Genome-Wide Analysis and Characterization of the AHL Gene Family in Common Beans (Phaseolus vulgaris L.)

Year 2024, Volume: 17 Issue: 1, 147 - 163, 28.03.2024

Yaren Bozkurt , Merve Yüce , Esra Yaprak , Ayşe Gül Kasapoğlu , Emre İlhan , Murat Turan , Murat Aydın , Ertan Yıldırım

https://doi.org/10.18185/erzifbed.1375233

Abstract

Küçük bir DNA bağlayıcı protein motifi olan AT-kanca motifi nükleer lokalize ailesi (AHL), bir transkripsiyon faktörü olarak görev yapar ve tüm düzenli dikot ve monokot kara bitkilerinde bulunur. AHL, bitki büyüme ve gelişme süreçlerini ve çevresel streslere tepki mekanizmasını etkileyen bir transkripsiyon faktörüdür. P. vulgaris genomunda in silico araçları kullanılarak 41 Pvul-AHL gen ailesi tanımlandı. Pvul-AHL proteinlerinin amino asit uzunlukları 167 ile 422 arasında değişmektedir. Bu gen ailesinin molekül ağırlıkları 18,19 kDa ile 45,12 kDa arasında değişmektedir. AHL proteinlerinin izoelektrik noktaları (pI) 4,5 ile 10,03 arasında değişir. Pvul-AHL genleri fasulyenin 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 ve 11 numaralı kromozomlarına yayılmış olup, en fazla sayıda gen 6 ve 8 numaralı kromozomlarda bulunmaktadır. AHL gen ailesinin fasulyede oynadığı biyolojik rolleri incelemek için çok önemli bir çerçeve. Gelecekteki fonksiyonel çalışmalar, bu araştırmadan elde edilen bilgiler sonucunda fasulyedeki AHL genlerinin nasıl çalıştığını daha iyi anlayabilecektir.

Keywords

AT-hook motif nuclear-localized family, PPC domain, in silico analysis, transcription factor

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