EN
Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis
Abstract
In this study, the interaction between the 12 indole-bearing azo compounds (a-l), which were previously synthesized by our research group, and two proteins, 2XIR and 5TGZ, was investigated using an in silico method. The ligand-protein interaction parameters and quantities were determined via molecular docking simulation studies. Since compound e has the lowest docking scores for both 2XIR and 5TGZ, it was selected for additional research on binding interactions. Both e-2XIR and e-5TGZ had docking scores that were lower than those of the control molecules. ADMET characteristics (absorption, distribution, metabolism, excretion, and toxicity) were anticipated using the ADMETlab 2.0 and ProTox-II server. Compound b was categorized as having the greatest levels of toxicity, falling into the sixth toxicity class.
Keywords
References
- F. de Sa Alves, E. Barreiro, C. Manssour Fraga, From Nature to Drug Discovery: The Indole Scaffold as a “Privileged Structure,” Mini Rev. Med. Chem., 9 (2009) 782–793.
- P.F. Lamie, J.N. Philoppes, Design, synthesis, stereochemical determination, molecular docking study, in silico pre-ADMET prediction and anti-proliferative activities of indole-pyrimidine derivatives as Mcl-1 inhibitors, Bioorg. Chem., 116 (2021) 105335.
- H. Abdel-Gawad, H.A. Mohamed, K.M. Dawood, F.A.-R. Badria, Synthesis and Antiviral Activity of New Indole-Based Heterocycles, Chem. Pharm. Bull (Tokyo)., 58 (2010) 1529–1531.
- Y. Li, H. Wu, L. Tang, C. Feng, J. Yu, Y. Li, Y. Yang, B. Yang, Q. He, The potential insulin sensitizing and glucose lowering effects of a novel indole derivative in vitro and in vivo, Pharmacol. Res., 56 (2007) 335–343.
- M.S. Estevão, L.C. Carvalho, D. Ribeiro, D. Couto, M. Freitas, A. Gomes, L.M. Ferreira, E. Fernandes, M.M.B. Marques, Antioxidant activity of unexplored indole derivatives: Synthesis and screening, Eur. J. Med. Chem., 45 (2010) 4869–4878.
- S. Battaglia, E. Boldrini, F. Da Settimo, G. Dondio, C. La Motta, A.M. Marini, G. Primofiore, Indole amide derivatives: synthesis, structure–activity relationships and molecular modelling studies of a new series of histamine H1-receptor antagonists, Eur. J. Med. Chem., 34 (1999) 93–105.
- M.A.A. Radwan, E.A. Ragab, N.M. Sabry, S.M. El-Shenawy, Synthesis and biological evaluation of new 3-substituted indole derivatives as potential anti-inflammatory and analgesic agents, Bioorg. Med. Chem., 15 (2007) 3832–3841.
- A.Y. Alzahrani, Y.A. Ammar, M.A. Salem, M. Abu‐Elghait, A. Ragab, Design, synthesis, molecular modeling, and antimicrobial potential of novel 3‐[(1H ‐pyrazol‐3‐yl)imino]indolin‐2‐one derivatives as DNA gyrase inhibitors, Arch. Pharm (Weinheim)., 355 (2022) e2100266.
Details
Primary Language
English
Subjects
Biomolecular Modelling and Design
Journal Section
Research Article
Publication Date
April 1, 2024
Submission Date
October 26, 2023
Acceptance Date
December 9, 2023
Published in Issue
Year 2024 Volume: 52 Number: 2
APA
Dilek, Ö., Tilki, T., & Karabacak Atay, Ç. (2024). Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis. Hacettepe Journal of Biology and Chemistry, 52(2), 129-138. https://doi.org/10.15671/hjbc.1381196
AMA
1.Dilek Ö, Tilki T, Karabacak Atay Ç. Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis. HJBC. 2024;52(2):129-138. doi:10.15671/hjbc.1381196
Chicago
Dilek, Ömer, Tahir Tilki, and Çiğdem Karabacak Atay. 2024. “Indole-Bearing Azo Compounds: Molecular Docking and in Silico ADMET Analysis”. Hacettepe Journal of Biology and Chemistry 52 (2): 129-38. https://doi.org/10.15671/hjbc.1381196.
EndNote
Dilek Ö, Tilki T, Karabacak Atay Ç (April 1, 2024) Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis. Hacettepe Journal of Biology and Chemistry 52 2 129–138.
IEEE
[1]Ö. Dilek, T. Tilki, and Ç. Karabacak Atay, “Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis”, HJBC, vol. 52, no. 2, pp. 129–138, Apr. 2024, doi: 10.15671/hjbc.1381196.
ISNAD
Dilek, Ömer - Tilki, Tahir - Karabacak Atay, Çiğdem. “Indole-Bearing Azo Compounds: Molecular Docking and in Silico ADMET Analysis”. Hacettepe Journal of Biology and Chemistry 52/2 (April 1, 2024): 129-138. https://doi.org/10.15671/hjbc.1381196.
JAMA
1.Dilek Ö, Tilki T, Karabacak Atay Ç. Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis. HJBC. 2024;52:129–138.
MLA
Dilek, Ömer, et al. “Indole-Bearing Azo Compounds: Molecular Docking and in Silico ADMET Analysis”. Hacettepe Journal of Biology and Chemistry, vol. 52, no. 2, Apr. 2024, pp. 129-38, doi:10.15671/hjbc.1381196.
Vancouver
1.Ömer Dilek, Tahir Tilki, Çiğdem Karabacak Atay. Indole-Bearing Azo Compounds: Molecular Docking and in silico ADMET Analysis. HJBC. 2024 Apr. 1;52(2):129-38. doi:10.15671/hjbc.1381196