INVESTIGATING THE EFFECTS OF GLUCOSE, GLUTAMINE, AND 5-FLUORODEOXYURIDINE (FUDR) ON CILIA LENGTH AND INTRAFLAGELLAR TRANSPORT DYNAMICS IN Caenorhabditis elegans
Abstract
Keywords
Sensory Cilia, Glucose, Glutamine, 5-Fluorodeoxyuridine (FUDR), C. elegans
Ethical Statement
References
- [1] Turan MG, Orhan ME, Cevik S, Kaplan OI. CiliaMiner: an integrated database for ciliopathy genes and ciliopathies. Database (Oxford) Jul 26; 2023:baad047.
- [2] Blacque OE, Cevik S, Kaplan OI. Intraflagellar transport: from molecular characterisation to mechanism. Front Biosci, 2008; Jan 1; 13:2633-52.
- [3] Prevo B, Scholey JM, Peterman EJG. Intraflagellar transport: mechanisms of motor action, cooperation, and cargo delivery. FEBS J. 2017; Sep; 284(18):2905-2931.
- [4] Steidl ME, Nigro EA, Nielsen AK, Pagliarini R, Cassina L, Lampis M, Podrini C, Chiaravalli M, Mannella V, Distefano G, et al. Primary cilia sense glutamine availability and respond via asparagine synthetase. Nat Metab, 2023; 5, 385–397.
- [5] Ou G, Koga M, Blacque OE, Murayama T, Ohshima Y, Schafer JC, Li C, Yoder BK, Leroux MR. Sensory ciliogenesis in Caenorhabditis elegans: assignment of IFT components into distinct modules based on transport and phenotypic profiles. Mol Biol Cell, 2007; May; 18(5):1554-69.
- [6] Yi P, Li WJ, Dong MQ, Ou G. Dynein-Driven Retrograde Intraflagellar Transport Is Triphasic in C. elegans Sensory Cilia. Curr Biol, 2017; May 22; 27(10):1448-1461.e7.
- [7] Cevik S, Peng X, Beyer T, Pir MS, Yenisert F, Woerz F, Hoffmann F, Altunkaynak B, Pir B, Boldt K, et.al. WDR31 displays functional redundancy with GTPase-activating proteins (GAPs) ELMOD and RP2 in regulating IFT complex and recruiting the BBSome to cilium. Life Sci Alliance, 2023; May 19;6(8):e202201844.
- [8] Schneider C, Rasband W & Eliceiri K. NIH Image to ImageJ: 25 years of image analysis. Nat Methods, 2012; 9, 671–675.
- [9] Mangeol P, Prevo B & Peterman EJG. KymographClear and KymographDirect: two tools for the automated quantitative analysis of molecular and cellular dynamics using kymographs. Molecular Biology of the Cell, 2016; 27(12), 1948–1957.
- [10] Turan MG, Kantarci H, Temtek SD, Cakici O, Cevik S, Kaplan OI. Protocol for determining the average speed and frequency of kinesin and dynein-driven intraflagellar transport (IFT) in C. elegans. STAR Protoc, 2022; Sep 16; 3(3):101498.