Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana

Gökmen Koç

doi:10.31015/jaefs.2020.2.12

EN

Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana

Abstract

Surveys were conducted at tomato production sites in Adana province in 2019. 53 tomato plants have been collected showing the virus symptom due to determining its prevalence. The collected samples were tested for 13 different viral agents harmful to tomatoes using ELISA and RT-PCR methods. 24.52% TYLCV and 9.43% PLRV were detected from the tested samples. When DNA sequencing comparisons are made from RT-PCR products, 98,74% of PLRV isolates in tomato samples collected from Adana province are homogical similarity with Belgium potato isolate (KX364206.1). Also it clustered at 99.37% similar to same branch with New Zealand (GU002341.1) (BLAST at NCBI).

Keywords

Tomato,TYLCV,PLRV,ELISA

Supporting Institution

Çukurova Üniversitesi

Thanks

Thanks to Assoc Prof.Dr Hakan Fidan for his efforts and academic support from Plant Protection Dept., Faculty of Agriculture, Akdeniz University. Also thanks to Prof.Dr.M.Asil YILMAZ from University of Çukurova for critical review of this manuscript.

References

Al-Ali, E., Al-Hashash, H., Ben Heji A., Al-Aqeel, H., 2016. First Report Of Tomato Yellow Leaf Curl Virus İnfecting Cucumber İn Kuwait. Kuwait Institute For Scientific Research, Kuwait City, Kuwait. March 2016, Volume 100, Number 3 Page 656.
Anfoka, G. H., Abhary, M., And Nakhla, M. K., 2005. Molecular İdentification Of Species Of The Tomato Yellow Leaf Curl Virus Complex İn Jordan. Journal Of Plant Pathology, 65-70.
Anfoka, G., Haj Ahmad, F., Abhary, M., And Hussein, A., 2009. Detection And Molecular Characterization Of Viruses Associated With Tomato Yellow Leaf Curl Disease İn Cucurbit Crops İn Jordan. Plant Pathology, 58(4), 754-762.
Asia Batool, M. Aslam Khan, Jehanzeb Farooq, Sardar Muhammad Mughal And Yasir Iftikhar 2011. Elisa-Based Screening Of Potato Germplasm Against Potato Leaf Roll Virus, J. Agric. Res., 2011, 49(1)
Atalay, E., 2018. Çukurova Bölgesi’nde Domates Sarı Yaprak Kıvırcıklık Virüsü (Tomato Yellow Leaf Curl Virus, Tylcv)’ Nün Irklarının Araştırılması. Çukurova Ünverstesi, Fen Blmler Enstitüsü, Bitki Koruma Anabilim Dalı, Yüksek Lisans Tezi, 65 Pp.
Avidov, H. Z., 1944. Tobacco Whitefly İn Israel. Tel Aviv: Hassadeh (İn Hebrew), Pp. 1–33.
Banttari, E. E., 1965. "Occurrence Of Aster Yellows In Barley In Fıeld And Its Comparıson Wıth Barley Yellow Dwarf." Phytopathology 55.8: 838.
Bhutta AR And Bhatti MFJ, 2002. Seed Potato Certification İn Pakistan. Federal Seed Certification And Registration Department Ministry Of Food Agriculture And Livestock, Islamabad, Pakistan. 60-66.
Bostan, H. And K. Haliloğlu., 2004. Distrubition Of PLRV, PVS, PVX And PVY (PVYN, Pvyo And PVYC ) İn The Seed Potato Tubers İn Turkey. Pakistan J. Of Biological Sciences 7 (7): 1140- 1143.
Clark, M. F., & Adams, A. N., 1977.Characteristics Of The Microplate Method Of Enzyme-Linked İmmunosorbent Assay For The Detection Of Plant Viruses. Journal Of General Virology, 34(3), 475-483.

Czosnek, H., And H. Laterrot., 1997. "A Worldwide Survey Of Tomato Yellow Leaf Curl Viruses." Archives Of Virology 142.7: 1391-1406.
Çıtır, A., 1982. Erzurum Ve Çevresindeki Tohumluk Patates Virüs Hastalıkları Ve Bunların Tanılanması Üzerinde Bazı Araştırmalar. Doğa Bilim Dergisi 6(3): 99-109.
Dalmon, A. And Marchoux, G., 2000. Tomato Yellow Leaf Curl Virus Host Plants. Phytoma, (527), 14-17.
Dolar, M.S. Tekinel, N., Nas, Y.Z. 1976. Adana, Antalya, Gaziantep, Hatay, İçel Ve Kahramanmaraş İlleri Patateslerinde Virüs Hastalıklarının Ve Kesafetlerinin Simptomatolojik Olarak Tespiti Üzerinde Çalışmalar. Bitki Koruma Bülteni. 16: 2, 92 – 100FAO, 2017. Www.Fao.Gov.Tr
Fidan H, Sarikaya P, Calis O., 2019. First Report Of Tomato Brown Rugose Fruit Virus On Tomato İn Turkey. Doi: Http://Dx.Doi.Org/10.5197/J.2044-0588.2019.039.018.
Fidan, H 2020 Tomato Brown Rugose Fruit Virus (Tobrfv): Current Situation And Future Prospects, Medıterranean Agrıcultural Scıences (2020) 33(1): 43-49 DOI:0.29136/Mediterranean.705740
Fidan, H., Karacaoğlu, M., Çağlar, B.K., Koç, G., Satar G., 2011. Domates Sarı Yaprak Kıvırcıklık Virüsü (Tomato Yellow Leaf Curl Virus (TYLCV)) Irklarının Ve Vektör Bemisia Tabaci (Hemiptera Aleyrodidae) Biotype İlişkisinin Belirlenmesi Türkiye IV. Bitki Koruma Kongresi, 28-30 Haziran 2011.
Gazel, M., Ç.U. Serçe, K. Çağlayan, Ş. Yavuz, M. Mukanasgil, M.E.Çalışkan., 2009. Patateslerde PVY’ Nin Agristrip İle Teşhisi. Türkiye 3. Bitki Koruma Kongresi Bildirileri, 207 S., 15-18 Temmuz, Van
Gronenborn, B., 2007. The Tomato Yellow Leaf Curl Virus Genome And Function Of Its Proteins. – In: Czosnek, H. (Ed.) Tomato Yellow Leaf Curl Virus Disease: Management, Molecular Biology, Breeding For Resistance. Springer, Dordrecht, Pp. 67-84
Gugerli, P. 1979a. Potato Virus A And Potato Leafroll Virus: Purification, Antiserum Production And Serological Detection İn Potato And Test Plants By Enzymelinked İmmunosorbent Assay (ELISA). Phytopathologische Zeitschrift. 96: 2, 97 – 107.
Günay, A., 1992. Özel Sebze Yetiştiriciliği, Cilt V, Ankara.
Güner, Ü., Ve Yorgancı, Ü., 2006. Niğde Ve Nevşehir İlleri Patates Ekiliş Alanlarında Saptanan Viral Etmenler. Bitki Koruma Bülteni, 46(1-4), 35-49.
Hanson P, Lu S, Wang Jf, Chen W, Kenyon L, Tan Cw, Kwee Lt, Wang Yy, Hsu Yc, Schafleitner R, Ledesma D, Yang Ry., 2016. Conventional And Molecular Marker-Assisted Selection And Pyramiding Of Genes For Multiple Disease Resistance İn Tomato. Scientia Horticulturae 201: 346-54
Harrison BD, 1984. Descriptions Of Plant Viruses CMI/AAB. Potato Leafroll Virus (Revised).Www.Dpvweb.Net/Dpv/Showdpv.P Hpdpvno 36: 198- 291.
Jafarpour, B. Teakle, D.S., Thomas. J.E. 1988. Incidence Of Potato Viruses S And X And Potato Leafroll Virus İn Potatoes İn Queensland. Australasian Plant Pathology. 17: 1, 4 – 6.
Karut K, Malik Aay, Kazak C, Kamberoğlu, Ma Ve Ulusoy Mr., 2012. Adana (Balcalı)’Da Farklı Kültür Bitkilerinde Bemisia Tabaci (Gennadius 1889) (Hemiptera: Aleyrodidae) Biyotiplerinin İki Farklı Moleküler Tanılama Yöntemi İle Belirlenmesi. Türk. Entomol. Derg., 2012, 36 (1): 93-100.
Kil EJ, Kim S, Lee YJ, Byun HS, Park J, Seo H, Kim CS, Shim JK, Lee JH, Kim JK, Lee KY (2016). Tomato Yellow Leaf Curl Virus (TYLCV-IL): A Seed-Transmissible Geminivirus İn Tomatoes. Scientific Reports.6:19013.
Köklü, G., Rojas, A., Kvarnheden, A., 2006. Molecular İdentification And The Complete Nucleotide Sequence Of A Tomato Yellow Leaf Curl Virus İsolate From Turkey. Journal Of Plant Pathology (2006), 88(1), 61-66.
Lapidot, M., And Friedmann, M., 2002. Breeding For Resistance To Whitefly‐Transmitted Geminiviruses. Annals Of Applied Biology, 140(2), 109-127.
Lapidot, M., And Polston, J. E., 2006. Resistance To Tomato Yellow Leaf Curl Virus İn Tomato. In Natural Resistance Mechanisms Of Plants To Viruses (Pp. 503-520). Springer, Dordrecht.
Mayer A, Johnson J, Ivanovskiĭ DI, Beijerinck MW, Baur E (2009) UÈ Ber Die Mosaikkrankheit Des Tabaks (İn German), Concerning The Mosaic Disease Of Tobacco. Die Landwirtschaftliche Versuchs-Stationen 1942(32): 451-67.
Papayiannis, L. C., Iacovides, T. A., Katis, N. I., Brown, J. K., 2010. Differentiation Of Tomato Yellow Leaf Curl Virus And Tomato Yellow Leaf Curl Sardinia Virus Using Real-Time Taqman® PCR. Journal Of Virological Methods, 165(2), 238-245.
Polston, J. E., Bois, D., Serra, C. A., And Concepcion, S., 1994. First Report Of A Tomato Yellow Leaf Curl-Like Geminivirus İn The Western Hemisphere. Plant Disease, 78(8).
Radcliffe, E. B. And Ragsdale, D. W., 2002. Aphid-Transmitted Potato Viruses: The İmportance Of Understanding Vector Biology. American Journal Of Potato Research, 79(5), 353-386.
Singh R.P., Kurz J., Boiteau G., Bernard G.,1995. Detection Of Potato Leaf Roll Virus İn Single Aphids By The Reverse Transcription Polymerase Chain Reaction And İts Potential Epidemiological Application. Journal Of Virological Methods 55: 133-143.
Sivaprasad Y., W. Viera1, J. Buitron, K. Orbe And L. Ayala 2016. Fırst Report Of Potato Leaf Roll Vırus In Tree Tomato In Ecuador Journal Of Plant Pathology (2016), 98 (1), 171-185.
Sökmen, M., Ali, A. Y. A. N., Şevik, M. A., 2005. Trabzon Ve Bayburt İllerinde Tohumluk Patates (Solanum Tuberosum L.) Yumrularında Belirlenen Virüsler. Anadolu Tarım Bilimleri Dergisi, 20(3), 23-26.
Whitworth, J.L., Samson, R.G., Allen, T.C., Mosley, A.R., 1993. Detection Of Potato Leafroll Virus By Visual İnspection,Direct Tissue Blotthing And ELISA Tecniques. American Potato Journal. 70: 6, 497-503.
Yardımcı N., Kılıç H Çulal., And Demir Y. 2015 Detection Of PVY, PVX, PVS, PVA, And PLRV On Different Potato Varieties İn Turkey Using DAS-ELISA, J. Agr. Sci. Tech. (2015) Vol. 17: 757-764.,
Yazgan, A., Fidan, S., 1996. Tokat Koşullarına Uygun Kiraz Domates (Lycopersicon Esculentum Mill. Var. Cerasiforme) Çeşitlerinin Belirlenmesi. GAP, 1, 7-10.
Yılmaz M.A., 1978. Tomato Yellow Leaf Curl Virus On Tomato. Doğa, 4: 248-250.
Yılmaz, M., 2016. Hatay İli Örtüaltı Organik Domates Yetiştiriciliğinde Bazı Begomovirüslerin Enfeksiyon Oranları İle Doğal Taşınma Ve Diğer Konukçularının Araştırılması. Yüksek Lisans Tezi, Mustafa Kemal Üniversitesi Fen Bilimleri Enstitüsü, Bitki Koruma Anabilim Dalı, Hatay.
Yılmaz, M.A., Baloğlu S., Özaslan, M., Güldür, M.E. (1995). GAP Bölgesinde Kültür Bitkilerinde Belirlenen Virüsler. GAP Bölgesi Bitki Koruma Sorunları Ve Çözüm Önerileri Sempozyumu, Nisan 27-29, 1995, Şanlıurfa, Türkiye, Kongre Kitabı, 241-250.

Details

Primary Language

English

Subjects

Botany

Journal Section

Research Article

Authors

Gökmen Koç ^*
0000-0003-0473-0230
Türkiye

Publication Date

June 15, 2020

Submission Date

April 2, 2020

Acceptance Date

June 5, 2020

Published in Issue

Year 2020 Volume: 4 Number: 2

DOI

https://doi.org/10.31015/jaefs.2020.2.12

IZ

https://izlik.org/JA33DL96KG

APA

Koç, G. (2020). Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana. International Journal of Agriculture Environment and Food Sciences, 4(2), 216-223. https://doi.org/10.31015/jaefs.2020.2.12

AMA

1.Koç G. Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana. int. j. agric. environ. food sci. 2020;4(2):216-223. doi:10.31015/jaefs.2020.2.12

Chicago

Koç, Gökmen. 2020. “Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana”. International Journal of Agriculture Environment and Food Sciences 4 (2): 216-23. https://doi.org/10.31015/jaefs.2020.2.12.

EndNote

Koç G (June 1, 2020) Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana. International Journal of Agriculture Environment and Food Sciences 4 2 216–223.

IEEE

[1]G. Koç, “Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana”, int. j. agric. environ. food sci., vol. 4, no. 2, pp. 216–223, June 2020, doi: 10.31015/jaefs.2020.2.12.

ISNAD

Koç, Gökmen. “Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana”. International Journal of Agriculture Environment and Food Sciences 4/2 (June 1, 2020): 216-223. https://doi.org/10.31015/jaefs.2020.2.12.

JAMA

1.Koç G. Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana. int. j. agric. environ. food sci. 2020;4:216–223.

MLA

Koç, Gökmen. “Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana”. International Journal of Agriculture Environment and Food Sciences, vol. 4, no. 2, June 2020, pp. 216-23, doi:10.31015/jaefs.2020.2.12.

Vancouver

1.Gökmen Koç. Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana. int. j. agric. environ. food sci. 2020 Jun. 1;4(2):216-23. doi:10.31015/jaefs.2020.2.12

Cited By

Potato leafroll virus

CABI Compendium

https://doi.org/10.1079/cabicompendium.42783

Tomato yellow leaf curl virus (leaf curl)

CABI Compendium

https://doi.org/10.1079/cabicompendium.55402

Abstracting & Indexing Services

Google Scholar | Crossref DOI Registry

All content published in this journal is licensed under the Creative Commons Attribution 4.0 International License (CC BY 4.0).
Authors retain copyright of their work and grant the journal a non-exclusive right to publish, reproduce, and distribute the articles within an open-access framework.

Web: dergipark.org.tr/jaefs E-mail: editorialoffice@jaefs.com Phone / WhatsApp: +90 850 309 59 27

Abstract

Preliminarly Survey Results and Phylogenetic Analysis for Tomato Yellow Leaf Curl Virus and Potato Leaf Roll Virus on Tomato Grown in Adana

Abstract

Keywords

Supporting Institution

Thanks

References

Details

Primary Language

Subjects

Journal Section

Authors

Publication Date

Submission Date

Acceptance Date

Published in Issue

DOI

IZ

Cite

Cited By

Potato leafroll virus

Tomato yellow leaf curl virus (leaf curl)

Abstracting & Indexing Services

© International Journal of Agriculture, Environment and Food Sciences