Araştırma Makalesi

Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data

Cilt: 3 Sayı: 3 1 Temmuz 2020
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EN

Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data

Öz

In this study we aimed to examine the effects of both Nei’s genetic distance and Bray Curtis distance versus geographical distance for Mantel test on chicken diversity data. Many researchers used Nei’s genetic distance which measure that genetic differences arise due to mutations and genetic drift but some researchers used Bray Curtis distance which used to quantify the compositional dissimilarity between two different locations. We used molecular data from 28 microsatellite loci with the sample size of 364 local chicken from 45 locations and Euclidean distance of this locations using Google Earth v.4. Mantel test results suggest that relationship between genetic differentiations and geographic distance between populations using Bray Curtis distance could be substituted for Nei’s genetic distance with great reliability on chicken diversity data.

Anahtar Kelimeler

Kaynakça

  1. Anderson MJ. 2006. Distance-Based tests for homogeneity of multivariate dispersions. Biometrics, 62: 245 – 253.
  2. Beier S, Mohit V, Ettema TJG, Östman Ö, Tranvik LJ, Bertilsson S. 2012. Pronounced seasonal dynamics of freshwater chitinase genes and chitin processing. Environmental Microbiology, 14(9): 2467 – 2479.
  3. Bennett AB, Gratton C. 2013. Floral diversity increases beneficial arthropod richness and decreases variability in arthropod community composition. Ecological Applications, 23: 86–95.
  4. Blum MJ, Bagley MJ, Walters DM, Jackson SA, Daniel FB, Chaloud DJ, Cade BS. 2012. Genetic diversity and species diversity of stream fishes covary across a land-use gradient. Oecologia, 168: 83–95.
  5. Bonnet, E, Van de Peer Y. 2002. ZT: a software tool for simple and partial Mantel tests. Journal of Statistical Software, 7: 1–12.
  6. Cordier T, Robin C, Capdevielle X, Desprez-Loustau ML, Vacher C. 2012. Spatial variability of phyllosphere fungal assemblages: genetic distance predominates over geographic distance in a European beech stand (Fagus sylvatica). Fungal Ecology, 5: 509 – 520.
  7. Costa D, Bouchon D, Van Straalen NM, Sousa JP, Riberio R. 2013. Copper tolerance and genetic diversity of porcellionides sexfasciatus (ISOPODA) in a highly contaminated mine habitat. Environmental Toxicology and Chemistry, 32(4): 884–888.
  8. Eckholm BJ, Anderson KE, Weiss M, DeGrandi-Hoffman G. 2011. Intracolonial genetic diversity in honeybee (Apis mellifera) colonies increases pollen foraging efficiency. Behav Ecol Sociobiol, 65: 1037 – 1044.

Ayrıntılar

Birincil Dil

İngilizce

Konular

Mühendislik

Bölüm

Araştırma Makalesi

Yayımlanma Tarihi

1 Temmuz 2020

Gönderilme Tarihi

31 Ocak 2020

Kabul Tarihi

3 Mart 2020

Yayımlandığı Sayı

Yıl 2020 Cilt: 3 Sayı: 3

Kaynak Göster

APA
Onder, H., & Mercan, L. (2020). Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data. Black Sea Journal of Engineering and Science, 3(3), 76-80. https://doi.org/10.34248/bsengineering.682950
AMA
1.Onder H, Mercan L. Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data. BSJ Eng. Sci. 2020;3(3):76-80. doi:10.34248/bsengineering.682950
Chicago
Onder, Hasan, ve Levent Mercan. 2020. “Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data”. Black Sea Journal of Engineering and Science 3 (3): 76-80. https://doi.org/10.34248/bsengineering.682950.
EndNote
Onder H, Mercan L (01 Temmuz 2020) Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data. Black Sea Journal of Engineering and Science 3 3 76–80.
IEEE
[1]H. Onder ve L. Mercan, “Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data”, BSJ Eng. Sci., c. 3, sy 3, ss. 76–80, Tem. 2020, doi: 10.34248/bsengineering.682950.
ISNAD
Onder, Hasan - Mercan, Levent. “Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data”. Black Sea Journal of Engineering and Science 3/3 (01 Temmuz 2020): 76-80. https://doi.org/10.34248/bsengineering.682950.
JAMA
1.Onder H, Mercan L. Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data. BSJ Eng. Sci. 2020;3:76–80.
MLA
Onder, Hasan, ve Levent Mercan. “Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data”. Black Sea Journal of Engineering and Science, c. 3, sy 3, Temmuz 2020, ss. 76-80, doi:10.34248/bsengineering.682950.
Vancouver
1.Hasan Onder, Levent Mercan. Comparison of Bray Curtis and Nei’s Genetic Distance on Mantel Test for Chicken Diversity Data. BSJ Eng. Sci. 01 Temmuz 2020;3(3):76-80. doi:10.34248/bsengineering.682950

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