaly, M. F., & Abdel-Haliem, M. E. (2018). Microbial kaolinization of granite stones within the tomb of the King Oserkon II, Tanis, Lower Egypt. Periodico di Mineralogia, 87(3), 213–225. https://doi.org/10.2451/2018PM809
  • Scheerer, S., Ortega‐Morales, O., & Gaylarde, C. (2009). Microbial deterioration of stone monuments—an updated overview. Advances in Applied Microbiology, 66, 97–139. https://doi.org/10.1016/S0065-2164(08)00805-8
  • Silva, I., Dias, L., Salvador, C., Miller, A. Z., Candeias, A., & Caldeira, A. T. (2024). Microbial induced stone discoloration in Alcobaça monastery: A comprehensive study. Journal of Cultural Heritage, 67, 248–257. https://doi.org/10.1016/j.culher.2024.03.003
  • Todai, T., Takahashi, F., Yasuoka, S., Sato, T., Abe, K., Takikawa, Y., & Kondo, N. (2022). Pseudomonas amygdali (syn. Pseudomonas savastanoi) pv. adzukicola pv. nov., causal agent of bacterial stem rot of adzuki bean. Journal of General Plant Pathology, 88(6), 358–371. https://doi.org/10.1007/s10327-022-01086-4
  • Ulusoy, D., & İşçen, C. F. (2023). Pseudomonas hydrolytica bakterisi ile piren hidrokarbonunun biyodegradasyonu. Biyoloji Bilimleri Araştırma Dergisi, 16(1), 26–37.
  • Wang, Y., Wang, C., Hou, L., Yang, X., Li, C., Cui, S., ... & Liu, Y. (2024). Microbial diversity and biodegradation mechanism of microorganisms in the Dingtao M2 tomb. International Journal of Molecular Sciences, 25(22), 12270. https://doi.org/10.3390/ijms252212270
  • Weglarz, K. M. (2019). Investigating the roles of bacterial endosymbionts in the evolution of Adelgidae (Hemiptera: Sternorrhyncha) [Doctoral dissertation, Utah State University].
  • Willems, A. (2014). The family Comamonadaceae. In The Prokaryotes (pp. 777–851). Springer. https://doi.org/10.1007/978-3-642-30197-1_244
  • Wood, D. E., & Salzberg, S. L. (2014). Kraken: Ultrafast metagenomic sequence classification using exact alignments. Genome Biology, 15(3), R46. https://doi.org/10.1186/gb-2014-15-3-r46
  • Wu, F., Ding, X., Zhang, Y., Gu, J.-D., Liu, X., Guo, Q., ... & Feng, H. (2023). Metagenomic and metaproteomic insights into the microbiome and the key geobiochemical potentials on the sandstone of rock-hewn Beishiku Temple in Northwest China. Science of the Total Environment, 893, 164616. https://doi.org/10.1016/j.scitotenv.2023.164616
  • Xing, W., Qi, B., Chen, R., Ding, W., & Zhang, F. (2023). Metagenomic analysis reveals taxonomic and functional diversity of microbial communities on the deteriorated wall paintings of Qinling Tomb in the Southern Tang Dynasty, China. BMC Microbiology, 23(1), 140. https://doi.org/10.1186/s12866-023-02888-2
  • Yadav, S., & Purchase, D. (2025). Biodeterioration of cultural heritage monuments: A review of their deterioration mechanisms and conservation. International Biodeterioration & Biodegradation, 201, 106066. https://doi.org/10.1016/j.ibiod.2025.106066
  • Zhang, L., Liu, H., Dai, J., Xu, P., & Tang, H. (2022). Unveiling degradation mechanism of PAHs by a Sphingobium strain from a microbial consortium. mLife, 1(3), 287–302. https://doi.org/10.1002/mlf2.12034
  • Zhu, Y., Han, Y., Liu, G., Bian, Z., Yan, X., Li, Y., ... & Wang, Y. (2022). Novel indole-mediated potassium ion import system confers a survival advantage to the Xanthomonadaceae family. The ISME Journal, 16(7), 1717–1729. https://doi.org/10.1038/s41396-022-01217-0

Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb

Yıl 2026, Cilt: 9 Sayı: 2, 962 - 970, 15.03.2026
https://doi.org/10.34248/bsengineering.1882575
https://izlik.org/JA63FB94TU

Öz

Biodegradation is a process that occurs in historical structures due to the release of enzymes, organic acids, and other chemical compounds by microorganisms, and it poses a significant threat to the integrity of cultural heritage. In this study, metagenomic analyses were used to determine the microbial diversity present on the walls of the Şeyh Edebali Tomb and to reveal the biodegradation processes occurring on the stone surface. The microbial taxa on the stone surface were identified, and the dominant microbial groups associated with biodegradation were determined. Our results showed that there is a high microbial diversity on the tomb's stone surface, which allowed us to uncover the metabolic impacts of these groups in the biodegradation processes. Particularly, the microbial communities abundant on the stone surface have been shown to possess biofilm formation potential, the ability to adapt to different environmental conditions, and biodegradation properties. The families Pseudomonadaceae (59.53%), Xanthomonadaceae (22.36%), Comamonadaceae (8.75%), and Sphingomonadaceae (5.41%) were identified as the most dominant families. The genera Pseudomonas (84.74%), Sphingomonas (7.28%), and Stutzerimonas (1.27%) were the most abundant. It is predicted that the species within these taxonomic groups contribute to biodegradation processes through different metabolic activities. Identifying the microbial diversity on the stone surface will guide the preservation of historical stone architecture and the transfer of these architectural works to future generations.

Etik Beyan

Ethics committee approval was not required for this study because there was no study on animals or humans.

Destekleyen Kurum

TÜBİTAK

Proje Numarası

2209-A TÜBİTAK

Teşekkür

This study is supported by the Scientific and Technological Research Council of Türkiye (TUBITAK) with project number 2209-A. The authors would like to thank Öznur BİLGİN for her assistance. Permission was obtained from the Ministry of Culture and Tourism, General Directorate of Foundations, Bursa Regional Directorate of Foundations.

Kaynakça

  • Andrews, S., Krueger, F., Segonds-Pichon, A., Biggins, L., Krueger, C., & Wingett, S. (2010). FastQC: A quality control tool for high throughput sequence data [Online]. http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
  • Bala, S., Garg, D., Thirumalesh, B. V., Sharma, M., Sridhar, K., Inbaraj, B. S., & Tripathi, M. (2022). Recent strategies for bioremediation of emerging pollutants: A review for a green and sustainable environment. Toxics, 10(8), 484. https://doi.org/10.3390/toxics10080484
  • Bao, Y., Ma, Y., Liu, W., Li, X., Li, Y., Zhou, P., ... & Delgado-Baquerizo, M. (2023). Innovative strategy for the conservation of a millennial mausoleum from biodeterioration through artificial light management. npj Biofilms and Microbiomes, 9(1), 69. https://doi.org/10.1038/s41522-023-00436-x
  • Bayram, S. (2022). Pseudomonas aeruginosa ve pyoverdinler: Apiterapi uygulamalarında gizli bir tehdit. Technology, 5(1), 315–324.
  • Bennett, E. M., Murray, J. W., & Isalan, M. (2023). Engineering nitrogenases for synthetic nitrogen fixation: From pathway engineering to directed evolution. BioDesign Research, 5, 0005. https://doi.org/10.34133/bdr.0005
  • Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: A flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114–2120. https://doi.org/10.1093/bioinformatics/btu170
  • Chen, R.-W., Li, C., He, Y.-Q., Cui, L.-Q., Long, L.-J., & Tian, X.-P. (2020). Rubrobacter tropicus sp. nov. and Rubrobacter marinus sp. nov., isolated from deep-sea sediment of the South China Sea. International Journal of Systematic and Evolutionary Microbiology, 70(10), 5576–5585. https://doi.org/10.1099/ijsem.0.004448
  • Dakal, T. C., & Cameotra, S. S. (2012). Microbially induced deterioration of architectural heritages: Routes and mechanisms involved. Environmental Sciences Europe, 24(1), 36. https://doi.org/10.1186/2190-4715-24-36
  • Ding, X., Lan, W., & Gu, J.-D. (2020). A review on sampling techniques and analytical methods for microbiota of cultural properties and historical architecture. Applied Sciences, 10(22), 8099. https://doi.org/10.3390/app10228099
  • Feng, Z., Lugtenberg, M., Franse, C., Fang, X., Hu, S., Jin, C., & Raat, H. (2017). Risk factors and protective factors associated with incident or increase of frailty among community-dwelling older adults: A systematic review of longitudinal studies. PLOS ONE, 12(6), e0178383. https://doi.org/10.1371/journal.pone.0178383
  • Fenibo, E. O., Ijoma, G. N., Selvarajan, R., & Chikere, C. B. (2019). Microbial surfactants: The next generation multifunctional biomolecules for applications in the petroleum industry and its associated environmental remediation. Microorganisms, 7(11), 581. https://doi.org/10.3390/microorganisms7110581
  • Gambino, M., Lepri, G., Štovícek, A., Ghazayarn, L., Villa, F., Gillor, O., & Cappitelli, F. (2021). The tombstones at the Monumental Cemetery of Milano select for a specialized microbial community. International Biodeterioration & Biodegradation, 164, 105298. https://doi.org/10.1016/j.ibiod.2021.105298
  • Gao, N., Zhang, H., Hu, C., Li, Q., Li, L., Lei, P., ... & Shen, W. (2024). Inoculation with Stutzerimonas stutzeri strains decreases N₂O emissions from vegetable soil by altering microbial community composition and diversity. Microbiology Spectrum, 12(5), e00186-24. https://doi.org/10.1128/spectrum.00186-24
  • García, G., Girón, J. A., Yañez, J. A., & Cedillo, M. L. (2022). Stenotrophomonas maltophilia and its ability to form biofilms. Microbiology Research, 14(1), 1–20. https://doi.org/10.3390/microbiolres14010001
  • Gaylarde, C., Ribas Silva, M., & Warscheid, T. (2003). Microbial impact on building materials: An overview. Materials and Structures, 36(5), 342–352. https://doi.org/10.1007/BF02480875
  • Glaeser, S. P., & Kämpfer, P. (2014). The family Sphingomonadaceae. In The Prokaryotes (pp. 641–707). Springer. https://doi.org/10.1007/978-3-642-30197-1_395
  • Gu, J.-D., & Katayama, Y. (2021). Microbiota and biochemical processes involved in biodeterioration of cultural heritage and protection. Microorganisms in the Deterioration and Preservation of Cultural Heritage, 37–58. https://doi.org/10.1007/978-3-030-69832-4_2
  • Jurado, V., Miller, A. Z., Alias-Villegas, C., Laiz, L., & Saiz-Jimenez, C. (2012). Rubrobacter bracarensis sp. nov., a novel member of the genus Rubrobacter isolated from a biodeteriorated monument. Systematic and Applied Microbiology, 35(5), 306–309. https://doi.org/10.1016/j.syapm.2012.04.004
  • Kocak, F. O., Tanir, S. G. E., Cetin, A. K., & Degirmenci, L. (2023). Simultaneous evaluation of composting experiments and metagenome analyses to illuminate the effect of Streptomyces spp. on organic matter degradation. World Journal of Microbiology and Biotechnology, 39(3), 70. https://doi.org/10.1007/s11274-022-03487-7
  • Kusumi, A., Li, X., Osuga, Y., Kawashima, A., Gu, J.-D., Nasu, M., & Katayama, Y. (2013). Bacterial communities in pigmented biofilms formed on the sandstone bas-relief walls of the Bayon Temple, Angkor Thom, Cambodia. Microbes and Environments, 28(4), 422–431. https://doi.org/10.1264/jsme2.ME13054
  • Laiz, L., Miller, A., Jurado, V., Akatova, E., Sanchez-Moral, S., Gonzalez, J., ... & Saiz-Jimenez, C. (2009). Isolation of five Rubrobacter strains from biodeteriorated monuments. Naturwissenschaften, 96(1), 71–79. https://doi.org/10.1007/s00114-008-0452-1
  • Lee, H. J., & Chung, Y. J. (2022). Optimal growth conditions of microorganisms isolated from the Buyeo Royal Tomb No. 1 and their effects on painting layers. Advances in Microbiology, 12(9), 525–540. https://doi.org/10.4236/aim.2022.129036
  • Li, Y., Zhao, M., Jiang, J., Chen, Y., Chen, H., Zheng, L., ... & Wu, Y. (2025). Metagenomics of the surface of an architectural heritage site: A case study of the Ji family’s residence in the southeast of Shanxi province, China. Coatings, 15(3), 337. https://doi.org/10.3390/coatings15030337
  • Liu, X., Qian, Y., Wu, F., Wang, Y., Wang, W., & Gu, J.-D. (2022). Biofilms on stone monuments: Biodeterioration or bioprotection? Trends in Microbiology, 30(9), 816–819. https://doi.org/10.1016/j.tim.2022.04.008
  • Nogales, J., García, J. L., & Díaz, E. (2019). Degradation of aromatic compounds in Pseudomonas: A systems biology view. In Aerobic Utilization of Hydrocarbons, Oils, and Lipids (pp. 639–687). Springer. https://doi.org/10.1007/978-3-319-50418-6_20
  • Nuhoğlu, Y., Var, M., Koçak, E., Uslu, H., & Demir, H. (2017). In situ investigation of the biodeteriorative microorganisms lived on stone surfaces of the Sumela Monastery (Trabzon, Turkey). Journal of Environmental & Analytical Toxicology, 7(5), 494. https://doi.org/10.4172/2161-0525.1000494
  • Özdemir, A., Erguven, G. O., Adar, E., & Nuhoglu, Y. (2020). Investigation on microbial biodeterioration of the stone monuments in Yildiz Technical University—Yildiz Campus—Istanbul—Turkey. Current Microbiology, 77(11), 3288–3299. https://doi.org/10.1007/s00284-020-02146-7
  • Pat, F., Pedük, S. F., Akçay, N., Pat, H. K. K., & Arıcan, E. (2024). Eber Gölü prokaryotik çeşitliliğinin metagenomik çalışmasıyla karakterizasyonu. Journal of the Institute of Science and Technology, 14(1), 437–446. https://doi.org/10.21597/jist.1332822
  • Piñar, G., Poyntner, C., Tafer, H., & Sterflinger, K. (2019). A time travel story: Metagenomic analyses decipher the unknown geographical shift and the storage history of possibly smuggled antique marble statues. Annals of Microbiology, 69(10), 1001–1021. https://doi.org/10.1007/s13213-019-01494-1
  • Ryan, R. P., Monchy, S., Cardinale, M., Taghavi, S., Crossman, L., Avison, M. B., ... & Dow, J. M. (2009). The versatility and adaptation of bacteria from the genus Stenotrophomonas. Nature Reviews Microbiology, 7(7), 514–525. https://doi.org/10.1038/nrmicro2163
  • Sakr, A. A., Ghaly, M. F., & Abdel-Haliem, M. E. (2018). Microbial kaolinization of granite stones within the tomb of the King Oserkon II, Tanis, Lower Egypt. Periodico di Mineralogia, 87(3), 213–225. https://doi.org/10.2451/2018PM809
  • Scheerer, S., Ortega‐Morales, O., & Gaylarde, C. (2009). Microbial deterioration of stone monuments—an updated overview. Advances in Applied Microbiology, 66, 97–139. https://doi.org/10.1016/S0065-2164(08)00805-8
  • Silva, I., Dias, L., Salvador, C., Miller, A. Z., Candeias, A., & Caldeira, A. T. (2024). Microbial induced stone discoloration in Alcobaça monastery: A comprehensive study. Journal of Cultural Heritage, 67, 248–257. https://doi.org/10.1016/j.culher.2024.03.003
  • Todai, T., Takahashi, F., Yasuoka, S., Sato, T., Abe, K., Takikawa, Y., & Kondo, N. (2022). Pseudomonas amygdali (syn. Pseudomonas savastanoi) pv. adzukicola pv. nov., causal agent of bacterial stem rot of adzuki bean. Journal of General Plant Pathology, 88(6), 358–371. https://doi.org/10.1007/s10327-022-01086-4
  • Ulusoy, D., & İşçen, C. F. (2023). Pseudomonas hydrolytica bakterisi ile piren hidrokarbonunun biyodegradasyonu. Biyoloji Bilimleri Araştırma Dergisi, 16(1), 26–37.
  • Wang, Y., Wang, C., Hou, L., Yang, X., Li, C., Cui, S., ... & Liu, Y. (2024). Microbial diversity and biodegradation mechanism of microorganisms in the Dingtao M2 tomb. International Journal of Molecular Sciences, 25(22), 12270. https://doi.org/10.3390/ijms252212270
  • Weglarz, K. M. (2019). Investigating the roles of bacterial endosymbionts in the evolution of Adelgidae (Hemiptera: Sternorrhyncha) [Doctoral dissertation, Utah State University].
  • Willems, A. (2014). The family Comamonadaceae. In The Prokaryotes (pp. 777–851). Springer. https://doi.org/10.1007/978-3-642-30197-1_244
  • Wood, D. E., & Salzberg, S. L. (2014). Kraken: Ultrafast metagenomic sequence classification using exact alignments. Genome Biology, 15(3), R46. https://doi.org/10.1186/gb-2014-15-3-r46
  • Wu, F., Ding, X., Zhang, Y., Gu, J.-D., Liu, X., Guo, Q., ... & Feng, H. (2023). Metagenomic and metaproteomic insights into the microbiome and the key geobiochemical potentials on the sandstone of rock-hewn Beishiku Temple in Northwest China. Science of the Total Environment, 893, 164616. https://doi.org/10.1016/j.scitotenv.2023.164616
  • Xing, W., Qi, B., Chen, R., Ding, W., & Zhang, F. (2023). Metagenomic analysis reveals taxonomic and functional diversity of microbial communities on the deteriorated wall paintings of Qinling Tomb in the Southern Tang Dynasty, China. BMC Microbiology, 23(1), 140. https://doi.org/10.1186/s12866-023-02888-2
  • Yadav, S., & Purchase, D. (2025). Biodeterioration of cultural heritage monuments: A review of their deterioration mechanisms and conservation. International Biodeterioration & Biodegradation, 201, 106066. https://doi.org/10.1016/j.ibiod.2025.106066
  • Zhang, L., Liu, H., Dai, J., Xu, P., & Tang, H. (2022). Unveiling degradation mechanism of PAHs by a Sphingobium strain from a microbial consortium. mLife, 1(3), 287–302. https://doi.org/10.1002/mlf2.12034
  • Zhu, Y., Han, Y., Liu, G., Bian, Z., Yan, X., Li, Y., ... & Wang, Y. (2022). Novel indole-mediated potassium ion import system confers a survival advantage to the Xanthomonadaceae family. The ISME Journal, 16(7), 1717–1729. https://doi.org/10.1038/s41396-022-01217-0
Toplam 44 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Mikrobiyal Taksonomi, Genomik
Bölüm Araştırma Makalesi
Yazarlar

Fadime Özdemir 0000-0002-8557-5166

Mehmet Eren Tüzer 0009-0001-4811-2269

Proje Numarası 2209-A TÜBİTAK
Gönderilme Tarihi 5 Şubat 2026
Kabul Tarihi 12 Mart 2026
Yayımlanma Tarihi 15 Mart 2026
DOI https://doi.org/10.34248/bsengineering.1882575
IZ https://izlik.org/JA63FB94TU
Yayımlandığı Sayı Yıl 2026 Cilt: 9 Sayı: 2

Kaynak Göster

APA Özdemir, F., & Tüzer, M. E. (2026). Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb. Black Sea Journal of Engineering and Science, 9(2), 962-970. https://doi.org/10.34248/bsengineering.1882575
AMA 1.Özdemir F, Tüzer ME. Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb. BSJ Eng. Sci. 2026;9(2):962-970. doi:10.34248/bsengineering.1882575
Chicago Özdemir, Fadime, ve Mehmet Eren Tüzer. 2026. “Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb”. Black Sea Journal of Engineering and Science 9 (2): 962-70. https://doi.org/10.34248/bsengineering.1882575.
EndNote Özdemir F, Tüzer ME (01 Mart 2026) Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb. Black Sea Journal of Engineering and Science 9 2 962–970.
IEEE [1]F. Özdemir ve M. E. Tüzer, “Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb”, BSJ Eng. Sci., c. 9, sy 2, ss. 962–970, Mar. 2026, doi: 10.34248/bsengineering.1882575.
ISNAD Özdemir, Fadime - Tüzer, Mehmet Eren. “Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb”. Black Sea Journal of Engineering and Science 9/2 (01 Mart 2026): 962-970. https://doi.org/10.34248/bsengineering.1882575.
JAMA 1.Özdemir F, Tüzer ME. Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb. BSJ Eng. Sci. 2026;9:962–970.
MLA Özdemir, Fadime, ve Mehmet Eren Tüzer. “Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb”. Black Sea Journal of Engineering and Science, c. 9, sy 2, Mart 2026, ss. 962-70, doi:10.34248/bsengineering.1882575.
Vancouver 1.Fadime Özdemir, Mehmet Eren Tüzer. Metagenomic Identification of Biodeteriorative Microorganisms on the Stone Surface of the Şeyh Edebali Tomb. BSJ Eng. Sci. 01 Mart 2026;9(2):962-70. doi:10.34248/bsengineering.1882575

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