EFFECT OF OPTIMIZATION SEQUENCE ON THE STRUCTURAL AND ELECTRONIC PROPERTIES OF IMPURITY ADDED C20 FULLERENE: A DFT ASSESMENT
Yıl 2025,
Cilt: 13 Sayı: 1, 35 - 42, 28.02.2025
Özge Bağlayan
,
Cemal Parlak
,
Özgür Alver
Öz
Due to its advantages over experimental works, density functional theory as a computational approach provides many insights before going over the expensive and timely costs of experimental studies. However, the time required to perform a computational study depends on the number of atoms or size of the investigated molecular system and the capacity of the computational sources. In the framework of this study, we have investigated different optimization procedures to see the effect on optimization energy, electronic parameters and some important structural parameters by using modified fullerene-C20. The question that was tried to be answered here is, independent of the computational source, “do we really have to build a given molecular system from the very beginning of its components or can the final structure be directly optimized?”. The preliminary results suggested very small differences such as (1-2) cm-1 for OH vibrations, 0.003 Å for inter atomic distances at the interaction sites and 0.003-0.018 eV energy alterations for frontier molecular orbitals. The results suggest a way to room more space and time for further studies based on impurity added C20-fullerenes.
Kaynakça
- [1] Tabtimsai C, Watkhaolam S, Palasri S, Rakrai W, Kaewtong C, Wanno B. Ibuprofen adsorption and detection of pristine, Fe–, Ni–, and Pt–doped boron nitride nanotubes: A DFT investigation. J Mol Graph Model 2024; 126: 108654.
- [2] Odey MO, Okon GA, Al-Sehemi AG, Adindu EA, Kavil YN, Agwamba EC, Bakheet AM, Pembere AMS, Louis H. Single-atoms (B, P, S, Si) doping of Pt-coordinated graphitic carbon nitride (Pt@g-C3N4) nanostructured as sensors for Buprofezin (BPF) insecticide: Outlook from computational study. J Organomet Chem 2023; 1002: 122923.
- [3] Salem-Bekhit MM, Al Zahrani S, Alhabib NA, Maaliw III, RR, Da'i M, Mirzaei M. Metal-doped fullerenes as promising drug carriers of hydroxycarbamide anticancer: Insights from density functional theory. Chem Phys Impact 2023; 7: 100347.
- [4] Roy RS, Banerjee S, Ghosh S, Ghosh A, Das AK. A comparative study of electronic structure, adsorption properties, and optical responses of furan and tetrahydrofuran adsorbed pristine, Al and Ga doped B12X12 (X=N and P) nanocages. J Mol Struct 2024; 1296: 136854.
- [5] Zainula R, Khaleel AQ, Ahmed HH, Menon SV, Hamid JA, Al Khatib AO, Aljeboree AM, Elawad A. Exploring the interaction between graphyne and Purinethol: A DFT study of drug loading capacity. Comput Theor Chem 2024; 1238: 114731.
- [6] Daboe M, Parlak C, Alver Ö. Density Functional Theory Investigation On Drug-Drug Interactions: Escitalopram And Salicylic Acid, Eskişehir Technical Univ J of Sci and Tech B–Theo. Sci. 2023; 11(1); 36-42.
- [7] Shettia NP, Mishra A, Basu S, Aminabhavi TM. Versatile fullerenes as sensor materials. Mat Today Chem 2021; 20: 100454.
- [8] Ogunwale GJ, Louis H, Gber TE, Adeyinka AS. Modeling of pristine, Ir- and Au-decorated C60 fullerenes as sensors for detection of hydroxyurea and nitrosourea drugs. J Environ Chem Eng 2022; 10: 108802.
- [9] Saadh MJ, Alsaedi II, Abbood MA, Yadav A, ALsailawi HA, Mudhafar M, Jihad Hemid Al-Athari A, Elmasry Y, Alawadi AH. Therapeutic potential of CX (X = 48, 60, and 70) fullerenes as drug delivery carriers for ifosfamide anti-cancer drug. Diam Relat Mater 2023; 140: 110494.
- [10] Kalika EB, Bondarev NV, Katin KP, Kochaev AI, Grekova AA, Kaya S, Bauetdinov YA, Maslov MM. Adsorption of 40 low molecular weight drugs on pristine and fluorinated C60 fullerenes: Ab initio, statistical and neural networks analysis. J Mol Liq 2023; 377: 121559.
- [11] Milon Roy D, Ahmed F. A DFT study to investigate the physical, electrical, optical properties and thermodynamic functions of boron nanoclusters (MxB2n0; x=1,2, n=3,4,5). Heliyon 2023; 9(7): 17886.
- [12] Gupta D, Ranjan R, Shukla M. Molecular interaction of curcumin with silver nanocluster: A DFT study. Vib Spectrosc 2023; 129: 103604.
- [13] Tomasi J, Mennucci B, Cammi R. Quantum mechanical continuum solvation models. Chem Rev 2005; 105: 2999–3094.
- [14] Kosar N, Tahir H, Ayub K, Mahmood T. DFT studies of single and multiple alkali metals doped C24 fullerene for electronics and nonlinear optical applications. J Mol Graph Model 2024; 105: 107867.
- [15] Esrafili MD, Sadeghi S. A DFT investigation into the possibility of using noble gas encapsulated fullerenes for Li storage. Chem Phys Lett 2022; 787: 139236.
- [16] Mittal M, Kumar A. Carbon nanotube (CNT) gas sensors for emissions from fossil fuel burning. Sens Actuators B Chem 2014; 203: 349–362.
- [17] Frisch MJ, Trucks GW, Schlegel HB. et al. Gaussian 09, Revision A.1, Gaussian Inc., Wallingford, CT, 2009.
- [18] Dennington RD, Keith TA, Millam JM. GaussView 5.0.8, Gaussian Inc., 2008.
- [19] Hadipour NL, Peyghan AA, Soleymanabadi H. Theoretical study on the Al-doped ZnO nanoclusters for CO chemical sensors. J Phys Chem C 2015; 119: 6398–6404.
EFFECT OF OPTIMIZATION SEQUENCE ON THE STRUCTURAL AND ELECTRONIC PROPERTIES OF IMPURITY ADDED C20 FULLERENE: A DFT ASSESMENT
Yıl 2025,
Cilt: 13 Sayı: 1, 35 - 42, 28.02.2025
Özge Bağlayan
,
Cemal Parlak
,
Özgür Alver
Öz
Due to its advantages over experimental works, density functional theory as a computational approach provides many insights before going over the expensive and timely costs of experimental studies. However, the time required to perform a computational study depends on the number of atoms or size of the investigated molecular system and the capacity of the computational sources. In the framework of this study, we have investigated different optimization procedures to see the effect on optimization energy, electronic parameters and some important structural parameters by using modified fullerene-C20. The question that was tried to be answered here is, independent of the computational source, “do we really have to build a given molecular system from the very beginning of its components or can the final structure be directly optimized?”. The preliminary results suggested very small differences such as (1-2) cm-1 for OH vibrations, 0.003 Å for inter atomic distances at the interaction sites and 0.003-0.018 eV energy alterations for frontier molecular orbitals. The results suggest a way to room more space and time for further studies based on impurity added C20-fullerenes.
Kaynakça
- [1] Tabtimsai C, Watkhaolam S, Palasri S, Rakrai W, Kaewtong C, Wanno B. Ibuprofen adsorption and detection of pristine, Fe–, Ni–, and Pt–doped boron nitride nanotubes: A DFT investigation. J Mol Graph Model 2024; 126: 108654.
- [2] Odey MO, Okon GA, Al-Sehemi AG, Adindu EA, Kavil YN, Agwamba EC, Bakheet AM, Pembere AMS, Louis H. Single-atoms (B, P, S, Si) doping of Pt-coordinated graphitic carbon nitride (Pt@g-C3N4) nanostructured as sensors for Buprofezin (BPF) insecticide: Outlook from computational study. J Organomet Chem 2023; 1002: 122923.
- [3] Salem-Bekhit MM, Al Zahrani S, Alhabib NA, Maaliw III, RR, Da'i M, Mirzaei M. Metal-doped fullerenes as promising drug carriers of hydroxycarbamide anticancer: Insights from density functional theory. Chem Phys Impact 2023; 7: 100347.
- [4] Roy RS, Banerjee S, Ghosh S, Ghosh A, Das AK. A comparative study of electronic structure, adsorption properties, and optical responses of furan and tetrahydrofuran adsorbed pristine, Al and Ga doped B12X12 (X=N and P) nanocages. J Mol Struct 2024; 1296: 136854.
- [5] Zainula R, Khaleel AQ, Ahmed HH, Menon SV, Hamid JA, Al Khatib AO, Aljeboree AM, Elawad A. Exploring the interaction between graphyne and Purinethol: A DFT study of drug loading capacity. Comput Theor Chem 2024; 1238: 114731.
- [6] Daboe M, Parlak C, Alver Ö. Density Functional Theory Investigation On Drug-Drug Interactions: Escitalopram And Salicylic Acid, Eskişehir Technical Univ J of Sci and Tech B–Theo. Sci. 2023; 11(1); 36-42.
- [7] Shettia NP, Mishra A, Basu S, Aminabhavi TM. Versatile fullerenes as sensor materials. Mat Today Chem 2021; 20: 100454.
- [8] Ogunwale GJ, Louis H, Gber TE, Adeyinka AS. Modeling of pristine, Ir- and Au-decorated C60 fullerenes as sensors for detection of hydroxyurea and nitrosourea drugs. J Environ Chem Eng 2022; 10: 108802.
- [9] Saadh MJ, Alsaedi II, Abbood MA, Yadav A, ALsailawi HA, Mudhafar M, Jihad Hemid Al-Athari A, Elmasry Y, Alawadi AH. Therapeutic potential of CX (X = 48, 60, and 70) fullerenes as drug delivery carriers for ifosfamide anti-cancer drug. Diam Relat Mater 2023; 140: 110494.
- [10] Kalika EB, Bondarev NV, Katin KP, Kochaev AI, Grekova AA, Kaya S, Bauetdinov YA, Maslov MM. Adsorption of 40 low molecular weight drugs on pristine and fluorinated C60 fullerenes: Ab initio, statistical and neural networks analysis. J Mol Liq 2023; 377: 121559.
- [11] Milon Roy D, Ahmed F. A DFT study to investigate the physical, electrical, optical properties and thermodynamic functions of boron nanoclusters (MxB2n0; x=1,2, n=3,4,5). Heliyon 2023; 9(7): 17886.
- [12] Gupta D, Ranjan R, Shukla M. Molecular interaction of curcumin with silver nanocluster: A DFT study. Vib Spectrosc 2023; 129: 103604.
- [13] Tomasi J, Mennucci B, Cammi R. Quantum mechanical continuum solvation models. Chem Rev 2005; 105: 2999–3094.
- [14] Kosar N, Tahir H, Ayub K, Mahmood T. DFT studies of single and multiple alkali metals doped C24 fullerene for electronics and nonlinear optical applications. J Mol Graph Model 2024; 105: 107867.
- [15] Esrafili MD, Sadeghi S. A DFT investigation into the possibility of using noble gas encapsulated fullerenes for Li storage. Chem Phys Lett 2022; 787: 139236.
- [16] Mittal M, Kumar A. Carbon nanotube (CNT) gas sensors for emissions from fossil fuel burning. Sens Actuators B Chem 2014; 203: 349–362.
- [17] Frisch MJ, Trucks GW, Schlegel HB. et al. Gaussian 09, Revision A.1, Gaussian Inc., Wallingford, CT, 2009.
- [18] Dennington RD, Keith TA, Millam JM. GaussView 5.0.8, Gaussian Inc., 2008.
- [19] Hadipour NL, Peyghan AA, Soleymanabadi H. Theoretical study on the Al-doped ZnO nanoclusters for CO chemical sensors. J Phys Chem C 2015; 119: 6398–6404.