Araştırma Makalesi

BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE

Cilt: 8 Sayı: 2 30 Aralık 2022
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BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE

Öz

Small angle X-ray Scattering (SAXS) is a method for determining basic structural characteristics such as the size, shape, and surface of particles. SAXS data can be used to generate low resolution models of biomolecules faster than any other conventional experimental structural biology tool. SAXS data is mostly collected in synchrotron facilities to obtain the best scattering data possible however home source SAXS devices can also generate valuable data when properly optimized. Here, we examined sample data collection and optimization at home source SAXS beamline in terms of the concentration, purity, and duration of data acquisition. We validated that high concentration, monodisperse and ultra pure protein samples obtained by size exclusion chromatography are necessary for generating viable SAXS data using a home source beamline. At least one hour is required to generate a feasible model from SAXS data, although longer data collection times do not always translate to higher resolutions. We show that with small optimizations during data collection and analysis SAXS can characterize properties such as oligomerization, molecular mass, and overall shape of particles in solution under physiological conditions.

Anahtar Kelimeler

Destekleyen Kurum

TÜBİTAK

Proje Numarası

120Z594, 221S535, 122Z747

Teşekkür

We are greatful to Prof. Ziarek at Indiana University-Bloomington for constructive feedback and we apprecıate Ziarek Juniors for their understanding. CD acknowledges support from TÜBİTAK (Project No: 120Z594, 221S535, 122Z747). The authors acknowledge the use of the services and facilities of n2STAR-Koç University Nanofabrication and Nanocharacterization Center for Scientific and Technological Advanced Research.

Kaynakça

  1. Kane, P.P., Kissel, L., Pratt, R.H. and Roy, S.C., “Elastic scattering of γ-rays and X-rays by atoms”, Physics Reports, Vol. No. 140(2), 75–159, 1986.
  2. Kane, P.P., “Inelastic scattering of X-rays and gamma rays by inner shell electrons”, Physics Reports, Vol. No. 218(2) 67–139, 1992.
  3. Chavas, L.M.G., “Small Angle X-Ray and Neutron Scattering from Solutions of Biological Macromolecules”, Acta Crystallographica Section D: Biological Crystallography, Vol. No. 70(4), 1175-1176, 2014.
  4. Makowski, L., “Characterization of proteins with wide-angle X-ray solution scattering (WAXS)”, Journal of Structural and Functional Genomics, Vol. No. 11(1), 9–19, 2010.
  5. Das, R. and Doniach, S., (Pecora, R. and Borsali, R.), Structural Studies of Proteins and Nucleic Acids in Solution Using Small Angle X-Ray Scattering (SAXS), Soft Matter Characterization, 1083-1108, 2008.
  6. Pauw, B.R., “Everything Saxs: Small-angle scattering pattern collection and correction”, Journal of Physics: Condensed Matter, Vol. No. 25(38), 383201, 2013.
  7. Skou, S., Gillilan, R.E. and Ando, N., “Synchrotron-based small-angle X-ray scattering of proteins in solution”, Nature Protocols, Vol. No. 9(7), 1727-1739, 2014.
  8. Grant, T.D., Luft, J.R., Wolfley, J.R., Tsuruta, H., Martel, A., Montelione, G.T. and Snell, E.H., “Small angle X-ray scattering as a complementary tool for high-throughput structural studies”, Biopolymers, Vol. No. 95(8), 517-530, 2011.

Ayrıntılar

Birincil Dil

İngilizce

Konular

-

Bölüm

Araştırma Makalesi

Yayımlanma Tarihi

30 Aralık 2022

Gönderilme Tarihi

13 Eylül 2022

Kabul Tarihi

2 Aralık 2022

Yayımlandığı Sayı

Yıl 2022 Cilt: 8 Sayı: 2

Kaynak Göster

APA
Göcenler, O., Yenici, C. M., Kahraman, K., Büyükdağ, C., & Dağ, Ç. (2022). BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE. Mugla Journal of Science and Technology, 8(2), 60-69. https://doi.org/10.22531/muglajsci.1174474
AMA
1.Göcenler O, Yenici CM, Kahraman K, Büyükdağ C, Dağ Ç. BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE. MJST. 2022;8(2):60-69. doi:10.22531/muglajsci.1174474
Chicago
Göcenler, Oktay, Cansu Müşerref Yenici, Kerem Kahraman, Cengizhan Büyükdağ, ve Çağdaş Dağ. 2022. “BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE”. Mugla Journal of Science and Technology 8 (2): 60-69. https://doi.org/10.22531/muglajsci.1174474.
EndNote
Göcenler O, Yenici CM, Kahraman K, Büyükdağ C, Dağ Ç (01 Aralık 2022) BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE. Mugla Journal of Science and Technology 8 2 60–69.
IEEE
[1]O. Göcenler, C. M. Yenici, K. Kahraman, C. Büyükdağ, ve Ç. Dağ, “BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE”, MJST, c. 8, sy 2, ss. 60–69, Ara. 2022, doi: 10.22531/muglajsci.1174474.
ISNAD
Göcenler, Oktay - Yenici, Cansu Müşerref - Kahraman, Kerem - Büyükdağ, Cengizhan - Dağ, Çağdaş. “BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE”. Mugla Journal of Science and Technology 8/2 (01 Aralık 2022): 60-69. https://doi.org/10.22531/muglajsci.1174474.
JAMA
1.Göcenler O, Yenici CM, Kahraman K, Büyükdağ C, Dağ Ç. BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE. MJST. 2022;8:60–69.
MLA
Göcenler, Oktay, vd. “BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE”. Mugla Journal of Science and Technology, c. 8, sy 2, Aralık 2022, ss. 60-69, doi:10.22531/muglajsci.1174474.
Vancouver
1.Oktay Göcenler, Cansu Müşerref Yenici, Kerem Kahraman, Cengizhan Büyükdağ, Çağdaş Dağ. BIOMOLECULAR SOLUTION X-RAY SCATTERING AT n2STAR BEAMLINE. MJST. 01 Aralık 2022;8(2):60-9. doi:10.22531/muglajsci.1174474

Cited By

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