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Anadolu’da Yetişen Gundelia (Asteraceae) Taksonlarının ITS Filogenisi ve Moleküler Tarihlendirilmesi

Year 2017, Volume: 27 Issue: 2, 74 - 77, 15.12.2017

Abstract

Flora
kitaplarına göre Gundelia L.
monofiletik bir cins olarak bilinmektedir. Gundelia tournefortii L. cinsin
tek türü olarak bilinmektedir. Çalışmamızda ITS bölgesine dayalı filogenetik
analiz ve moleküler tarihleme yapmak için yeni tanımlanan türleri de kullandık.
Bunlar: Gundelia aragatsi Vitek, Fayvush, Tamanyan &
Gemeinholzer,
Gundelia dersim Vitek, Yüce & Ergin, Gundelia munzuriensis Vitek, Yüce & Ergin, Gundelia
vitekii
Armağan, Gundelia komagenensis Fırat,
Gundelia
colemerikensis
Fırat, Gundelia cilicica Fırat ve Gundelia anatolica Fırat.
Adı geçen yeni türler Yürkiye’den arazi çalışmaları yaparak toplanmış ve bizim
toplamalarımızın yanısıra
G. tournefortii türüne ait daha
önceki çalışmalarda ortaya çıkmış ITS dizileri de kullanılmıştır. Filogenetik ağaca göre, G.
anatolica
tüm Gundelia örneklerinden farklıdır. Daha
önceki çalışmalarda toplanmış bazı G. tournefortii örnekleri G.
cilicica
, G. dersim ve G.
colemerikensis
ile birlikte
kümelenmiştir. G. munzurensis G.
vitekii
ile grup
oluşturmuştur. Gundelia komagenensis ve G.
aragatsi
örnekleri birbirine en yakın gruplanmışlardır. Moleküler
tarihlendirmeye göre Gundelia cinsinin ayrılma zamanı
14.1 milyon yıl öncesine tarihlenmektedir.

References

  • Anonymous. 2016. Molecular evolution, phylogenetics and epidemiology. http://tree.bio.ed.ac.uk/software/figtree.
  • Avetisian, V. E. 1995. Gundelieae. In: A. L. Takhtajan (Ed.). Flora Armenii 9. Koeltz Scientific Books, Havlíčkův Brod. pp. 212-216.
  • Drummond, A. J., M. A. Suchard, D. Xie, & A. Rambaut. 2012. Bayesian Phylogenetics with BEAUti and the BEAST 1.7. MolecularBiology and Evolution 29: 1969-1973.
  • Feinbrun-Dothan, N. 1978. Flora Palaestina, 3. The Israel Academy of Sciences and Humanities, Jerusalem, 481 pp.
  • Firat, M. 2016. Four new species of Gundelia L. (Asteraceae) from Anatolia: G. komagenensis, G. colemerikensis, G. cilicica and G. anatolica. Vameda Ofset Press, Van, 32 pp.
  • Firat, M. 2017a. Gundelia rosea (Asteraceae), a new record for the Flora of Turkey with contributions to its systematics. Acta Biologica Turcica 30 (2): 31‒35.
  • Firat, M. 2017b. Gundelia mesopotamica (Asteraceae), a new lactiferous species from Mardin (Turkey). Acta Biologica Turcica 30 (3): 64-69.
  • Hall T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp., Ser. 41: 95- 98.
  • Karis P. O., P. Eldenäs, and M. Källersjö. 2001. New evidence for systematic position of Gundelia L. With notes on delimitation of Arctoteae (Asteraceae). Taxon, 50: 105-114.
  • Kupicha, F. K. 1875. Gundelia. In: P. H. Davis (Ed.). Flora of Turkey 5. University Press, Edinburgh, pp. 325-326. Nikitin, V. V. 1960. Gundelia L. In: B. K. Schischkin (Ed.). Flora Turkmenii 7. Akademiia nauk Turkmenskoĭ SSR, Institut Botaniki, Ashkhabad, p. 141.
  • Rambaut, A., and A. J. Drummond. 2007. Tracer, version 1.4. Available from http:// beast.bio.ed.ac.uk/Tracer.
  • Rechinger, K. H. 1989. Gundelia. In: K. H. Rechinger (Ed.). Flora Iranica 164. Akademische Druck- und Verlagsanstalt, Graz, pp. 107-109.
  • Sofieva, R. M. 1961. Gundelia L. In: I. I. Karjagin (Ed.). Flora Azerbajdžana 8. Azerbaijan National Academy of Sciences Press, Baku, pp. 347-348.
  • Thiers, B. 2016. Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih/
  • Tremetsberger, K., Gemeinholzer, B., Zetzsche, H., Blackmore, S., Kilian, N., & Talavera, S. (2013). Divergence time estimation in Cichorieae (Asteraceae) using a fossil-calibrated relaxed molecular clock. Organisms Diversity and Evolution, 13 (1): 1-13.
  • Vasilchenko, I. T. 1961. Gundelia L. In: V. L. Komarov (Ed.). Flora SSSR, 26. Nauka Publishers, Moscow & Leningrad, p. 862.
  • Vitek, E., G. Fayvush, K. Tamanyan, and B. Gemeinholzer. 2010. New taxa of Gundelia (Compositae) in Armenia. Annalen des Naturhistorischen Museums Wien, Serie B 111: 85-99.
  • Warwick, S. I., Al-Shehbaz, I. A., Sauder, C. A., Murray, D. F., Mummenhoff, K. 2004. Phylogeny of Smelowskia and related genera (Brassicaceae) based on nuclear ITS DNA and chloroplast trnL intron DNA sequences. Annals of the Missouri Botanical Garden 91: 99–123.
  • White, T. J. T, Bruns, S. L., Taylor, J. W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. and White, T. J. (Ed.). PCR Protocols: A Guide to Methods and Applications, Academic Press, Inc., New York. pp. 315–322.

ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia

Year 2017, Volume: 27 Issue: 2, 74 - 77, 15.12.2017

Abstract

Gundelia L. is known to be a monotypic genus according to the
flora books. Gundelia tournefortii L. was the only species of the genus Gundelia L. In our research we used the
recently introduced species: Gundelia aragatsi Vitek, Fayvush,
Tamanyan & Gemeinholzer,
Gundelia dersim Vitek, Yüce & Ergin, Gundelia munzuriensis Vitek, Yüce & Ergin, Gundelia
vitekii
Armağan, Gundelia komagenensis Fırat,
Gundelia
colemerikensis
Fırat, Gundelia cilicica Fırat and Gundelia anatolica Firat, in order to reconstruct a phylogeny inference
and molecular dating by using ITS region. The mentioned species were collected
from Turkey
and beside our collections, the ITS sequences belonging to G.
tournefortii
accessions of former studies were used in our research.
According to the phylogeny inference, G. anatolica was different from
all Gundelia accessions. Some G.
tournefortii
accessions belonging to former studies grouped with G.
cilicica
, G. dersim and G.
colemerikensis
, G. munzurensis clustered with G.
vitekii
. Gundelia komagenensis and G.
aragatsi
accessions were grouped as close relatives. According to
the molecular dating the distinction of the genus Gundelia from the
relative genera was around 14.1
million years ago (mya).

References

  • Anonymous. 2016. Molecular evolution, phylogenetics and epidemiology. http://tree.bio.ed.ac.uk/software/figtree.
  • Avetisian, V. E. 1995. Gundelieae. In: A. L. Takhtajan (Ed.). Flora Armenii 9. Koeltz Scientific Books, Havlíčkův Brod. pp. 212-216.
  • Drummond, A. J., M. A. Suchard, D. Xie, & A. Rambaut. 2012. Bayesian Phylogenetics with BEAUti and the BEAST 1.7. MolecularBiology and Evolution 29: 1969-1973.
  • Feinbrun-Dothan, N. 1978. Flora Palaestina, 3. The Israel Academy of Sciences and Humanities, Jerusalem, 481 pp.
  • Firat, M. 2016. Four new species of Gundelia L. (Asteraceae) from Anatolia: G. komagenensis, G. colemerikensis, G. cilicica and G. anatolica. Vameda Ofset Press, Van, 32 pp.
  • Firat, M. 2017a. Gundelia rosea (Asteraceae), a new record for the Flora of Turkey with contributions to its systematics. Acta Biologica Turcica 30 (2): 31‒35.
  • Firat, M. 2017b. Gundelia mesopotamica (Asteraceae), a new lactiferous species from Mardin (Turkey). Acta Biologica Turcica 30 (3): 64-69.
  • Hall T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp., Ser. 41: 95- 98.
  • Karis P. O., P. Eldenäs, and M. Källersjö. 2001. New evidence for systematic position of Gundelia L. With notes on delimitation of Arctoteae (Asteraceae). Taxon, 50: 105-114.
  • Kupicha, F. K. 1875. Gundelia. In: P. H. Davis (Ed.). Flora of Turkey 5. University Press, Edinburgh, pp. 325-326. Nikitin, V. V. 1960. Gundelia L. In: B. K. Schischkin (Ed.). Flora Turkmenii 7. Akademiia nauk Turkmenskoĭ SSR, Institut Botaniki, Ashkhabad, p. 141.
  • Rambaut, A., and A. J. Drummond. 2007. Tracer, version 1.4. Available from http:// beast.bio.ed.ac.uk/Tracer.
  • Rechinger, K. H. 1989. Gundelia. In: K. H. Rechinger (Ed.). Flora Iranica 164. Akademische Druck- und Verlagsanstalt, Graz, pp. 107-109.
  • Sofieva, R. M. 1961. Gundelia L. In: I. I. Karjagin (Ed.). Flora Azerbajdžana 8. Azerbaijan National Academy of Sciences Press, Baku, pp. 347-348.
  • Thiers, B. 2016. Index Herbariorum: A Global Directory of Public Herbaria and Associated Staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih/
  • Tremetsberger, K., Gemeinholzer, B., Zetzsche, H., Blackmore, S., Kilian, N., & Talavera, S. (2013). Divergence time estimation in Cichorieae (Asteraceae) using a fossil-calibrated relaxed molecular clock. Organisms Diversity and Evolution, 13 (1): 1-13.
  • Vasilchenko, I. T. 1961. Gundelia L. In: V. L. Komarov (Ed.). Flora SSSR, 26. Nauka Publishers, Moscow & Leningrad, p. 862.
  • Vitek, E., G. Fayvush, K. Tamanyan, and B. Gemeinholzer. 2010. New taxa of Gundelia (Compositae) in Armenia. Annalen des Naturhistorischen Museums Wien, Serie B 111: 85-99.
  • Warwick, S. I., Al-Shehbaz, I. A., Sauder, C. A., Murray, D. F., Mummenhoff, K. 2004. Phylogeny of Smelowskia and related genera (Brassicaceae) based on nuclear ITS DNA and chloroplast trnL intron DNA sequences. Annals of the Missouri Botanical Garden 91: 99–123.
  • White, T. J. T, Bruns, S. L., Taylor, J. W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M. A., Gelfand, D. H., Sninsky, J. J. and White, T. J. (Ed.). PCR Protocols: A Guide to Methods and Applications, Academic Press, Inc., New York. pp. 315–322.
There are 19 citations in total.

Details

Primary Language English
Journal Section Makaleler
Authors

Burcu Tarıkahya Hacıoglu This is me

Mehmet Fırat This is me

Publication Date December 15, 2017
Submission Date July 28, 2017
Published in Issue Year 2017 Volume: 27 Issue: 2

Cite

APA Tarıkahya Hacıoglu, B., & Fırat, M. (2017). ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia. ANADOLU Ege Tarımsal Araştırma Enstitüsü Dergisi, 27(2), 74-77.
AMA Tarıkahya Hacıoglu B, Fırat M. ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia. ANADOLU. December 2017;27(2):74-77.
Chicago Tarıkahya Hacıoglu, Burcu, and Mehmet Fırat. “ITS Phylogeny and Molecular Dating of Some Gundelia (Asteraceae) of Anatolia”. ANADOLU Ege Tarımsal Araştırma Enstitüsü Dergisi 27, no. 2 (December 2017): 74-77.
EndNote Tarıkahya Hacıoglu B, Fırat M (December 1, 2017) ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia. ANADOLU Ege Tarımsal Araştırma Enstitüsü Dergisi 27 2 74–77.
IEEE B. Tarıkahya Hacıoglu and M. Fırat, “ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia”, ANADOLU, vol. 27, no. 2, pp. 74–77, 2017.
ISNAD Tarıkahya Hacıoglu, Burcu - Fırat, Mehmet. “ITS Phylogeny and Molecular Dating of Some Gundelia (Asteraceae) of Anatolia”. ANADOLU Ege Tarımsal Araştırma Enstitüsü Dergisi 27/2 (December 2017), 74-77.
JAMA Tarıkahya Hacıoglu B, Fırat M. ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia. ANADOLU. 2017;27:74–77.
MLA Tarıkahya Hacıoglu, Burcu and Mehmet Fırat. “ITS Phylogeny and Molecular Dating of Some Gundelia (Asteraceae) of Anatolia”. ANADOLU Ege Tarımsal Araştırma Enstitüsü Dergisi, vol. 27, no. 2, 2017, pp. 74-77.
Vancouver Tarıkahya Hacıoglu B, Fırat M. ITS Phylogeny and Molecular Dating of some Gundelia (Asteraceae) of Anatolia. ANADOLU. 2017;27(2):74-7.
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