Sepultariella semiimmersa 'nın Morfolojik ve Moleküler Tanımlaması: Türkiye için Yeni Lokalite Kaydı
Yıl 2024,
, 94 - 102, 14.10.2024
İsmail Acar
,
Halide Karabıyık
,
Gülçin Özcan Ateş
Öz
Sepultariella semi-immersa (Pyronemataceae, Ascomycota), Türkiye’nin Çanakkale Onsekiz Mart Üniversitesi Terzioğlu Kampüsünden Türkiye makrofungal çeşitliliği için yeni lokalite olarak tanımlanmıştır. Bir tür kompeksi oluşturan S. semi-immersa, Sepultariella clade’ı içerisinde yer almaktadır. Çalışmada türe ait detaylı deskripsiyon, coğrafi koordinat, doğal habitatında çekilmiş fotoğralar ve moleküler verilere dayalı olarak yapılan cins içindeki filogenetik pozisyonu verilmiştir. Cins içindeki evrimsel ve filogenetik ilişkinin tespit edilmesinde Dahili kopyalanmış aralayıcı (ITS) bölge dizisi belirleyici olmuştur.
Kaynakça
- Acar, İ., Uzun, Y., Kalmer, A., Dizkırıcı, A. and Öğün, Y. (2021). A new record for Turkish mycobiota from Selim (Kars) district. Mantar Dergisi, 12(1), 65-70.
- Acar, I. (2022). New records from Turkey: Cortinarius barbatus, C. osmophorus, & C. saturninus. Mycotaxon, 136(4): 819-830.
- Acar, İ., Dizkirici, A., Kalmer, A. and Uzun, Y. (2022). Hebeloma bingolense, a new species in section Hebeloma (Basidiomycota) from Turkey. Nova Hedwigia, 114(1-2), 55-68.
- Acar, İ., Kalmer, A. and Dizkirici., A. (2024). Confirmation of Hebeloma salicicola (Basidiomycota) from Türkiye. – Österr. Z. Pilzk, 31: 89–97.
- Akata, I., Şahin, E., Altuntaş, D. and Kabaktepe, Ş. (2021). Two new additions to Turkish Tulostoma. KSU J. Agric Nat., 24 (5): 1104-1110.
- Akata, İ., Kumru, E., Ediş G., Özbey, B.G. and Sahin, E. (2023). Three New records for Turkish Agaricales Inhabiting Ankara University Beşevler 10th Year Campus Area. Kastamonu University Journal of Forestry Faculty, 23(3): 250-263.
- Akata, I., Kumru, E., Sahin, E., Acar, İ. and Kaya, E. (2024). Amanita vidua: A new record for Turkish Amanita Section Phalloideae based on morphological and molecular data. Trakya University Journal of Natural Sciences, 25(1): 97-110.
- Aktaş, S. and Karaselek, M.A. (2019). The taxonomical characterızation of some Helvella and its relatives by morphologıcal and molecular data from Turkey.
- Dizkirici, A. and Acar, İ. (2022). Hymenoscyphus conscriptus & H. fucatus, newly recorded from Turkey. Mycotaxon, 137(3): 555-567.
- Dizkirici, A., Kalmer, A. and Acar, I. (2022). New Turkish records of Hebeloma excedens and H. geminatum, and confirmation of H. celatum. Mycotaxon, 137(1): 123-134.
- Dougoud, R. (2002). Contribution à la connaissance de quelques Discomycètes operculés rares ou méconnus. Fungi non delineati 18: 1-70.
- Eckblad, F.E. (1968). The genera of the operculate Discomycetes. A re-evaluation of their taxonomy, phylogeny and nomenclature. Nytt Magasin for Botanikk, 15 (1-2): 1-191.
- Ekanayaka, A.H., Hyde, K.D., Jones, E.B.G. and Zhao, Q. (2018). Taxonomy and phylogeny of operculate Discomycetes: Pezizomycetes. Fungal Diversity, 90: 161–243.
- Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39: 783–791.
- Hansen, K., Perry, B.A., Dranginis, A.W. and Pfister, D.H. (2013). A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits. Molecular Phylogenetics and Evolution, 67(2): 311-335.
- Karsten, P.A. (1869). Monographia Pezizarum fennicarum. Notiser ur Sallskapets pro Fauna et Flora Fennica Forhandlingar, 10: 99-206.
- Kaya, A. and Uzun, Y. (2015). Six new genus records for Turkish Pezizales from Gaziantep Province. Turkish Journal of Botany, 39(3): 506-511.
- Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution, 33(7), 1870-1874.
- Kutorga, E. (2000). Lietuvos grybai (Mycota Lithuaniae), 3 (5): Ausūniečiai (Pezizales). Vilnius, Botanikos institutas, Vilniaus Universitetas, 276 p.
- Le Gal, M. (1957). Le genre Leucoscypha Boud. Bulletin du Jardin Botanique de l’État de Bruxelles, 27 (4): 719-728.
- Medardi, G. (2006). Ascomiceti d’Italia. Associazione Micologica Bresadola, Trento.
- Perry B.A, Hansen, K. and Pfister, D.H. (2007). A phylogenetic overview of the family Pyronemataceae (Ascomycota, Pezizales). Mycological Research, 111: 549–571.
- Pfister, D.H. and Healy, R. (2021). Pezizomycetes. In: Zaragoza, O. (ed) Encyclopedia of Mycology. vol.1, pp. 295–309. Oxford: Elsevier
- Ribes, M.A. and Pancorbo, F. (2010). Contribucion al conocimiento de la micobiota de las Islas Canarias (Espana) II. Bol. Soc. Micol. Madrid, 34: 235-256.
- Rifai, M.A. (1968). The Australasian Pezizales in the herbarium of the Royal Botanic Gardens Kew. Verhandelingen der Koninklijke Nederlandse Akademie van Wetenschappen, afd. natuurkunde, Sect. 2, 57(3): 1-295.
- Saccardo, P.A. (1877). Patavii, Typis Seminarii, 1877-1882, Michelia, 1(1): 70.
- Saccardo, P.A. (1889). Discomyceteae et Phymatosphaeriaceae. Sylloge Fungorum, 8: 1143 p.
- Sesli, E., Asan A., Selçuk, F. (eds.) Abacı Günyar, Ö., Akata, I., Akgül, H., Aktaş, S., Alkan, S., Allı, H., Aydoğdu, H., Berikten, D., Demirel, K., Demirel, R., Doğan, H.H., Erdoğdu, M., Ergül, C., Eroğlu, G., Giray, G., Halikî Uztan, A., Kabaktepe, Ş., Kadaifçiler, D., Kalyoncu, F., Karaltı, İ., Kaşık, G., Kaya, A., Keleş, A., Kırbağ, S., Kıvanç, M., Ocak, İ., Ökten, S., Özkale, E., Öztürk, C., Sevindik, M., Şen, B., Şen, İ., Türkekul, İ., Ulukapı, M., Uzun, Ya., Uzun, Yu. and Yoltaş, A., The Checklist of Fungi of Turkey, (2020). Ali Nihat Gökyiğit Vakfı Yayını, İstanbul.
- Schoch, C.L., Sung, G.-H., López-Giráldez, F., Townsend, J.P., Miadlikowska, J., Hofstetter, V., Robbertse, B., Matheny, P.B., Kauff, F., Wang, Z., Gueidan, C., Andrie, R.M., Trippe, K., Ciufetti, L.M., Wynns, A., Fraker, E., Hodkinson, B.P., Bonito, G., Groenewald, J.Z., Arzanlou, M., de Hoog, G.S., Crous, P.W., Hewitt, D., Pfister, D.H.,
Peterson, K., Gryzenhout, M., Wingfield, M.J., Aptroot, A., Suh, S.-O., Blackwell, M., Sipman, H., Rogers, J.D., Shoemaker, R.A., Sugiyama, J., Summerbell, R.C., Untereiner, W., Johnston, P.R., Stenroos, S., Zuccaro, A., Dyer, P., Crittenden, P.D., Cole, M.S., Hansen, K., Trappe, J.M., Yahr, R., Lutzoni, F. and Spatafora, J.W., 2009. The Acomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst. Biol., 58: 224–239.
- Spatafora, J.W., Sung, G.-H., Johnson, D., Hesse, C., O’Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Miadlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T., Lucking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., Miller, A.N., Geiser, D.M., Hafellner, J., Hestmark, G., Arnold, A.E., Budel, B., Rauhut, A., Hewitt, D., Untereiner, W.A., Cole, M.S., Scheidegger, C., Schultz, M., Sipman, H. and Schoch, C.L., 2006. A five-gene phylogeny of Pezizomycotina. Mycologia 98: 1018–1028.
- Svrček, M. (1974). New or less known Discomycetes. I. Česká Mykologie, 28(3): 129-137.
- Tamura, K., Stecher, G., Peterson, D., Filipski, A.M. and Kumar, S. (2013). MEGA 6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30(12): 2725–2729.
- Teˇšitelová, T., Teˇšitel, J., Jersáková, J., Rˇ íhová, G. and Selosse, M. (2012). Symbiotic germination capability of four Epipactis species (Orchidaceae) is broader than expected from adult ecology. Am. J. Bot. 99: 1020–1032.
- Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994). Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res, 22: 4673–4680.
- Uzun, Y., Yakar, S., Karacan, İ.H. and Kaya, A. (2018). New additions to the Turkish Pezizales. Turkish Journal of Botany, 42(3): 335-345.
- Van Vooren, N., Lindemann, U. and Healy, R. (2017). Emendation of the genus Tricharina (Pezizales) based on phylogenetic, morphological and ecological data. Ascomycete.org, 9(4): 101-123.
Morphological and Molecular Identification of Sepultariella semi-immersa : New Locality Record for Türkiye
Yıl 2024,
, 94 - 102, 14.10.2024
İsmail Acar
,
Halide Karabıyık
,
Gülçin Özcan Ateş
Öz
Sepultariella semi-immersa (Pyronemataceae, Ascomycota) was identified in a new locality for macrofungal diversity in Türkiye from Çanakkale Onsekiz Mart University Terzioğlu Campus. S. semi-immersa, which constitutes a species comlex, is included in the Sepultariella clade. This study gives a detailed description of the species, geographical coordinates, photographs taken in its natural habitat, and its phylogenetic position in the genus Sepultariella based on molecular data. The Internal transcribed spacer (ITS) region sequence determined the evolutionary and phylogenetic relationship within the genus but S. semi-immersa, which might constitute a species complex.
Kaynakça
- Acar, İ., Uzun, Y., Kalmer, A., Dizkırıcı, A. and Öğün, Y. (2021). A new record for Turkish mycobiota from Selim (Kars) district. Mantar Dergisi, 12(1), 65-70.
- Acar, I. (2022). New records from Turkey: Cortinarius barbatus, C. osmophorus, & C. saturninus. Mycotaxon, 136(4): 819-830.
- Acar, İ., Dizkirici, A., Kalmer, A. and Uzun, Y. (2022). Hebeloma bingolense, a new species in section Hebeloma (Basidiomycota) from Turkey. Nova Hedwigia, 114(1-2), 55-68.
- Acar, İ., Kalmer, A. and Dizkirici., A. (2024). Confirmation of Hebeloma salicicola (Basidiomycota) from Türkiye. – Österr. Z. Pilzk, 31: 89–97.
- Akata, I., Şahin, E., Altuntaş, D. and Kabaktepe, Ş. (2021). Two new additions to Turkish Tulostoma. KSU J. Agric Nat., 24 (5): 1104-1110.
- Akata, İ., Kumru, E., Ediş G., Özbey, B.G. and Sahin, E. (2023). Three New records for Turkish Agaricales Inhabiting Ankara University Beşevler 10th Year Campus Area. Kastamonu University Journal of Forestry Faculty, 23(3): 250-263.
- Akata, I., Kumru, E., Sahin, E., Acar, İ. and Kaya, E. (2024). Amanita vidua: A new record for Turkish Amanita Section Phalloideae based on morphological and molecular data. Trakya University Journal of Natural Sciences, 25(1): 97-110.
- Aktaş, S. and Karaselek, M.A. (2019). The taxonomical characterızation of some Helvella and its relatives by morphologıcal and molecular data from Turkey.
- Dizkirici, A. and Acar, İ. (2022). Hymenoscyphus conscriptus & H. fucatus, newly recorded from Turkey. Mycotaxon, 137(3): 555-567.
- Dizkirici, A., Kalmer, A. and Acar, I. (2022). New Turkish records of Hebeloma excedens and H. geminatum, and confirmation of H. celatum. Mycotaxon, 137(1): 123-134.
- Dougoud, R. (2002). Contribution à la connaissance de quelques Discomycètes operculés rares ou méconnus. Fungi non delineati 18: 1-70.
- Eckblad, F.E. (1968). The genera of the operculate Discomycetes. A re-evaluation of their taxonomy, phylogeny and nomenclature. Nytt Magasin for Botanikk, 15 (1-2): 1-191.
- Ekanayaka, A.H., Hyde, K.D., Jones, E.B.G. and Zhao, Q. (2018). Taxonomy and phylogeny of operculate Discomycetes: Pezizomycetes. Fungal Diversity, 90: 161–243.
- Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39: 783–791.
- Hansen, K., Perry, B.A., Dranginis, A.W. and Pfister, D.H. (2013). A phylogeny of the highly diverse cup-fungus family Pyronemataceae (Pezizomycetes, Ascomycota) clarifies relationships and evolution of selected life history traits. Molecular Phylogenetics and Evolution, 67(2): 311-335.
- Karsten, P.A. (1869). Monographia Pezizarum fennicarum. Notiser ur Sallskapets pro Fauna et Flora Fennica Forhandlingar, 10: 99-206.
- Kaya, A. and Uzun, Y. (2015). Six new genus records for Turkish Pezizales from Gaziantep Province. Turkish Journal of Botany, 39(3): 506-511.
- Kumar, S., Stecher, G. and Tamura, K. (2016). MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Molecular biology and evolution, 33(7), 1870-1874.
- Kutorga, E. (2000). Lietuvos grybai (Mycota Lithuaniae), 3 (5): Ausūniečiai (Pezizales). Vilnius, Botanikos institutas, Vilniaus Universitetas, 276 p.
- Le Gal, M. (1957). Le genre Leucoscypha Boud. Bulletin du Jardin Botanique de l’État de Bruxelles, 27 (4): 719-728.
- Medardi, G. (2006). Ascomiceti d’Italia. Associazione Micologica Bresadola, Trento.
- Perry B.A, Hansen, K. and Pfister, D.H. (2007). A phylogenetic overview of the family Pyronemataceae (Ascomycota, Pezizales). Mycological Research, 111: 549–571.
- Pfister, D.H. and Healy, R. (2021). Pezizomycetes. In: Zaragoza, O. (ed) Encyclopedia of Mycology. vol.1, pp. 295–309. Oxford: Elsevier
- Ribes, M.A. and Pancorbo, F. (2010). Contribucion al conocimiento de la micobiota de las Islas Canarias (Espana) II. Bol. Soc. Micol. Madrid, 34: 235-256.
- Rifai, M.A. (1968). The Australasian Pezizales in the herbarium of the Royal Botanic Gardens Kew. Verhandelingen der Koninklijke Nederlandse Akademie van Wetenschappen, afd. natuurkunde, Sect. 2, 57(3): 1-295.
- Saccardo, P.A. (1877). Patavii, Typis Seminarii, 1877-1882, Michelia, 1(1): 70.
- Saccardo, P.A. (1889). Discomyceteae et Phymatosphaeriaceae. Sylloge Fungorum, 8: 1143 p.
- Sesli, E., Asan A., Selçuk, F. (eds.) Abacı Günyar, Ö., Akata, I., Akgül, H., Aktaş, S., Alkan, S., Allı, H., Aydoğdu, H., Berikten, D., Demirel, K., Demirel, R., Doğan, H.H., Erdoğdu, M., Ergül, C., Eroğlu, G., Giray, G., Halikî Uztan, A., Kabaktepe, Ş., Kadaifçiler, D., Kalyoncu, F., Karaltı, İ., Kaşık, G., Kaya, A., Keleş, A., Kırbağ, S., Kıvanç, M., Ocak, İ., Ökten, S., Özkale, E., Öztürk, C., Sevindik, M., Şen, B., Şen, İ., Türkekul, İ., Ulukapı, M., Uzun, Ya., Uzun, Yu. and Yoltaş, A., The Checklist of Fungi of Turkey, (2020). Ali Nihat Gökyiğit Vakfı Yayını, İstanbul.
- Schoch, C.L., Sung, G.-H., López-Giráldez, F., Townsend, J.P., Miadlikowska, J., Hofstetter, V., Robbertse, B., Matheny, P.B., Kauff, F., Wang, Z., Gueidan, C., Andrie, R.M., Trippe, K., Ciufetti, L.M., Wynns, A., Fraker, E., Hodkinson, B.P., Bonito, G., Groenewald, J.Z., Arzanlou, M., de Hoog, G.S., Crous, P.W., Hewitt, D., Pfister, D.H.,
Peterson, K., Gryzenhout, M., Wingfield, M.J., Aptroot, A., Suh, S.-O., Blackwell, M., Sipman, H., Rogers, J.D., Shoemaker, R.A., Sugiyama, J., Summerbell, R.C., Untereiner, W., Johnston, P.R., Stenroos, S., Zuccaro, A., Dyer, P., Crittenden, P.D., Cole, M.S., Hansen, K., Trappe, J.M., Yahr, R., Lutzoni, F. and Spatafora, J.W., 2009. The Acomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits. Syst. Biol., 58: 224–239.
- Spatafora, J.W., Sung, G.-H., Johnson, D., Hesse, C., O’Rourke, B., Serdani, M., Spotts, R., Lutzoni, F., Hofstetter, V., Miadlikowska, J., Reeb, V., Gueidan, C., Fraker, E., Lumbsch, T., Lucking, R., Schmitt, I., Hosaka, K., Aptroot, A., Roux, C., Miller, A.N., Geiser, D.M., Hafellner, J., Hestmark, G., Arnold, A.E., Budel, B., Rauhut, A., Hewitt, D., Untereiner, W.A., Cole, M.S., Scheidegger, C., Schultz, M., Sipman, H. and Schoch, C.L., 2006. A five-gene phylogeny of Pezizomycotina. Mycologia 98: 1018–1028.
- Svrček, M. (1974). New or less known Discomycetes. I. Česká Mykologie, 28(3): 129-137.
- Tamura, K., Stecher, G., Peterson, D., Filipski, A.M. and Kumar, S. (2013). MEGA 6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30(12): 2725–2729.
- Teˇšitelová, T., Teˇšitel, J., Jersáková, J., Rˇ íhová, G. and Selosse, M. (2012). Symbiotic germination capability of four Epipactis species (Orchidaceae) is broader than expected from adult ecology. Am. J. Bot. 99: 1020–1032.
- Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994). Clustal W improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res, 22: 4673–4680.
- Uzun, Y., Yakar, S., Karacan, İ.H. and Kaya, A. (2018). New additions to the Turkish Pezizales. Turkish Journal of Botany, 42(3): 335-345.
- Van Vooren, N., Lindemann, U. and Healy, R. (2017). Emendation of the genus Tricharina (Pezizales) based on phylogenetic, morphological and ecological data. Ascomycete.org, 9(4): 101-123.