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Mechanisms Effecting Evolution of Plant Pathogenic Fungi

Yıl 2019, Cilt: 10 Sayı: 2, 175 - 189, 30.10.2019

Öz

The number of species of fungi is estimated to be between 2.2 and 3.8
millions. Despite this diversity, only 120,000 species have been identified
currently. Today, some fossils belonging to eukaryotic macro organisms are
thought to be fungi. Studies on eukaryotic microfossils have shown that these
fossils are fungi, but also that the fungi are more ancient than expected.
Analyzing the morphological differences between these fossils and the current
fungi, comparative analysis of genomes and phylogenetic analyzes will provide
an insight into the factors influencing the evolution of fungi. At the same
time, the enzymes contained in the fungi and the phylogenetic analysis of the
genes encoding them can be used to obtain information about the organisms they
feed on, and to determine or predict their relationship with other organisms.
Conducting these studies in a combined way will increase the knowledge
about the evolution of fungi.
More than one factor can influence the evolution of
a pathogen.
At the same time, the effect of these factors,
which cause variation in species, may vary according to pathogen. This review
is written to give information about which factors are effective in the
evolution of plant pathogenic fungi. Consideration of these factors may be
helpful in evaluating the evolutionary processes of fungi and to preventing or slowing
down the formation of aggressive races and controlling of these races in terms
of plant protection.

Kaynakça

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  • Aguileta G., Hood M. E., Refre´gier, G., Giraud, T., Genome evolution in plant pathogenic and symbiotic fungi, In: Advances in botanical research. Vol 49. Kader, J. C. and Delseny, M. (eds), Elsevier, 152-180, USA (2009).
  • Albertin W., Marullo P., Polyploidy in fungi: evolution after whole-genome duplication. Proc. Royal Soc, 279, 2497-2509 (2012).
  • Anonymous., http://www.fungaltaxonomy.org (2015).
  • Badouin H., Gladieux P., Gouzy J., Siguenza S., Aguileta G., Snirc A., Le Prieur S., Jeziorski C., Branca A., Giraud T., Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Mol. Ecol, 26, 2041-2062 (2017).
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  • Burdon J. J., Silk J., Sources and patterns of diversity in plant-pathogenic fungi. Phytopathol, 87 (7) 664-669 (1997).
  • Camacho J. P. M., Sharbel, T. F., Beukeboom L. W., B-chromosome evolution. Trans. Royal Soc. B, 355, 163-178 (2000).
  • Chakraborty S., Datta S., How will plant pathogens adapt to host plant resistance at elevated CO2 under a changing climate?. New Phytologist, 159, 733-742 (2003).
  • Chang Y., Wang S., Sekimoto S., Aerts A. L., Choi C., Clum A., LaButti K. M., Lindquist E. A., Ngan C, Y., Ohm R. A., Salamov A. A., Grigoriev I. V., Spatafora J. W., Berbee M. L., Phylogenomic analyses ındicate that early fungi evolved digesting cell walls of algal ancestors of land plants. Genome. Biol. Evol, 7 (6) 1590-1601 (2015).
  • Croll D., McDonald B. A., The accessory genome as a cradle for adaptive evolution in pathogens. Plos Pathogens, 8 (4) (2012).
  • Crous P. W., Hawksworth D. L., Wingfield M. J., Identifying ve naming plant-pathogenic fungi: past, present, ve future. Annu. Rev. Phytopatho, 53, 247-267 (2015).
  • Coakley S. M., Scherm H., Chakraborty S., Climate change ve plant disease management. Annu. Rev. Phytopatho, 37, 399-426 (1999).
  • Daboussi M. J., Langin T., Transposable elements in the fungal plant pathogen Fusarium oxysporum. Genetica, 93, 49-59 (1994).
  • Daverdin G., Rouxel T., Gout L., Aubertot J. N., Fudal I., Meyer M., Parlange F., Carpezat J., Balesdent M. H., Genome structure ve reproductive behaviour influence the evolutionary potential of a fungal phytopathogen. Plos Pathogens, 8 (11) 1-15 (2012).
  • Del Sorbo G., Scala F., Parella G., Lorito M., Comparini C., Ruocco M., Scala A., Functional expression of the gene cu, encoding the phytotoxic hydrophobin cerato-ulmin, enables Ophiostoma quercus, a nonpathogen on elm, to cause symptoms of Dutch elm disease. Molecu. Plant Microbe Interact., 13, 43-53 (2000).
  • Dong S., Raffaele S., Kamoun S., The two-speed genomes of filamentous pathogens: waltz with plants. Curr. Opin. Genet. Dev, 35, 57-65 (2015).
  • Freeman S., Herron J. C., Evrimsel Analiz. Palme, 838 (2009).
  • Fourie G., Steenkamp E. T., Gordon T. R., Viljoen A., Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups. Appl. Environm. Microbiol, 75 (14) 4770-4781 (2009). Ghini R., Hamada E., Bettiol W., Climate change and plant diseases. Sci. Agri, 65, 98-107 (2008). Gilroy E. M., Breen S., Whisson S. C., Squires J., Hein I., Kaczmarek M., Turnbull D., Boevink P. C., Lokossou A., Cano L. M., Morales J., Avrova A. O., Pritchard L., Randall E., Lees A., Govers F., van West P., Kamoun S., Vleeshouwers V. G., Cooke D. E., Birch P. R. Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist, 191 (3) 763-776 (2011). Hane J. K., Williams A. H., Oliver R. P., Genomic and comparative analysis of the class dothideomycetes, In: Evolution of Fungi and Fungal-Like Organisms (The Mycota 14), Esser, K. (eds), Springer, 205-226 (2011).
  • Hawksworth D. L., Global species numbers of fungi: Are tropical studies ve molecular approaches contributing to a more robust estimate?. Biodivers. Conserv, 21, 2425-2433 (2012).
  • Heckman D. S., Geiser D. M., Eidell B. R., Stauffer R. L., Kardos N. L., Hedges S. B., Molecular evidence for the early colonization of land by fungi and plants. Science, 293, 1129-1133 (2001).
  • Hibbett D. S., Binder M., Bischoff J. F., Blackwell M., Cannon P. F., Eriksson O. E., Huhndorf S., James T., Kirk P. M., Lücking R., Thorsten L. H., Lutzoni F., Matheny P. B., McLaughlin D. J., Powell M. J., Redhead S., Schoch C. L., Spatafora J. W., Stalpers J. A., Vilgalys R., Aime M. C., Aptroot A., Bauer R., Begerow D., Benny G. L., Castlebury L. A., Crous P. W., Dai Y. C., Gams W., Geiser D. M., Griffith G. W., Gueidan C., Hawksworth D. L., Hestmark G., Hosaka K., Humber R. A., Hyde K. D., Ironside J. E., Kõljalg U., Kurtzman C. P., Larsson K. H., Lichtwardt R., Longcore J., Miadlikowska J., Miller A, Moncalvo J. M., Mozley-Standridge S., Oberwinkler F., Parmasto E., Reeb, V., Rogers J. D., Roux C., Ryvarden L., Sampaio J. P, Schüssler A., Sugiyama J., Thorn R. G., Tibell L., Untereine W. A., Walker C., Wang Z., Weir A., Weiss M., White M. M., Winka K., Yao, Y. J., Zhang, N., A higher-level phylogenetic classification of the Fungi. Mycological Research, 111, 509-547 (2007). James T. Y., Kauff F., Schoch C. L., Matheny P. B., Hofstetter V., Cox C., Celio G., Gueidan C., Fraker E., Mia dlikowska J, Lumbsch H. T., Rauhut A., Reeb V., Arnold E. A., Amtoft A., Stajich J. E., Hosaka K., Sung G-H., Johnson D., O’Rourke B, Crockett M., Binder M., Curtis J. M., Slot J. C., Wang Z, Wilson A. W., Schu¨ ßler A, Longcore J. E., O’Donnell K., Mozley-Stveridge S., Porter D., Letcher P. M., Powell M. J., Taylor J. W., White M. M., Griffith G. W., Davies D. R., Humber R. A., Morton J., Sugiyama J., Rossman A. Y., Rogers J. D., Pfister D. H., Hewitt D., Hansen K., Hambleton S., Shoemaker R. A., Kohlmeyer J., Volkmann-Kohlmeyer B, Spotts R. A., Serdani M., Crous P. W., Hughes K. W., Matsuura K., Langer E., Langer G., Untereiner W. A., Lu¨ cking R, Bu¨ del B, Geiser D. M., Aptroot A., Diederich P., Schmitt I., Schultz M., Yahr R., Hibbett D. S., Lutzoni F., McLaughlin D., Spatafora J., Vilgalys R., Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature, 443, 818-822 (2006). Jiménez-Gasco M. M., Navas-Cortés J. A., Jiménez-Díaz R. M., The Fusarium oxysporum f. sp. ciceris/Cicer arietinum pathosystem: a case study of the evolution of plant-pathogenic fungi into races and pathotypes. Int Microbiol, 7 (2) 95-104 (2004).
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Bitki Patojeni Fungusların Evrimini Etkileyen Bazı Faktörler

Yıl 2019, Cilt: 10 Sayı: 2, 175 - 189, 30.10.2019

Öz

Fungusların tür sayısının 2.2 ile 3.8 milyon
arasında olduğu tahmin edilmektedir. Bu çeşitliliğe rağmen günümüzde
tanımlanmış tür sayısı sadece 120.000’dir. Günümüzde ökaryotik makro
organizmalara ait olan bazı fosillerin fungus olabileceği düşünülmektedir.
Ökaryotik mikrofosiller üzerinde yapılan çalışmalar ise bu fosillerin fungus
olduğunu aynı zamanda fungusların tahmin edilenden daha antik canlılar olduğunu
göstermiştir.  Bu fosillerle günümüzdeki
fungusların morfolojik farklılıklarının analiz edilmesi, genomların
karşılaştırmalı analizleri ve filogenetik analizler fungusların evriminde
etkili olan faktörlerin aydınlatılmasını sağlayacaktır. Aynı zamanda
fungusların içerdiği enzimler ve bunları kodlayan genlerin filogenetik
analizleri antik fungusların beslendikleri organizmalarla ilgili bilgi
edinilmesini ve diğer organizmalarla ilişkilerinin belirlenmesi ya da tahmin
edilmesinde kullanılabilmektedir. Bu çalışmaların kombine bir şekilde yapılması
fungusların evrimi hakkındaki bilgi birikiminin artmasını sağlayabilecektir.  Bir patojenin evrimi üzerine birden fazla
faktör etki edebilmektedir. Aynı zamanda, türlerde varyasyona neden olan bu
faktörlerin etkisi patojene göre değişebilmektedir. Bu derleme bitki patojeni
fungusların evriminde hangi faktörlerin etkili olduğuyla ilgili bilgi vermek
amacıyla yazılmıştır. Bu faktörlerin ele alınması fungusların evrimsel
süreçlerinin değerlendirilmesinde, bitki koruma açısından agresif ırkların
oluşmasını engellemede ya da yavaşlatmada ve bu ırklarla mücadelede yol
gösterici olabilir. 

Kaynakça

  • Agrios G., Plant Pathology (5th). Elsevier Academic Press, Amsterdam (2005).
  • Aguileta G., Hood M. E., Refre´gier, G., Giraud, T., Genome evolution in plant pathogenic and symbiotic fungi, In: Advances in botanical research. Vol 49. Kader, J. C. and Delseny, M. (eds), Elsevier, 152-180, USA (2009).
  • Albertin W., Marullo P., Polyploidy in fungi: evolution after whole-genome duplication. Proc. Royal Soc, 279, 2497-2509 (2012).
  • Anonymous., http://www.fungaltaxonomy.org (2015).
  • Badouin H., Gladieux P., Gouzy J., Siguenza S., Aguileta G., Snirc A., Le Prieur S., Jeziorski C., Branca A., Giraud T., Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates. Mol. Ecol, 26, 2041-2062 (2017).
  • Berbee M. L., Taylor J. W., Dating the molecular clock in fungi-how close are we?. Fungal. Biol. Rev, 24, 1-16 (2010).
  • Brasier C. M.. Cooke D. E. L., Duncan J. M., Origin of a new Phytophthora pathogen through interspecific hybridization. Proc. Natl. Acad. Sci, 96 (10) 5878-5883 (1999).
  • Bowen N. J., Jordan I. K., Transposable elements and the evolution of eukaryotic complexity. Curr. Issu. Mol. Biol, 4, 65-76 (2002).
  • Burdon J. J., Silk J., Sources and patterns of diversity in plant-pathogenic fungi. Phytopathol, 87 (7) 664-669 (1997).
  • Camacho J. P. M., Sharbel, T. F., Beukeboom L. W., B-chromosome evolution. Trans. Royal Soc. B, 355, 163-178 (2000).
  • Chakraborty S., Datta S., How will plant pathogens adapt to host plant resistance at elevated CO2 under a changing climate?. New Phytologist, 159, 733-742 (2003).
  • Chang Y., Wang S., Sekimoto S., Aerts A. L., Choi C., Clum A., LaButti K. M., Lindquist E. A., Ngan C, Y., Ohm R. A., Salamov A. A., Grigoriev I. V., Spatafora J. W., Berbee M. L., Phylogenomic analyses ındicate that early fungi evolved digesting cell walls of algal ancestors of land plants. Genome. Biol. Evol, 7 (6) 1590-1601 (2015).
  • Croll D., McDonald B. A., The accessory genome as a cradle for adaptive evolution in pathogens. Plos Pathogens, 8 (4) (2012).
  • Crous P. W., Hawksworth D. L., Wingfield M. J., Identifying ve naming plant-pathogenic fungi: past, present, ve future. Annu. Rev. Phytopatho, 53, 247-267 (2015).
  • Coakley S. M., Scherm H., Chakraborty S., Climate change ve plant disease management. Annu. Rev. Phytopatho, 37, 399-426 (1999).
  • Daboussi M. J., Langin T., Transposable elements in the fungal plant pathogen Fusarium oxysporum. Genetica, 93, 49-59 (1994).
  • Daverdin G., Rouxel T., Gout L., Aubertot J. N., Fudal I., Meyer M., Parlange F., Carpezat J., Balesdent M. H., Genome structure ve reproductive behaviour influence the evolutionary potential of a fungal phytopathogen. Plos Pathogens, 8 (11) 1-15 (2012).
  • Del Sorbo G., Scala F., Parella G., Lorito M., Comparini C., Ruocco M., Scala A., Functional expression of the gene cu, encoding the phytotoxic hydrophobin cerato-ulmin, enables Ophiostoma quercus, a nonpathogen on elm, to cause symptoms of Dutch elm disease. Molecu. Plant Microbe Interact., 13, 43-53 (2000).
  • Dong S., Raffaele S., Kamoun S., The two-speed genomes of filamentous pathogens: waltz with plants. Curr. Opin. Genet. Dev, 35, 57-65 (2015).
  • Freeman S., Herron J. C., Evrimsel Analiz. Palme, 838 (2009).
  • Fourie G., Steenkamp E. T., Gordon T. R., Viljoen A., Evolutionary relationships among the Fusarium oxysporum f. sp. cubense vegetative compatibility groups. Appl. Environm. Microbiol, 75 (14) 4770-4781 (2009). Ghini R., Hamada E., Bettiol W., Climate change and plant diseases. Sci. Agri, 65, 98-107 (2008). Gilroy E. M., Breen S., Whisson S. C., Squires J., Hein I., Kaczmarek M., Turnbull D., Boevink P. C., Lokossou A., Cano L. M., Morales J., Avrova A. O., Pritchard L., Randall E., Lees A., Govers F., van West P., Kamoun S., Vleeshouwers V. G., Cooke D. E., Birch P. R. Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist, 191 (3) 763-776 (2011). Hane J. K., Williams A. H., Oliver R. P., Genomic and comparative analysis of the class dothideomycetes, In: Evolution of Fungi and Fungal-Like Organisms (The Mycota 14), Esser, K. (eds), Springer, 205-226 (2011).
  • Hawksworth D. L., Global species numbers of fungi: Are tropical studies ve molecular approaches contributing to a more robust estimate?. Biodivers. Conserv, 21, 2425-2433 (2012).
  • Heckman D. S., Geiser D. M., Eidell B. R., Stauffer R. L., Kardos N. L., Hedges S. B., Molecular evidence for the early colonization of land by fungi and plants. Science, 293, 1129-1133 (2001).
  • Hibbett D. S., Binder M., Bischoff J. F., Blackwell M., Cannon P. F., Eriksson O. E., Huhndorf S., James T., Kirk P. M., Lücking R., Thorsten L. H., Lutzoni F., Matheny P. B., McLaughlin D. J., Powell M. J., Redhead S., Schoch C. L., Spatafora J. W., Stalpers J. A., Vilgalys R., Aime M. C., Aptroot A., Bauer R., Begerow D., Benny G. L., Castlebury L. A., Crous P. W., Dai Y. C., Gams W., Geiser D. M., Griffith G. W., Gueidan C., Hawksworth D. L., Hestmark G., Hosaka K., Humber R. A., Hyde K. D., Ironside J. E., Kõljalg U., Kurtzman C. P., Larsson K. H., Lichtwardt R., Longcore J., Miadlikowska J., Miller A, Moncalvo J. M., Mozley-Standridge S., Oberwinkler F., Parmasto E., Reeb, V., Rogers J. D., Roux C., Ryvarden L., Sampaio J. P, Schüssler A., Sugiyama J., Thorn R. G., Tibell L., Untereine W. A., Walker C., Wang Z., Weir A., Weiss M., White M. M., Winka K., Yao, Y. J., Zhang, N., A higher-level phylogenetic classification of the Fungi. Mycological Research, 111, 509-547 (2007). James T. Y., Kauff F., Schoch C. L., Matheny P. B., Hofstetter V., Cox C., Celio G., Gueidan C., Fraker E., Mia dlikowska J, Lumbsch H. T., Rauhut A., Reeb V., Arnold E. A., Amtoft A., Stajich J. E., Hosaka K., Sung G-H., Johnson D., O’Rourke B, Crockett M., Binder M., Curtis J. M., Slot J. C., Wang Z, Wilson A. W., Schu¨ ßler A, Longcore J. E., O’Donnell K., Mozley-Stveridge S., Porter D., Letcher P. M., Powell M. J., Taylor J. W., White M. M., Griffith G. W., Davies D. R., Humber R. A., Morton J., Sugiyama J., Rossman A. Y., Rogers J. D., Pfister D. H., Hewitt D., Hansen K., Hambleton S., Shoemaker R. A., Kohlmeyer J., Volkmann-Kohlmeyer B, Spotts R. A., Serdani M., Crous P. W., Hughes K. W., Matsuura K., Langer E., Langer G., Untereiner W. A., Lu¨ cking R, Bu¨ del B, Geiser D. M., Aptroot A., Diederich P., Schmitt I., Schultz M., Yahr R., Hibbett D. S., Lutzoni F., McLaughlin D., Spatafora J., Vilgalys R., Reconstructing the early evolution of Fungi using a six-gene phylogeny. Nature, 443, 818-822 (2006). Jiménez-Gasco M. M., Navas-Cortés J. A., Jiménez-Díaz R. M., The Fusarium oxysporum f. sp. ciceris/Cicer arietinum pathosystem: a case study of the evolution of plant-pathogenic fungi into races and pathotypes. Int Microbiol, 7 (2) 95-104 (2004).
  • Johnson L. J., Johnson R. D., Akamatsu H., Salamiah A., Otani H., Kohmoto K., Kodama M., Spontaneous loss of a conditionally dispensable chromosome from the Alternaria alternata apple pathotype leads to loss of toxin production and pathogenicity. Currents Genets, 40 (1), 65-72 (2001).
  • Jones M. D. M., Richards T. A., Environmental DNA analysis and the expansion of the fungal tree of life, In: Evolution of Fungi and Fungal-Like Organisms (The Mycota 14), Esser, K. (eds), Springer, 37-50, Heidelberg, Germany (2011).
  • Kirk P. M., Cannon P. F., Minter D. W., Stalpers J. A., (eds). Ainsworth and Bisby's Dictionary of the Fungi 10th edition. Cromwell Press, Trowbridge, CABI Europe-UK (2008).
  • Liu T., Wan A., Liu D., Chen, X., Changes of races and virulence genes in Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen, in the United States from 1968 to 2009. Plant Disease, 101(8) 1522-1532 (2017).
  • Lo Presti L., Lanver D., Schweizer G., Tanaka S., Liang L., Tollot M., Zuccaro A., Reissmann S., Kahmann R., Fungal effectors ve plant susceptibility. Annu. Rev. Plant Biol, 66, 513-545 (2015).
  • Ma L. J., Van Der Does, H. C., Borkovich K. A., Coleman J. J., Daboussi M. J., Di Pietro A., Dufresne M., Freitag M., Grabherr M., Henrissat B., Houterman P. M., Kang S., Shim W. B., Woloshuk C., Xie X., Xu J. R., Antoniw J., Baker S. E., Bluhm B. H., Breakspear A., Brown D. W., Butchko R. A. E., Chapman S., Coulson R., Coutinho P. M., Danchin E. G. J., Diener A., Gale L. R., Gardiner D. M., Goff S., Kosack K. E. H., Hilburn K., Van A. H., Jonkers W., Kazan K., Kodira C. D., Koehrsen M., Kumar L., Lee Y. H., Li L., Manners J. M., Saavedra D. M., Mukherjee M., Park G., Park J., Park S. Y., Proctor R. H., Regev A., Roldan M. C. R., Sain D., Sakthikumar S., Sykes S., Schwartz D. C., Turgeon B. G., Wapinski I., Yoder O., Young S., Zeng Q., Zhou S., Galagan J., Cuomo C. A., Kistler H. C., Rep M., Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature, 464, 367-373 (2010). Manning V. A., Pveelova I., Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication ve the ımpact of repeat elements on pathogenicity ve population divergence. G3 (Bethesda), 3 (1) 41-63 (2013).
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Toplam 53 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Bölüm DERLEME MAKALE
Yazarlar

Esra Gül 0000-0002-8001-3412

Yayımlanma Tarihi 30 Ekim 2019
Yayımlandığı Sayı Yıl 2019 Cilt: 10 Sayı: 2

Kaynak Göster

APA Gül, E. (2019). Bitki Patojeni Fungusların Evrimini Etkileyen Bazı Faktörler. Mantar Dergisi, 10(2), 175-189.

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