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SARS-CoV-2 Ana Proteazın (Mpro) potansiyel inhibitörleri olarak rutin, luteolin ve mirisetin: Sanal bir tarama çalışması

Yıl 2022, Cilt: 4 Sayı: 2, 171 - 192, 31.12.2022

Öz

COVID-19 pandemisi 17 Kasım 2019'da Çin'de ortaya çıktı. 22 Aralık 2021 itibariyle ilk vaka görüldükten sonra 276.879.062 vaka gözlemlendi ve toplam 5.374.615 ölüm bildirildi (Johns Hopkins Üniversitesi, 2021). COVID-19'un pandemi olarak tanınmasının ardından tüm dünyada aşı geliştirme seferberliği başladı. Aşı geliştirme çalışmaları devam ederken, tedavi için önerilen ancak en etkili sonuçları olmayan bazı ilaçlar var. İlaç tasarımı, geliştirme ve test prosedürleri zaman alıcı olduğundan, mevcut ilaç veri tabanları yardımıyla sanal tarama çalışmaları inisiyatif almakta ve bu noktada zamandan tasarruf sağlamaktadır. Ayrıca, ilaç yeniden kullanım stratejileri, bu tür hastalıklar için yeni potansiyel ajanları zaman açısından kritik bir şekilde tanımlamayı vaat ediyor. Burada, SARS-CoV-2'nin COVID-19 ana proteazlarından (6W63) biri üzerindeki üç flavonoid, rutin, luteolin ve mirisetin'in kenetlenme profillerini ortaya çıkarmak için yapı tabanlı sanal tarama yöntemini rapor ediyoruz.

Destekleyen Kurum

Ege üniversitesi

Kaynakça

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Rutin, luteolin, and myricetin as potential inhibitors of SARS-CoV-2 Main Protease (Mpro): A virtual screening study

Yıl 2022, Cilt: 4 Sayı: 2, 171 - 192, 31.12.2022

Öz

The COVID-19 pandemic appeared in China on November 17, 2019. As of 22 December 2021, after the first case was seen, 276,879,062 cases were observed and 5,374,615 total deaths were reported (Johns Hopkins University, 2021). After the recognition of COVID-19 as pandemic, a mobilization for vaccine development started all over the world. While the vaccine development studies continue, there are some drugs recommended for the treatment but not with the most effective results. Since drug design, development and testing procedures are time consuming, virtual screening studies with the help of existing drug databases take the initiative and save time at this point. Moreover, drug repurposing strategies promise to identify new potential agents for such diseases in a time-critical manner. Here, we report structure-based virtual screening method to reveal the docking profiles of three flavonoids, rutin, luteolin, and myricetin on one of the COVID-19 main protease (6W63) of SARS-CoV-2.

Kaynakça

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  • Potshangbam, A. M., Nongdam, P., Kumar, A. K., & Rathore, R. S. (2021). Phenylbenzopyrone of Flavonoids as a Potential Scaffold to Prevent SARS-CoV-2 Replication by Inhibiting its M-PRO Main Protease. Current Pharmaceutical Biotechnology, 22(15), 2054–2070. Retrieved from https://www.eurekaselect.net/article/113711
  • Prasansuklab, A., Theerasri, A., Rangsinth, P., Sillapachaiyaporn, C., Chuchawankul, S., & Tencomnao, T. (2021). Anti-COVID-19 drug candidates: A review on potential biological activities of natural products in the management of new coronavirus infection. Journal of Traditional and Complementary Medicine, 11(2), 144–157.
  • Puttaswamy, H., Gowtham, H. G., Ojha, M. D., Yadav, A., Choudhir, G., Raguraman, V., … Chauhan, L. (2020). In silico studies evidenced the role of structurally diverse plant secondary metabolites in reducing SARS-CoV-2 pathogenesis. Scientific Reports, 10(1).
  • Rahman, F., Tabrez, S., Ali, R., Alqahtani, A. S., Ahmed, M. Z., & Rub, A. (2021). Molecular docking analysis of rutin reveals possible inhibition of SARS-CoV-2 vital proteins. Journal of Traditional and Complementary Medicine, 11(2), 173–179.
  • Rakshit, M., Muduli, S., Srivastav, P. P., & Mishra, S. (2021). Pomegranate peel polyphenols prophylaxis against SARS-CoV-2 main protease by in-silico docking and molecular dynamics study. Journal of Biomolecular Structure & Dynamics.
  • Rameshkumar, M. R., Indu, P., Arunagirinathan, N., Venkatadri, B., El-Serehy, H. A., & Ahmad, A. (2021). Computational selection of flavonoid compounds as inhibitors against SARS-CoV-2 main protease, RNA-dependent RNA polymerase and spike proteins: A molecular docking study. Saudi Journal of Biological Sciences, 28(1), 448–458. Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7581406/pdf/main.pdf
  • Rehman, M. T., AlAjmi, M. F., & Hussain, A. (2021). Natural Compounds as Inhibitors of SARS-CoV-2 Main Protease (3CLpro): A Mo-lecular Docking and Simulation Approach to Combat COVID-19. Current Pharmaceutical Design, 27(33), 3577–3589. Retrieved from https://www.eurekaselect.net/article/111556
  • Rizzuti, B., Grande, F., Conforti, F., Jimenez-Alesanco, A., Ceballos-Laita, L., Ortega-Alarcon, D., … Velazquez-Campoy, A. (2021). Rutin Is a Low Micromolar Inhibitor of SARS-CoV-2 Main Protease 3CLpro: Implications for Drug Design of Quercetin Analogs. Biomedicines, 9(4).
  • Rottier, P. J. M. (1995). The Coronavirus Membrane Glycoprotein. The Coronaviridae, 115–139. https://doi.org/10.1007/978-1-4899-1531-3_6
  • Rudrapal, M., Issahaku, A. R., Agoni, C., Bendale, A. R., Nagar, A., Soliman, M. E. S., & Lokwani, D. (2021). In silico screening of phytopolyphenolics for the identification of bioactive compounds as novel protease inhibitors effective against SARS-CoV-2. Journal of Biomolecular Structure & Dynamics.
  • Samy, M. N., Attia, E. Z., Shoman, M. E., Khalil, H. E., Sugimoto, S., Matsunami, K., & Fahim, J. R. (2021). Phytochemical investigation of Amphilophium paniculatum; an underexploredBignoniaceae species as a source of SARS-CoV-2 M-pro inhibitory metabolites: Isolation, identification, and molecular docking study. South African Journal of Botany, 141, 421–430.
  • Sen, D., Bhaumik, S., Debnath, P., & Debnath, S. (2021). Potentiality of Moringa oleifera against SARS-CoV-2: identified by a rational computer aided drug design method. Journal of Biomolecular Structure & Dynamics.
  • Shaldam, M. A., Yahya, G., Mohamed, N. H., Abdel-Daim, M. M., & Al Naggar, Y. (2021). In silico screening of potent bioactive compounds from honeybee products against COVID-19 target enzymes. Environmental Science and Pollution Research, 28(30), 40507–40514. Retrieved from https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8088405/pdf/11356_2021_Article_14195.pdf
  • Shu, Y., & McCauley, J. (2017). GISAID: Global initiative on sharing all influenza data – from vision to reality. Eurosurveillance, 22(13), 2–4. https://doi.org/10.2807/1560-7917.ES.2017.22.13.30494
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  • Yosri, N., Abd El-Wahed, A. A., Ghonaim, R., Khattab, O. M., Sabry, A., Ibrahim, M. A. A., … El-Seedi, H. R. (2021). Anti-Viral and Immunomodulatory Properties of Propolis: Chemical Diversity, Pharmacological Properties, Preclinical and Clinical Applications, and In Silico Potential against SARS-CoV-2. Foods, 10(8).
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  • Zaki, A. A., Al-Karmalawy, A. A., El-Amier, Y. A., & Ashour, A. (2020). Molecular docking reveals the potential of Cleome amblyocarpa isolated compounds to inhibit COVID-19 virus main protease. New Journal of Chemistry, 44(39), 16752–16758.
  • Zhang, Y., Yao, Y. F., Yang, Y. F., & Wu, H. Z. (2021). Investigation of Anti-SARS, MERS, and COVID-19 Effect of Jinhua Qinggan Granules Based on a Network Pharmacology and Molecular Docking Approach. Natural Product Communications, 16(5).
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  • Zhu, N., Zhang, D., Wang, W., Li, X., Yang, B., Song, J., … Tan, W. (2020). A Novel Coronavirus from Patients with Pneumonia in China, 2019. New England Journal of Medicine, 382(8), 727–733. https://doi.org/10.1056/nejmoa2001017
  • Zhu, Y., & Xie, D. Y. (2020). Docking Characterization and in vitro Inhibitory Activity of Flavan-3-ols and Dimeric Proanthocyanidins Against the Main Protease Activity of SARS-Cov-2. Frontiers in Plant Science, 11.
Toplam 108 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Atomik, Moleküler ve Optik Fizik, Doğrusal Olmayan Optik ve Spektroskopi
Bölüm Makaleler
Yazarlar

Tayfun Gençsoy 0000-0001-7893-280X

Naim Peker 0000-0002-6446-1258

Hasan Tugra Yavas 0000-0002-6604-8731

Ozan Ünsalan 0000-0001-5736-7530

Erken Görünüm Tarihi 25 Aralık 2022
Yayımlanma Tarihi 31 Aralık 2022
Gönderilme Tarihi 27 Aralık 2021
Kabul Tarihi 3 Eylül 2022
Yayımlandığı Sayı Yıl 2022 Cilt: 4 Sayı: 2

Kaynak Göster

APA Gençsoy, T., Peker, N., Yavas, H. T., Ünsalan, O. (2022). Rutin, luteolin, and myricetin as potential inhibitors of SARS-CoV-2 Main Protease (Mpro): A virtual screening study. Journal of Spectroscopy and Molecular Sciences, 4(2), 171-192.