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Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey

Yıl 2013, Cilt: 13 Sayı: 2, - , 01.04.2013

Yılmaz Çiftci Oğuzhan Eroğlu Şirin Firidin

https://doi.org/10.4194/1303-2712-v13_2_11

Öz

It has been assumed that sturgeons originated in the Tethys Sea, and the Black Sea is their most important diversification center. Hence Turkey has had a significant place throughout history. Although there are some genetic studies about sturgeon species that inhabit the Black Sea, these studies have not included samples from Turkey. In this study, the phylogenetic relationship, cladistic positions, and genetic variations were determined from the Cyt-b (1141bp) mtDNA of 3 sturgeon species (n = 28), collected from Turkish coast of the Black Sea between 2005 and 2007. Nineteen haplotypes, and haplotype diversity ranging from 81.8% to 96.4%, were detected from Cyt-b sequences. Studied A+T rates were found between 52.6 and 53.8% for all species. Ti/Tv rates were estimated for each species: A. gueldenstaedtii (9:1), A. stellatus (7:2), and H. huso (6:0). Nucleotide diversity and nucleotide differences calculated for three species varied from 0.1670.378% and 1.89-4.2, respectively. Genetic distances were calculated (1.258-5.288%). Each species was separated by phylogenetic reconstruction with a high bootstrap value (100%). All A. gueldenstaedtii samples replaced in the Black Sea Lineage Group and were separated into 2 clades (A and B). Similarly, A. stellatus samples were separated into 2 clades, but H. huso samples were not separated.

Anahtar Kelimeler

Sturgeon A. stellatus A. gueldenstaedtii H. huso Turkey Black Sea mtDNA Cyt-b sequence analysis phylogenetics. Karadeniz’in Türkiye Kıyılarında Dağılım Gösteren Üç Mersin Balığı Türünün (Acipenser stellatus Acipenser gueldensta

Kaynakça

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  • Apostolidis, A.P. Triantaphyllidis, C., Kouvatsi, A. and Economidis, P. S. 1997. Mitochondrial DNA Sequence Variation and Phylogeography Among Salmo truta L. (Greek Brown Trout) Populations. Mol. Ecol., 6: 531-542. doi: 10.1046/j.1365294X.1997.d01-176.x
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Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey

Yıl 2013, Cilt: 13 Sayı: 2, - , 01.04.2013

Yılmaz Çiftci Oğuzhan Eroğlu Şirin Firidin

https://doi.org/10.4194/1303-2712-v13_2_11

Öz

Mersin balıklarının Tethis Denizi kökenli olduğu ve farklılaşma merkezinin Karadeniz olduğu dü şünüldüğünde Türkiye çok önemli bir yere sahiptir. Karadeniz’deki mersin balığı türleri hakkında yapılmış çalışmalar bulunmasına rağmen Türkiye kıyılarından örnekleme yapılmamıştır. 2005-2007 yılları arasında Türkiye kıyılarından örneklenen 3 türe ait (Acipenser stellatus, A. gueldenstaedtii, H. huso) 28 örnekte Cyt-b geni (1141bp) sekans verilerinden genetik mesafeler ve filogenetik dendogramlar oluşturulmuş ve kladistik analizler yapılmıştır. Cyt-b geninde 19 haplotip ve %81,8-96,4 arasında değişen haplotip çeşitliliği belirlenmiştir. A+T oranı tüm türler için %52,6 ile 53,8 arasında bulunmuştur. Ti/Tv oranı A. gueldenstaedtii’de (9:1), A. stellatus’ta (7:2) ve Huso huso için (6:0) olarak bulunmuştur. Nükleotid çeşitlili ği ve nükleotid farklılığının sırasıyla %0,167-%0,378 ve 1,89–4,2 arasında değiştiği belirlenmiştir. Türler arası mesafe Kimura-2 parametresine göre hesaplanmıştır (%1,258–5,288). Filogenetik ağaçlar sonucunda %100’lük seç-bağla değeri ile türler ayrılmıştır. A. gueldenstaedtii örneklerinin hepsi Karadeniz soy grubu içerisinde yer aldığı ve 2 farklı gruba (A ve B) ayrıldığı belirlenmiştir. Benzer olarak A. stellatus örneklerinin de 2 gruba ayrıldığı tespit edilmiştir. Buna karşın, H. huso örneklerinde ayrılma görülmemiştir.

Anahtar Kelimeler

Mersin Balığı A. stellatus A. gueldenstaedtii Huso huso Türkiye Karadeniz mtDNA S i t o k r o m b sekans analizi filogenetik

Kaynakça

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  • Almodovar, A. Machordom, A. and Suarez, J. 2000. Preliminary Results from Characterization of The Iberian Peninsula Sturgeon Based on Analysis of the mtDNA Cytochrome b. Boletín Instituto Español De Oceanografia, 16: 17–27.
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  • Bernatchez, L. and Danzmann, R.G. 1993. Congruence in Control region Sequence and Restriction-Site Variation in Mitochondrial DNA of Brook Charr (Salvelinus fontinalis Mitchill). Mol. Biol. Evol., 10: 1002-1014.
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  • Birstein, V. J., Doukakis, P., Sorkin, B. and Desalle, R. 1998b. Population Aggregation Analysis of Three Caviar-Producing Species of Sturgeons and Implications for the Species Identification of Black Caviar. Cons. Biol, 12: 766-775. doi: 10.1111/j.1523171998.97081.x
  • Birstein, V. J. and Doukakis, P. 2000. Molecular analysis of Acipenser sturio L., 1758 and Acipenser oxyrinchus Mitchill, 1815: A review. Bol. Inst. Esp. Oceanogr. 16(1-4): 61-73.
  • Birstein, V. J., Doukakis, P. and Desalle, R. 2000. Polyphyly of mtDNA lineages in the Russian sturgeon, Acipenser gueldenstaedtii: Forensic and Evolutionary implications. Cons. Gen., 1: 81-88. doi: 1023/A:1010141906100
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  • Ludwig, A., Debus, L. and Jenneckens, I. 2002. A molecular approach for trading control of black caviar. International Review of Hydrobiology, 87: 661-6
  • Ludwig, A., Sebastian, L., Lutz, D., Ralf, R. 2002. First evidence of hybridization between endangered sterlets (Acipenser ruthenus) and exotic Siberian sturgeons (Acipenser baerii) in the Danube River Arne. Biol Invasions, 11: 753-760. doi: 10.1007/s10530-0089289-z
  • Ludwig, A. 2006. A sturgeon view on conservation genetics. European Journal of Wildlife Research. 52:3- doi:10.1007/s10344-005-0006-2
  • Mayden, R.L. and Kuhajda, B.R. 1996. Systematics Taxonomy and Conservation Status of the Endagered Alabama Sturgeon Scaphirhynchus suttkusi Williams and Clemmer (Actinopterygii, Acipenseridae). Copeia 2: 241-273. doi:10.2307/1446842
  • Meyer, A. 1993. Evolution of Mitochondrial DNA in Fishes. Bioc. and Mol. Biol. Fish., 2: 1-38.
  • Moghim, M., Heist, E.J., Tan S. G. , Pourkazemi, M., Siraj, S.S., Panandam, J.M., Pourgholam, R., Kor, D., Laloei, F. and Taghavi, M. J. 2012. Isolation and characterization of microsatellite loci in the Persiansturgeon (Acipenser persicus, Borodine, 1897) and cross-speciesamplification in four commercial sturgeons from the Caspian Sea. Iranian Journal of Fisheries Sciences 11(3): 548-558.
  • Mugue, N., Barmintseva, A. E., Rastorguev, S. M., Mugue, V. N. and Barmintsev, V. A. 2006. Sturgeon mtDNA control region polymorphism and its suitability for species identification. 2ndWorkshop. Identification of Acipenseriformes Species in Trade. Berlin, 29th Sep. - 1st Oct. 2006: 9-10.
  • Nuin, P. 2008. MrMTgui: cross-interface for ModelTest and Mr Modeltest; “http://www.genedrift.org/mtgui.php”. Nylander, J.A.A. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
  • Orti, G., Bell, M.A., Reimchen, T.E. and Meyer, A. 1994. Global survey of mitochondrial DNA sequences in the threespine stickleback: evidence for recent migrations. Evolution, 48: 608-622. doi: 10.2307/2410473.
  • Peng, Z., Ludwig, A., Wang, D., Diogo, R., Wie, Q. and He, S. 2007. Age and Biogeography of Major Clades in Sturgeons and Paddlefishes (Pisces: Acipenseriformes). Mol. Phyl. Evol., 42: 854-862. doi:1016/j.ympev.2006.09.008
  • Posada, D. and Crandall, K. A. 1998. Modeltest: Testing The Model of DNA Substitution. Bioinformatics, 14: 817- 818. doi:10.1093/bioinformatics/14.9.817
  • Pourkazemi, M. 1996. Molecular and biochemical genetic analysis of sturgeon stocks from the South Caspian Sea. Ph.D. thesis. University of Wales, Swansea.
  • Rehbein, H. 1997. Fischartbestimmung von Caviar durch Protein- und DNA-Analyse. Informationen der Fischwirtschaft, 44: 27-30.
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  • Vlasenko, A. D., Pavlov, A.V., Sokolov, L. I. and Vasıl'ev, V. P. 1989. Acipenser gueldenstaedtii Brandt 1833. In: The Freshwater Fishes of Europe (Holcík J. Hrsg.), AULA-Verlag Gmbh, Wiesbaden: 294-344.
  • Voynova, N.V., Mirzoyan, A.V, Timoshkina, N. N and Rynza, E. T. 2008. Occurrence of Non-notive Specimens of Caspian Origin within the Sea of Azov population of the Russian sturgeon (Acipenser gueldenstaedtii). J. App. Icht., 24: 50doi:1111/j.1439-0426.2008.01090.x
  • Williot, P., Arlati, G., Chebanov, M., Gulyas, T., Kasimov, R., Kirschbaum, F., Patriche, N., Pavlovskaya, L. P., Poliakova, L., Pourkazemi, M., Kim, Y., Zhuang, P. and Zholdasova, I. M. 2002. Status and management of Eurasian sturgeon: an overview. International Reviews in Hydrobiology, 87(5-6): 483-506.
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  • Zhu, B., Zhou, F., Cao, H., Shao, Z., Zhao, N., May, B., and Chang, J. 2002. Analysis of genetic variation in the Chinese sturgeon, Acipenser sinensis: estimating the contribution of artificially produced larvae in a wild population. J. App. Icht., 18: 301–306. doi:1046/j.1439-0426.2002.00379.x
  • Zuckerkandl, E. and Pauling, L.1965. Evolutionary divergence and convergence in proteins, Evolving Genes and Proteins, edited by V. Bryson and H.J. Vogel. Academic Press, New York, 97-166 pp.
Toplam 73 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Bölüm Makaleler
Yazarlar

Yılmaz Çiftci Bu kişi benim

Oğuzhan Eroğlu Bu kişi benim

Şirin Firidin Bu kişi benim

Yayımlanma Tarihi 1 Nisan 2013
Yayımlandığı Sayı Yıl 2013 Cilt: 13 Sayı: 2

Kaynak Göster

APA Çiftci, Y., Eroğlu, O., & Firidin, Ş. (2013). Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey. Turkish Journal of Fisheries and Aquatic Sciences, 13(2). https://doi.org/10.4194/1303-2712-v13_2_11
AMA Çiftci Y, Eroğlu O, Firidin Ş. Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey. Turkish Journal of Fisheries and Aquatic Sciences. Nisan 2013;13(2). doi:10.4194/1303-2712-v13_2_11
Chicago Çiftci, Yılmaz, Oğuzhan Eroğlu, ve Şirin Firidin. “Mitochondrial Cytochrome B Sequence Variation in Three Sturgeon Species (A. Stellatus Pallas, 1771, A. Gueldenstaedtii Brandt, 1833, H. Huso Linnaeus, 1758) from the Black Sea Coasts of Turkey”. Turkish Journal of Fisheries and Aquatic Sciences 13, sy. 2 (Nisan 2013). https://doi.org/10.4194/1303-2712-v13_2_11.
EndNote Çiftci Y, Eroğlu O, Firidin Ş (01 Nisan 2013) Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey. Turkish Journal of Fisheries and Aquatic Sciences 13 2
IEEE Y. Çiftci, O. Eroğlu, ve Ş. Firidin, “Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey”, Turkish Journal of Fisheries and Aquatic Sciences, c. 13, sy. 2, 2013, doi: 10.4194/1303-2712-v13_2_11.
ISNAD Çiftci, Yılmaz vd. “Mitochondrial Cytochrome B Sequence Variation in Three Sturgeon Species (A. Stellatus Pallas, 1771, A. Gueldenstaedtii Brandt, 1833, H. Huso Linnaeus, 1758) from the Black Sea Coasts of Turkey”. Turkish Journal of Fisheries and Aquatic Sciences 13/2 (Nisan 2013). https://doi.org/10.4194/1303-2712-v13_2_11.
JAMA Çiftci Y, Eroğlu O, Firidin Ş. Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey. Turkish Journal of Fisheries and Aquatic Sciences. 2013;13. doi:10.4194/1303-2712-v13_2_11.
MLA Çiftci, Yılmaz vd. “Mitochondrial Cytochrome B Sequence Variation in Three Sturgeon Species (A. Stellatus Pallas, 1771, A. Gueldenstaedtii Brandt, 1833, H. Huso Linnaeus, 1758) from the Black Sea Coasts of Turkey”. Turkish Journal of Fisheries and Aquatic Sciences, c. 13, sy. 2, 2013, doi:10.4194/1303-2712-v13_2_11.
Vancouver Çiftci Y, Eroğlu O, Firidin Ş. Mitochondrial Cytochrome b Sequence Variation in Three Sturgeon Species (A. stellatus Pallas, 1771, A. gueldenstaedtii Brandt, 1833, H. huso Linnaeus, 1758) from the Black Sea Coasts of Turkey. Turkish Journal of Fisheries and Aquatic Sciences. 2013;13(2).