Araştırma Makalesi
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β-laktam anti-biyotiklerin (penisilin, floksasilin ve ampisilin) kaliks[4]aren üzerine adsorpsiyonunun ve tespitinin yoğunluk fonksiyonel teorisi çalışması

Yıl 2025, Cilt: 15 Sayı: 4, 1112 - 1124, 15.12.2025
https://doi.org/10.17714/gumusfenbil.1752525

Öz

Bu çalışmada, üç β-laktam antibiyotiğe karşı bir kaliksaren makrosiklinin adsorpsiyon ve sensör davranışı yoğunluk fonksiyonel teorisi (DFT) ile araştırılmıştır. Tüm hesaplamalar, B3LYP hibrit fonksiyoneli ve 6-31G(d,p) temel seti kullanılarak yürütülmüştür. Simülasyon sonuçları, kaliks[4]aren iskeletinin yalnızca floksasiline karşı belirgin bir sensör yanıtı gösterdiğini ortaya koymuştur; sensör tepki faktörü, ampisilin ve penisilin için elde edilen değerlere kıyasla yaklaşık altı mertebe büyüktür. Ayrıca, sınır orbitallerinin analizi, floksasilin bağlanmasıyla HOMO-LUMO aralığında %16,4’lük bir daralma meydana geldiğini ve bu bozulmanın elektronik durum yoğunluğu (DOS) profilinde açıkça gözlemlenebildiğini göstermektedir. Bu bulgular birlikte değerlendirildiğinde, kaliks[4]aren bileşiğinin ortam koşullarında floksasilin için uygulanabilir bir elektronik sensör olduğunu göstermektedir.

Kaynakça

  • Al-Tawarh, W. M., Altarawneh, R. M., Al-Trawneh, S. A., Alshahateet, S. F., & Al-Taweel, S. (2023). An effective calix[4]arene-based adsorbent for tetracycline removal from water systems: Kinetic, isotherm, and thermodynamic studies. Journal of Chemical Research. https://doi.org/10.1177/17475198231187600
  • Becke, A. D. (1988). Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38, 3098. https://doi.org/10.1103/PhysRevA.38.3098
  • Demir, S., & Fellah, M. F. (2020). A DFT study on Pt doped (4,0) SWCNT: CO adsorption and sensing. Applied Surface Science, 504. https://doi.org/10.1016/j.apsusc.2019.144141
  • Eno, E. A., Louis, H., Unimuke, T. O., Gber, T. E., Mbonu, I. J., Ndubisi, C. J., & Adalikwu, S. A. (2022). Reactivity, stability, and thermodynamics of para-methylpyridinium-based ionic liquids: Insight from DFT, NCI, and QTAIM. Journal of Ionic Liquids, 2, 100030. https://doi.org/10.1016/j.jil.2022.100030
  • Fellah, M. F., & Onal, I. (2013). A DFT study on the [VO]1+–ZSM-5 cluster: direct methanol oxidation to formaldehyde by N2O. Physical Chemistry Chemical Physics, 15(33), 13969-13977. https://doi.org/10.1039/C3CP51637G
  • Fellah, M. F. (2019). Pt doped (8,0) single wall carbon nanotube as hydrogen sensor: A density functional theory study. International Journal of Hydrogen Energy 44(49), 27010-27021. https://doi.org/10.1016/j.ijhydene.2019.08.169
  • Foresman, J. B., & Frisch, A. (Eds). (1996). Exploring Chemistry with Electronic Structure Methods (2nd ed.). Gaussian Inc., Pittsburgh.
  • Frisch, M. J., et al. (2013). Gaussian 09, Revision D.01, Gaussian, Inc., Wallingford CT.
  • Hokmabadi, F., Zadmard, R., Jalali, M. R., & Abaee, M. S. (2022). Synthesis and characterization of a new reusable calix[4]arene-bonded silica gel sorbent for antidiabetic drugs. RSC Advances, 12, 25123-25132. https://doi.org/10.1039/D2RA04530C
  • Khan, M. S., & Khan, M. S. (2012). Comparative theoretical study of iron and magnesium incorporated porphyrin induced carbon nanotubes and their interaction with hydrogen molecule. Physica E: Low-dimensional Systems and Nanostructures, 44, 1857-1861. https://doi.org/10.1016/j.physe.2012.05.010
  • Kobko, N., & Dannenberg, J. (2001). Effect of basis set superposition error (BSSE) upon ab initio calculations of organic transition states. Journal of Physical Chemistry A 105(10), 1944-50. https://doi.org/10.1021/jp001970b
  • Lee, C., Yang, W., & Parr, R. G. (1988). Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785. https://doi.org/10.1103/PhysRevB.37.785
  • Lefebvre, C., Rubez, G., Khartabil, H., Boisson, J. C., Contreras-Garcia, J., Hénon, E. (2017). Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density. Physical Chemistry Chemical Physics, 19, 17928-17936. https://doi.org/10.1039/C7CP02110K
  • Li, L., & Zhao, J. (2020). Defected boron nitride nanosheet as an electronic sensor for 4-aminophenol: A density functional theory study. Journal of Molecular Liquids, 306. https://doi.org/10.1016/j.molliq.2020.112926
  • Li, X., Yin, Z., Zhai, Y., Kang, W., Shi, H., & Li, Z. (2020). Magnetic solid-phase extraction of four β-lactams using polypyrrole-coated magnetic nanoparticles from water samples by micellar electrokinetic capillary chromatography analysis. Journal of Chromatography A, 1610, 460541. https://doi.org/10.1016/j.chroma.2019.460541
  • Li, Y., Shi, M., Xia, M., & Wang, F. (2021). The enhanced adsorption of ampicillin and amoxicillin on modified montmorillonite with dodecyl dimethyl benzyl ammonium chloride: experimental study and density functional theory calculation. Advanced Powder Technology, 32(10), 3465-3475. https://doi.org/10.1016/j.apt.2021.08.001
  • Lu, T., Chen, & F. (2012). Multiwfn: A multifunctional wavefunction analyzer. Journal of computational chemistry, 33, 580-592. https://doi.org/10.1002/jcc.22885
  • Mishal, B. H., Das, S., Mahajan, V. N., Dharne, M. S., Joshi, R. S., & Giri, A. P. (2024). An adsorption based downstream processing approach for penicillin v from a penicillium chrysogenum bioncl I22 culture filtrate. ACS Omega, 9(24), 25859–25869. https://doi.org/10.1021/acsomega.4c00251
  • O’Boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2007). cclib: A library for package-independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Pearson, R. G. (2005). Chemical hardness and density functional theory. Journal of Chemical Sciences, 117, 369-377. https://doi.org/10.1007/BF02708340
  • Peng, S., Cho, K., Qi, P., & Dai, H. (2004). Ab initio study of CNT NO2 gas sensor. Chemical Physics Letters, 387(4-6), 271-276. https://doi.org/10.1016/j.cplett.2004.02.026
  • Sundaram, S. M., Gurusamy, A., & Kumarasamy, M. (2024). Green synthesis of biochar from miscanthus sinensis plant and characterized by the adsorption of antibiotics biochar from aqueous solution. Iranian Journal of Chemistry and Chemical Engineering, 43(2), 610-620. https://doi.org/10.30492/ijcce.2024.562763.5613
  • Tri, N. N., Ho, D. Q., Carvalho, A. J. P., Nguyen, M. T., & Trung, N. T. (2021). Insights into adsorptive interactions between antibiotic molecules and rutile-TiO2 (110) surface. Surface Science, 703, 121723. https://doi.org/10.1016/j.susc.2020.121723
  • Wang, Q., Sun, Y., Zhao, S., Bai, C., Cong, Z., Dong, Y., & Wang, T. (2023). Metallo-β-lactamases immobilized by magnetic zeolitic imidazolate frameworks-8 for degradation of β-lactam antibiotics in an aqueous environment. RSC Advances, 13, 34884-34890. https://doi.org/10.1039/D3RA05973A
  • Woodward, Z., Brooks, P., Smith, B. M., Wallis, M., & Ogbourne, S. M. (2018). Adsorption and leachable contamination of flucloxacillin, cyclosporin and amiodarone following delivery through an intravenous administration set. Pharmaceutical Research, 35(121). https://doi.org/10.1007/s11095-018-2409-2
  • Yuksel, N., Köse, A., & Fellah, M. F. (2020). A Density Functional Theory study of molecular hydrogen adsorption on Mg site in OFF type zeolite cluster. International Journal of Hydrogen Energy, 45(60), 34983-34992. https://doi.org/10.1016/j.ijhydene.2020.02.110
  • Yuksel, N., Köse, A., & Fellah, M. F. (2021). The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing. Journal of Inclusion Phenomena and Macrocyclic Chemistry, 101, 77-89. https://doi.org/10.1007/s10847-021-01087-1

Density functional theory study of β-lactam anti-biotics (penicillin, floxacillin and ampicillin) detection and adsorption onto calix[4]arene

Yıl 2025, Cilt: 15 Sayı: 4, 1112 - 1124, 15.12.2025
https://doi.org/10.17714/gumusfenbil.1752525

Öz

In this work, the adsorption and sensing behavior of a calixarene macrocycle toward three β-lactam anti-biotics was probed by density functional theory (DFT). All calculations were carried out with the B3LYP hybrid functional using the 6-31G(d,p) basis set. The simulations demonstrate that the calix[4]arene scaffold exhibits a pronounced sensing response exclusively for floxacillin: its sensor response factor is roughly six orders of magnitude greater than those obtained for ampicillin and penicillin. Additionally, analysis of frontier orbitals shows a 16.4% contraction of the HOMO–LUMO gap upon floxacillin binding, a perturbation that is visually evident in the density of states profile. Taken together, these findings establish calix[4]arene as a viable electronic sensor for floxacillin under ambient conditions.

Kaynakça

  • Al-Tawarh, W. M., Altarawneh, R. M., Al-Trawneh, S. A., Alshahateet, S. F., & Al-Taweel, S. (2023). An effective calix[4]arene-based adsorbent for tetracycline removal from water systems: Kinetic, isotherm, and thermodynamic studies. Journal of Chemical Research. https://doi.org/10.1177/17475198231187600
  • Becke, A. D. (1988). Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38, 3098. https://doi.org/10.1103/PhysRevA.38.3098
  • Demir, S., & Fellah, M. F. (2020). A DFT study on Pt doped (4,0) SWCNT: CO adsorption and sensing. Applied Surface Science, 504. https://doi.org/10.1016/j.apsusc.2019.144141
  • Eno, E. A., Louis, H., Unimuke, T. O., Gber, T. E., Mbonu, I. J., Ndubisi, C. J., & Adalikwu, S. A. (2022). Reactivity, stability, and thermodynamics of para-methylpyridinium-based ionic liquids: Insight from DFT, NCI, and QTAIM. Journal of Ionic Liquids, 2, 100030. https://doi.org/10.1016/j.jil.2022.100030
  • Fellah, M. F., & Onal, I. (2013). A DFT study on the [VO]1+–ZSM-5 cluster: direct methanol oxidation to formaldehyde by N2O. Physical Chemistry Chemical Physics, 15(33), 13969-13977. https://doi.org/10.1039/C3CP51637G
  • Fellah, M. F. (2019). Pt doped (8,0) single wall carbon nanotube as hydrogen sensor: A density functional theory study. International Journal of Hydrogen Energy 44(49), 27010-27021. https://doi.org/10.1016/j.ijhydene.2019.08.169
  • Foresman, J. B., & Frisch, A. (Eds). (1996). Exploring Chemistry with Electronic Structure Methods (2nd ed.). Gaussian Inc., Pittsburgh.
  • Frisch, M. J., et al. (2013). Gaussian 09, Revision D.01, Gaussian, Inc., Wallingford CT.
  • Hokmabadi, F., Zadmard, R., Jalali, M. R., & Abaee, M. S. (2022). Synthesis and characterization of a new reusable calix[4]arene-bonded silica gel sorbent for antidiabetic drugs. RSC Advances, 12, 25123-25132. https://doi.org/10.1039/D2RA04530C
  • Khan, M. S., & Khan, M. S. (2012). Comparative theoretical study of iron and magnesium incorporated porphyrin induced carbon nanotubes and their interaction with hydrogen molecule. Physica E: Low-dimensional Systems and Nanostructures, 44, 1857-1861. https://doi.org/10.1016/j.physe.2012.05.010
  • Kobko, N., & Dannenberg, J. (2001). Effect of basis set superposition error (BSSE) upon ab initio calculations of organic transition states. Journal of Physical Chemistry A 105(10), 1944-50. https://doi.org/10.1021/jp001970b
  • Lee, C., Yang, W., & Parr, R. G. (1988). Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density. Physical Review B, 37, 785. https://doi.org/10.1103/PhysRevB.37.785
  • Lefebvre, C., Rubez, G., Khartabil, H., Boisson, J. C., Contreras-Garcia, J., Hénon, E. (2017). Accurately extracting the signature of intermolecular interactions present in the NCI plot of the reduced density gradient versus electron density. Physical Chemistry Chemical Physics, 19, 17928-17936. https://doi.org/10.1039/C7CP02110K
  • Li, L., & Zhao, J. (2020). Defected boron nitride nanosheet as an electronic sensor for 4-aminophenol: A density functional theory study. Journal of Molecular Liquids, 306. https://doi.org/10.1016/j.molliq.2020.112926
  • Li, X., Yin, Z., Zhai, Y., Kang, W., Shi, H., & Li, Z. (2020). Magnetic solid-phase extraction of four β-lactams using polypyrrole-coated magnetic nanoparticles from water samples by micellar electrokinetic capillary chromatography analysis. Journal of Chromatography A, 1610, 460541. https://doi.org/10.1016/j.chroma.2019.460541
  • Li, Y., Shi, M., Xia, M., & Wang, F. (2021). The enhanced adsorption of ampicillin and amoxicillin on modified montmorillonite with dodecyl dimethyl benzyl ammonium chloride: experimental study and density functional theory calculation. Advanced Powder Technology, 32(10), 3465-3475. https://doi.org/10.1016/j.apt.2021.08.001
  • Lu, T., Chen, & F. (2012). Multiwfn: A multifunctional wavefunction analyzer. Journal of computational chemistry, 33, 580-592. https://doi.org/10.1002/jcc.22885
  • Mishal, B. H., Das, S., Mahajan, V. N., Dharne, M. S., Joshi, R. S., & Giri, A. P. (2024). An adsorption based downstream processing approach for penicillin v from a penicillium chrysogenum bioncl I22 culture filtrate. ACS Omega, 9(24), 25859–25869. https://doi.org/10.1021/acsomega.4c00251
  • O’Boyle, N. M., Tenderholt, A. L., & Langner, K. M. (2007). cclib: A library for package-independent computational chemistry algorithms. Journal of Computational Chemistry, 29(5), 839-845. https://doi.org/10.1002/jcc.20823
  • Pearson, R. G. (2005). Chemical hardness and density functional theory. Journal of Chemical Sciences, 117, 369-377. https://doi.org/10.1007/BF02708340
  • Peng, S., Cho, K., Qi, P., & Dai, H. (2004). Ab initio study of CNT NO2 gas sensor. Chemical Physics Letters, 387(4-6), 271-276. https://doi.org/10.1016/j.cplett.2004.02.026
  • Sundaram, S. M., Gurusamy, A., & Kumarasamy, M. (2024). Green synthesis of biochar from miscanthus sinensis plant and characterized by the adsorption of antibiotics biochar from aqueous solution. Iranian Journal of Chemistry and Chemical Engineering, 43(2), 610-620. https://doi.org/10.30492/ijcce.2024.562763.5613
  • Tri, N. N., Ho, D. Q., Carvalho, A. J. P., Nguyen, M. T., & Trung, N. T. (2021). Insights into adsorptive interactions between antibiotic molecules and rutile-TiO2 (110) surface. Surface Science, 703, 121723. https://doi.org/10.1016/j.susc.2020.121723
  • Wang, Q., Sun, Y., Zhao, S., Bai, C., Cong, Z., Dong, Y., & Wang, T. (2023). Metallo-β-lactamases immobilized by magnetic zeolitic imidazolate frameworks-8 for degradation of β-lactam antibiotics in an aqueous environment. RSC Advances, 13, 34884-34890. https://doi.org/10.1039/D3RA05973A
  • Woodward, Z., Brooks, P., Smith, B. M., Wallis, M., & Ogbourne, S. M. (2018). Adsorption and leachable contamination of flucloxacillin, cyclosporin and amiodarone following delivery through an intravenous administration set. Pharmaceutical Research, 35(121). https://doi.org/10.1007/s11095-018-2409-2
  • Yuksel, N., Köse, A., & Fellah, M. F. (2020). A Density Functional Theory study of molecular hydrogen adsorption on Mg site in OFF type zeolite cluster. International Journal of Hydrogen Energy, 45(60), 34983-34992. https://doi.org/10.1016/j.ijhydene.2020.02.110
  • Yuksel, N., Köse, A., & Fellah, M. F. (2021). The supramolecularly complexes of calix[4]arene derivatives toward favipiravir antiviral drug (used to treatment of COVID-19): a DFT study on the geometry optimization, electronic structure and infrared spectroscopy of adsorption and sensing. Journal of Inclusion Phenomena and Macrocyclic Chemistry, 101, 77-89. https://doi.org/10.1007/s10847-021-01087-1
Toplam 27 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Konular Çevresel Biyojeokimya, Sensör Teknolojisi , Supramoleküler Kimya, Hesaplamalı Kimya, Çevresel ve Sürdürülebilir Süreçler
Bölüm Araştırma Makalesi
Yazarlar

Numan Yüksel 0000-0003-1268-5775

Gönderilme Tarihi 28 Temmuz 2025
Kabul Tarihi 17 Kasım 2025
Yayımlanma Tarihi 15 Aralık 2025
Yayımlandığı Sayı Yıl 2025 Cilt: 15 Sayı: 4

Kaynak Göster

APA Yüksel, N. (2025). Density functional theory study of β-lactam anti-biotics (penicillin, floxacillin and ampicillin) detection and adsorption onto calix[4]arene. Gümüşhane Üniversitesi Fen Bilimleri Dergisi, 15(4), 1112-1124. https://doi.org/10.17714/gumusfenbil.1752525