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β-laktam anti-biyotiklerin (penisilin, floksasilin ve ampisilin) kaliks[4]aren üzerine adsorpsiyonunun ve tespitinin yoğunluk fonksiyonel teorisi çalışması

Year 2025, Volume: 15 Issue: 4, 1112 - 1124, 15.12.2025
https://doi.org/10.17714/gumusfenbil.1752525

Abstract

Bu çalışmada, üç β-laktam antibiyotiğe karşı bir kaliksaren makrosiklinin adsorpsiyon ve sensör davranışı yoğunluk fonksiyonel teorisi (DFT) ile araştırılmıştır. Tüm hesaplamalar, B3LYP hibrit fonksiyoneli ve 6-31G(d,p) temel seti kullanılarak yürütülmüştür. Simülasyon sonuçları, kaliks[4]aren iskeletinin yalnızca floksasiline karşı belirgin bir sensör yanıtı gösterdiğini ortaya koymuştur; sensör tepki faktörü, ampisilin ve penisilin için elde edilen değerlere kıyasla yaklaşık altı mertebe büyüktür. Ayrıca, sınır orbitallerinin analizi, floksasilin bağlanmasıyla HOMO-LUMO aralığında %16,4’lük bir daralma meydana geldiğini ve bu bozulmanın elektronik durum yoğunluğu (DOS) profilinde açıkça gözlemlenebildiğini göstermektedir. Bu bulgular birlikte değerlendirildiğinde, kaliks[4]aren bileşiğinin ortam koşullarında floksasilin için uygulanabilir bir elektronik sensör olduğunu göstermektedir.

References

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  • Becke, A. D. (1988). Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38, 3098. https://doi.org/10.1103/PhysRevA.38.3098
  • Demir, S., & Fellah, M. F. (2020). A DFT study on Pt doped (4,0) SWCNT: CO adsorption and sensing. Applied Surface Science, 504. https://doi.org/10.1016/j.apsusc.2019.144141
  • Eno, E. A., Louis, H., Unimuke, T. O., Gber, T. E., Mbonu, I. J., Ndubisi, C. J., & Adalikwu, S. A. (2022). Reactivity, stability, and thermodynamics of para-methylpyridinium-based ionic liquids: Insight from DFT, NCI, and QTAIM. Journal of Ionic Liquids, 2, 100030. https://doi.org/10.1016/j.jil.2022.100030
  • Fellah, M. F., & Onal, I. (2013). A DFT study on the [VO]1+–ZSM-5 cluster: direct methanol oxidation to formaldehyde by N2O. Physical Chemistry Chemical Physics, 15(33), 13969-13977. https://doi.org/10.1039/C3CP51637G
  • Fellah, M. F. (2019). Pt doped (8,0) single wall carbon nanotube as hydrogen sensor: A density functional theory study. International Journal of Hydrogen Energy 44(49), 27010-27021. https://doi.org/10.1016/j.ijhydene.2019.08.169
  • Foresman, J. B., & Frisch, A. (Eds). (1996). Exploring Chemistry with Electronic Structure Methods (2nd ed.). Gaussian Inc., Pittsburgh.
  • Frisch, M. J., et al. (2013). Gaussian 09, Revision D.01, Gaussian, Inc., Wallingford CT.
  • Hokmabadi, F., Zadmard, R., Jalali, M. R., & Abaee, M. S. (2022). Synthesis and characterization of a new reusable calix[4]arene-bonded silica gel sorbent for antidiabetic drugs. RSC Advances, 12, 25123-25132. https://doi.org/10.1039/D2RA04530C
  • Khan, M. S., & Khan, M. S. (2012). Comparative theoretical study of iron and magnesium incorporated porphyrin induced carbon nanotubes and their interaction with hydrogen molecule. Physica E: Low-dimensional Systems and Nanostructures, 44, 1857-1861. https://doi.org/10.1016/j.physe.2012.05.010
  • Kobko, N., & Dannenberg, J. (2001). Effect of basis set superposition error (BSSE) upon ab initio calculations of organic transition states. Journal of Physical Chemistry A 105(10), 1944-50. https://doi.org/10.1021/jp001970b
  • Lee, C., Yang, W., & Parr, R. G. (1988). Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785. https://doi.org/10.1103/PhysRevB.37.785
  • Lefebvre, C., Rubez, G., Khartabil, H., Boisson, J. C., Contreras-Garcia, J., Hénon, E. (2017). Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density. Physical Chemistry Chemical Physics, 19, 17928-17936. https://doi.org/10.1039/C7CP02110K
  • Li, L., & Zhao, J. (2020). Defected boron nitride nanosheet as an electronic sensor for 4-aminophenol: A density functional theory study. Journal of Molecular Liquids, 306. https://doi.org/10.1016/j.molliq.2020.112926
  • Li, X., Yin, Z., Zhai, Y., Kang, W., Shi, H., & Li, Z. (2020). Magnetic solid-phase extraction of four β-lactams using polypyrrole-coated magnetic nanoparticles from water samples by micellar electrokinetic capillary chromatography analysis. Journal of Chromatography A, 1610, 460541. https://doi.org/10.1016/j.chroma.2019.460541
  • Li, Y., Shi, M., Xia, M., & Wang, F. (2021). The enhanced adsorption of ampicillin and amoxicillin on modified montmorillonite with dodecyl dimethyl benzyl ammonium chloride: experimental study and density functional theory calculation. Advanced Powder Technology, 32(10), 3465-3475. https://doi.org/10.1016/j.apt.2021.08.001
  • Lu, T., Chen, & F. (2012). Multiwfn: A multifunctional wavefunction analyzer. Journal of computational chemistry, 33, 580-592. https://doi.org/10.1002/jcc.22885
  • Mishal, B. H., Das, S., Mahajan, V. N., Dharne, M. S., Joshi, R. S., & Giri, A. P. (2024). An adsorption based downstream processing approach for penicillin v from a penicillium chrysogenum bioncl I22 culture filtrate. ACS Omega, 9(24), 25859–25869. https://doi.org/10.1021/acsomega.4c00251
  • O’Boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2007). cclib: A library for package-independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Pearson, R. G. (2005). Chemical hardness and density functional theory. Journal of Chemical Sciences, 117, 369-377. https://doi.org/10.1007/BF02708340
  • Peng, S., Cho, K., Qi, P., & Dai, H. (2004). Ab initio study of CNT NO2 gas sensor. Chemical Physics Letters, 387(4-6), 271-276. https://doi.org/10.1016/j.cplett.2004.02.026
  • Sundaram, S. M., Gurusamy, A., & Kumarasamy, M. (2024). Green synthesis of biochar from miscanthus sinensis plant and characterized by the adsorption of antibiotics biochar from aqueous solution. Iranian Journal of Chemistry and Chemical Engineering, 43(2), 610-620. https://doi.org/10.30492/ijcce.2024.562763.5613
  • Tri, N. N., Ho, D. Q., Carvalho, A. J. P., Nguyen, M. T., & Trung, N. T. (2021). Insights into adsorptive interactions between antibiotic molecules and rutile-TiO2 (110) surface. Surface Science, 703, 121723. https://doi.org/10.1016/j.susc.2020.121723
  • Wang, Q., Sun, Y., Zhao, S., Bai, C., Cong, Z., Dong, Y., & Wang, T. (2023). Metallo-β-lactamases immobilized by magnetic zeolitic imidazolate frameworks-8 for degradation of β-lactam antibiotics in an aqueous environment. RSC Advances, 13, 34884-34890. https://doi.org/10.1039/D3RA05973A
  • Woodward, Z., Brooks, P., Smith, B. M., Wallis, M., & Ogbourne, S. M. (2018). Adsorption and leachable contamination of flucloxacillin, cyclosporin and amiodarone following delivery through an intravenous administration set. Pharmaceutical Research, 35(121). https://doi.org/10.1007/s11095-018-2409-2
  • Yuksel, N., Köse, A., & Fellah, M. F. (2020). A Density Functional Theory study of molecular hydrogen adsorption on Mg site in OFF type zeolite cluster. International Journal of Hydrogen Energy, 45(60), 34983-34992. https://doi.org/10.1016/j.ijhydene.2020.02.110
  • Yuksel, N., Köse, A., & Fellah, M. F. (2021). The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing. Journal of Inclusion Phenomena and Macrocyclic Chemistry, 101, 77-89. https://doi.org/10.1007/s10847-021-01087-1

Density functional theory study of β-lactam anti-biotics (penicillin, floxacillin and ampicillin) detection and adsorption onto calix[4]arene

Year 2025, Volume: 15 Issue: 4, 1112 - 1124, 15.12.2025
https://doi.org/10.17714/gumusfenbil.1752525

Abstract

In this work, the adsorption and sensing behavior of a calixarene macrocycle toward three β-lactam anti-biotics was probed by density functional theory (DFT). All calculations were carried out with the B3LYP hybrid functional using the 6-31G(d,p) basis set. The simulations demonstrate that the calix[4]arene scaffold exhibits a pronounced sensing response exclusively for floxacillin: its sensor response factor is roughly six orders of magnitude greater than those obtained for ampicillin and penicillin. Additionally, analysis of frontier orbitals shows a 16.4% contraction of the HOMO–LUMO gap upon floxacillin binding, a perturbation that is visually evident in the density of states profile. Taken together, these findings establish calix[4]arene as a viable electronic sensor for floxacillin under ambient conditions.

References

  • Al-Tawarh, W. M., Altarawneh, R. M., Al-Trawneh, S. A., Alshahateet, S. F., & Al-Taweel, S. (2023). An effective calix[4]arene-based adsorbent for tetracycline removal from water systems: Kinetic, isotherm, and thermodynamic studies. Journal of Chemical Research. https://doi.org/10.1177/17475198231187600
  • Becke, A. D. (1988). Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38, 3098. https://doi.org/10.1103/PhysRevA.38.3098
  • Demir, S., & Fellah, M. F. (2020). A DFT study on Pt doped (4,0) SWCNT: CO adsorption and sensing. Applied Surface Science, 504. https://doi.org/10.1016/j.apsusc.2019.144141
  • Eno, E. A., Louis, H., Unimuke, T. O., Gber, T. E., Mbonu, I. J., Ndubisi, C. J., & Adalikwu, S. A. (2022). Reactivity, stability, and thermodynamics of para-methylpyridinium-based ionic liquids: Insight from DFT, NCI, and QTAIM. Journal of Ionic Liquids, 2, 100030. https://doi.org/10.1016/j.jil.2022.100030
  • Fellah, M. F., & Onal, I. (2013). A DFT study on the [VO]1+–ZSM-5 cluster: direct methanol oxidation to formaldehyde by N2O. Physical Chemistry Chemical Physics, 15(33), 13969-13977. https://doi.org/10.1039/C3CP51637G
  • Fellah, M. F. (2019). Pt doped (8,0) single wall carbon nanotube as hydrogen sensor: A density functional theory study. International Journal of Hydrogen Energy 44(49), 27010-27021. https://doi.org/10.1016/j.ijhydene.2019.08.169
  • Foresman, J. B., & Frisch, A. (Eds). (1996). Exploring Chemistry with Electronic Structure Methods (2nd ed.). Gaussian Inc., Pittsburgh.
  • Frisch, M. J., et al. (2013). Gaussian 09, Revision D.01, Gaussian, Inc., Wallingford CT.
  • Hokmabadi, F., Zadmard, R., Jalali, M. R., & Abaee, M. S. (2022). Synthesis and characterization of a new reusable calix[4]arene-bonded silica gel sorbent for antidiabetic drugs. RSC Advances, 12, 25123-25132. https://doi.org/10.1039/D2RA04530C
  • Khan, M. S., & Khan, M. S. (2012). Comparative theoretical study of iron and magnesium incorporated porphyrin induced carbon nanotubes and their interaction with hydrogen molecule. Physica E: Low-dimensional Systems and Nanostructures, 44, 1857-1861. https://doi.org/10.1016/j.physe.2012.05.010
  • Kobko, N., & Dannenberg, J. (2001). Effect of basis set superposition error (BSSE) upon ab initio calculations of organic transition states. Journal of Physical Chemistry A 105(10), 1944-50. https://doi.org/10.1021/jp001970b
  • Lee, C., Yang, W., & Parr, R. G. (1988). Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785. https://doi.org/10.1103/PhysRevB.37.785
  • Lefebvre, C., Rubez, G., Khartabil, H., Boisson, J. C., Contreras-Garcia, J., Hénon, E. (2017). Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density. Physical Chemistry Chemical Physics, 19, 17928-17936. https://doi.org/10.1039/C7CP02110K
  • Li, L., & Zhao, J. (2020). Defected boron nitride nanosheet as an electronic sensor for 4-aminophenol: A density functional theory study. Journal of Molecular Liquids, 306. https://doi.org/10.1016/j.molliq.2020.112926
  • Li, X., Yin, Z., Zhai, Y., Kang, W., Shi, H., & Li, Z. (2020). Magnetic solid-phase extraction of four β-lactams using polypyrrole-coated magnetic nanoparticles from water samples by micellar electrokinetic capillary chromatography analysis. Journal of Chromatography A, 1610, 460541. https://doi.org/10.1016/j.chroma.2019.460541
  • Li, Y., Shi, M., Xia, M., & Wang, F. (2021). The enhanced adsorption of ampicillin and amoxicillin on modified montmorillonite with dodecyl dimethyl benzyl ammonium chloride: experimental study and density functional theory calculation. Advanced Powder Technology, 32(10), 3465-3475. https://doi.org/10.1016/j.apt.2021.08.001
  • Lu, T., Chen, & F. (2012). Multiwfn: A multifunctional wavefunction analyzer. Journal of computational chemistry, 33, 580-592. https://doi.org/10.1002/jcc.22885
  • Mishal, B. H., Das, S., Mahajan, V. N., Dharne, M. S., Joshi, R. S., & Giri, A. P. (2024). An adsorption based downstream processing approach for penicillin v from a penicillium chrysogenum bioncl I22 culture filtrate. ACS Omega, 9(24), 25859–25869. https://doi.org/10.1021/acsomega.4c00251
  • O’Boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2007). cclib: A library for package-independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Pearson, R. G. (2005). Chemical hardness and density functional theory. Journal of Chemical Sciences, 117, 369-377. https://doi.org/10.1007/BF02708340
  • Peng, S., Cho, K., Qi, P., & Dai, H. (2004). Ab initio study of CNT NO2 gas sensor. Chemical Physics Letters, 387(4-6), 271-276. https://doi.org/10.1016/j.cplett.2004.02.026
  • Sundaram, S. M., Gurusamy, A., & Kumarasamy, M. (2024). Green synthesis of biochar from miscanthus sinensis plant and characterized by the adsorption of antibiotics biochar from aqueous solution. Iranian Journal of Chemistry and Chemical Engineering, 43(2), 610-620. https://doi.org/10.30492/ijcce.2024.562763.5613
  • Tri, N. N., Ho, D. Q., Carvalho, A. J. P., Nguyen, M. T., & Trung, N. T. (2021). Insights into adsorptive interactions between antibiotic molecules and rutile-TiO2 (110) surface. Surface Science, 703, 121723. https://doi.org/10.1016/j.susc.2020.121723
  • Wang, Q., Sun, Y., Zhao, S., Bai, C., Cong, Z., Dong, Y., & Wang, T. (2023). Metallo-β-lactamases immobilized by magnetic zeolitic imidazolate frameworks-8 for degradation of β-lactam antibiotics in an aqueous environment. RSC Advances, 13, 34884-34890. https://doi.org/10.1039/D3RA05973A
  • Woodward, Z., Brooks, P., Smith, B. M., Wallis, M., & Ogbourne, S. M. (2018). Adsorption and leachable contamination of flucloxacillin, cyclosporin and amiodarone following delivery through an intravenous administration set. Pharmaceutical Research, 35(121). https://doi.org/10.1007/s11095-018-2409-2
  • Yuksel, N., Köse, A., & Fellah, M. F. (2020). A Density Functional Theory study of molecular hydrogen adsorption on Mg site in OFF type zeolite cluster. International Journal of Hydrogen Energy, 45(60), 34983-34992. https://doi.org/10.1016/j.ijhydene.2020.02.110
  • Yuksel, N., Köse, A., & Fellah, M. F. (2021). The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing. Journal of Inclusion Phenomena and Macrocyclic Chemistry, 101, 77-89. https://doi.org/10.1007/s10847-021-01087-1
There are 27 citations in total.

Details

Primary Language English
Subjects Environmental Biogeochemistry, Sensor Technology, Supramolecular Chemistry, Computational Chemistry, Environmental and Sustainable Processes
Journal Section Research Article
Authors

Numan Yüksel 0000-0003-1268-5775

Submission Date July 28, 2025
Acceptance Date November 17, 2025
Publication Date December 15, 2025
Published in Issue Year 2025 Volume: 15 Issue: 4

Cite

APA Yüksel, N. (2025). Density functional theory study of β-lactam anti-biotics (penicillin, floxacillin and ampicillin) detection and adsorption onto calix[4]arene. Gümüşhane Üniversitesi Fen Bilimleri Dergisi, 15(4), 1112-1124. https://doi.org/10.17714/gumusfenbil.1752525