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Species Delimitation Analysis to Reveal the Origin of Turkish Podarcis siculus siculus (Rafinesque-Schmaltz, 1810) Populations

Year 2022, Volume: 8 Issue: 2, 340 - 348, 22.08.2022
https://doi.org/10.24180/ijaws.1027526

Abstract

It is possible that the origin of Podarcis sicurus, which was introduced to Turkey by humans, is based on two different source populations or that the samples introduced to different geographies may differ at the subspecies level. The rapid evolutionary processes observed in island species can similarly occur in introduced and isolated populations. In this study Tissues were taken from samples obtained from Zonguldak, Istanbul and Samsun. mtDNA gene sequences were obtained and combined with Podarcis sicurus samples from sequences downloaded from Genbank. Phylogenetic analyzes and species delimitation analyzes were executed. Accordingly results, the specimens obtained from Turkey were grouped into two different haplotypes, similar to their geographic isolation. It has been observed that these groups are different resource groups. Species delimination analyzes show that the differentiation of these haplotypes may be at the subspecies level.

Supporting Institution

DEÜ

Project Number

2017.KB.FEN.038

References

  • Akaike, H. (1973). Information theory and an extension of the maximum likelihood principle. In B. N. Petrov and F. Csaki (Eds.), Second international symposium on information theory (pp. 267-281). Budapest: Academiai Kiado.
  • Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716.
  • Ardila, N. E., Giribet, & G., Sánchez, J. A. (2012). A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history. BMC Evolutionary Biology, 12, 246.
  • Başoğlu, M., & Baran, İ. (1977). Türkiye Sürüngenleri. Kısım I. Kaplumbağa ve Kertenkeleler. Ege Üniversitesi Fen Fakültesi Kitaplar Serisi No: 76. İzmir, Turkey: Ege University Publishing House (in Turkish).
  • Berthold, A. A. (1842). Ueber verschiedene neue oder seltene Amphibienarten. Göttingen, Germany (in German).
  • Bird, C. G. (1936). The distribution of reptiles and amphibians in Asiatic Turkey, with notes on a collection from the vilayets of Adana, Gaziantep, and Malatya. Annals and Magazine of Natural History, 18(104), 257-281.
  • Bodenheimer, F. S. (1944). Introduction into the knowledge of the Amphibia and Reptilia of Turkey. Revista de la Facultad de Science., B9, 1-78.
  • Buglione,M., Petrelli, S., Maselli, V., Trapanese, M., Salvemini, M., Aceto S, Di Cosmo, A., & Fulgione, D. (2019). Fixation of genetic variation and optimization of gene expression: The speed of evolution in isolated lizard populations undergoing Reverse Island Syndrome. PLoS One, 14, 1–17. https://doi.org/10.1371/journal.pone.0224607
  • Capula, M., & Ceccarelli, A. (2003). Distribution on genetic variation and taxonomy of insular and mainland populations of the Italian wall lizard, Podarcis sicula. Amphibia-Reptilia, 24(4), 483-495. https://doi.org/10.1163/15685380260449199
  • Colangelo, P., Bannikova, A. A., Krystufek, B., Lebedev, V. S., Annesi, F., Capanna, E., & Loy, A. (2010) Molecular systematics and evolutionary biogeography of the genus Talpa (Soricomorpha: Talpidae). Molecular Phylogenetics and Evolution, 55(2), 372-380.
  • Çevik, İ. E. (1999). Trakya’da yaşayan kertenkele türlerinin taksonomik durumu (Lacertilia: Anguidae, Lacertidae, Scincidae). Turkish Journal of Zoology, 23, 23-35.
  • Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUTY and the BEAST 1.7. Molecular Biology and Evolution, 29(8),1969-1973.
  • Emerson, B. C. (2002). Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951–966.
  • Gorman, G. C., Soulé, M., Yang, S. Y., & Nevo, E. (1975). Evolutionary genetics of insular Adriatic lizards. Evolution, 29, 52-71.
  • Hall, T. A. (1999). BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
  • Henle, K., & Klaver, C. J. J. (1986). Podarcis sicula (RafinesqueSchmaltz, 1810) Ruineneidechse. In W. Böhme (Ed.), Handbuch der Amphibien und Reptilien Europas, Echsen III (Podarcis) (pp. 254-342). Aula-Verlag, Wiesbaden.
  • Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754-5.
  • Hür, H., Uğurtaş, İ. H., & İşbilir, A. (2008). The amphibian and reptile species of Kazdağı National Park. Turkish Journal of Zoology, 32, 359-362.
  • Koç, H.,Bülbül, U., Kurnaz, M., Eroğlu, A. İ., & Kutrup, B. (2018). Phylogenetic relationships of Podarcis siculus (Rafinesque-Schmaltz, 1810) and Podarcis tauricus (Pallas, 1814) in Turkey, based on mitochondrial DNA. Mitochondrial DNA Part A, 29(5), 664–673. https://doi.org/10.1080/24701394.2017.1342245s
  • Kolbe, J. J., Lavin, B. R., Burke, R. L., Rugiero, L., & Capula, M., Luiselli, L. (2013). The desire for variety: Italian wall lizard (Podarcis siculus) populations introduced to the United States via the pet trade are derived from multiple native-range sources. Biological Invasions, 15(4), 775–83.
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549.
  • Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
  • Mollov, I. (2009). A new locality of the Italian Wall Lizard Podarcis siculus (Rafinesque-Schmaltz, 1810) from Turkey. ZooNotes 6, 1-3.
  • Oliverio, M., Bologna, M. A., Monciotti, A., Annesi, F., & Mariottini, P. (1998). Molecular phylogenetics of the Italian Podarcis lizards (Reptilia, Lacertidae). Italian Journal of Zoology, 65, 315-324.
  • Oliverio,M., Burke, R., Bologna, M. A., Wirz, A., & Mariottini, P. (2001). Molecular characterization of native (Italy) and introduced (USA) Podarcis sicula populations (Reptilia, Lacertidae). Italian Journal of Zoology, 68, 121-124. https://doi.org/10.1080/11250000109356395
  • Podnar,M., Mayer, W., & Tvrtkovic, N. (2005). Phylogeography of the Italian wall lizard, Podarcis sicula, as revealed by mitochondrial DNA sequences. Molecular Ecology, 14, 575-588. https://doi.org/10.1111/j.1365-294X.2005.02427.x.
  • Posada, D. (2008). jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25(7), 1253-1256. R Core Team (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67(5), 901–904.
  • Rambaut, A. (2009). FigTree, Version 1.3.1. Available at: http://tree.bio. ed.ac.uk/software/figtree/
  • Ronquist, F., & Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
  • Rozas, J., Ferrer-Mata, A., Sanchez-DelBarrio, J. C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S. E., & Sanchez-Gracia, A. (2017). DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution, 34(12), 3299–3302.
  • Schwarz, G. (1978). Estimating the Dimension of a Model. Annals of Statistics, 6(2), 461-464.
  • Senczuk, G., Colangelo, P., De Simone, E., Aloise, G., & Castiglia, R. (2017). A combination of long term fragmentation and glacial persistence drove the evolutionary history of the Italian wall lizard Podarcis siculus. BMC Evolutionary Biology, 17(6), 1-15. https://doi.org/10.1186/s12862-016-0847-1
  • Silva-Rocha, I., Salvi, D., & Carretero, M. A. (2012). Genetic data reveal a multiple origin for the populations of the Italian wall lizard Podarcis sicula (Squamata: Lacertidae) introduced in the Iberian Peninsula and Balearic islands. Italian Journal of Zoology, 79, 502-510.
  • Uğurtaş, İ. H., Yıldırımhan, H. S., & Öz, M. (2000). Two new localities of Lacerta sicula hieroglyphica Berthold, 1842 (Reptilia, Lacertidae). Turkish Journal of Zoology, 24, 253-256.

Türkiye Podarcis siculus siculus (Rafinesque-Schmaltz, 1810) Populasyonlarının Kökenini Ortaya Çıkarmak için Tür Sınırlarının Belirlenmesi

Year 2022, Volume: 8 Issue: 2, 340 - 348, 22.08.2022
https://doi.org/10.24180/ijaws.1027526

Abstract

Türkiye’ye insan eliyle getirilen Podarcis sicurus türünün kökeninin iki farklı kaynak populasyona dayanma olasılığı ya da farklı coğrafyalara taşınan örneklerin alttür seviyesinde farkılaşma olasılığı bulunmaktadır. Ada türlerinde gözlemlenen hızlı evrimleşme süreçleri, taşınmış ve izole olmuş popülasyonlarda da benzer şekilde ortaya çıkabilmektedir. Bu çalışmada Türkiye’den üç farklı lokaliteden; Zonguldak, İstanbul ve Samsun'dan elde edilen örneklerden dokular alınmıştır. mtDNA gen dizileri elde edilmiş ve Türkiye'ye ait Podarcis sicurus örnekleri ve Genbanktan indirilen dizilerle birleştirilmiştir. Filogenetik analizler ve tür sınırlama analizleri yapılmıştır. Buna göre, türün Türkiye'den elde edilen örnekleri coğrafik izolasyonlarına benzer şekilde iki farklı haplotipte gruplanmıştır. Bu grupların farklı kaynak grupları olduğu görülmüştür. Species delimination analizleri ise bu haplotiplerin farklılıklaşmasının alttür düzeyinde olabileceğini göstermektedir.

Project Number

2017.KB.FEN.038

References

  • Akaike, H. (1973). Information theory and an extension of the maximum likelihood principle. In B. N. Petrov and F. Csaki (Eds.), Second international symposium on information theory (pp. 267-281). Budapest: Academiai Kiado.
  • Akaike, H. (1974). A new look at the statistical model identification. IEEE Transactions on Automatic Control, 19, 716.
  • Ardila, N. E., Giribet, & G., Sánchez, J. A. (2012). A time-calibrated molecular phylogeny of the precious corals: reconciling discrepancies in the taxonomic classification and insights into their evolutionary history. BMC Evolutionary Biology, 12, 246.
  • Başoğlu, M., & Baran, İ. (1977). Türkiye Sürüngenleri. Kısım I. Kaplumbağa ve Kertenkeleler. Ege Üniversitesi Fen Fakültesi Kitaplar Serisi No: 76. İzmir, Turkey: Ege University Publishing House (in Turkish).
  • Berthold, A. A. (1842). Ueber verschiedene neue oder seltene Amphibienarten. Göttingen, Germany (in German).
  • Bird, C. G. (1936). The distribution of reptiles and amphibians in Asiatic Turkey, with notes on a collection from the vilayets of Adana, Gaziantep, and Malatya. Annals and Magazine of Natural History, 18(104), 257-281.
  • Bodenheimer, F. S. (1944). Introduction into the knowledge of the Amphibia and Reptilia of Turkey. Revista de la Facultad de Science., B9, 1-78.
  • Buglione,M., Petrelli, S., Maselli, V., Trapanese, M., Salvemini, M., Aceto S, Di Cosmo, A., & Fulgione, D. (2019). Fixation of genetic variation and optimization of gene expression: The speed of evolution in isolated lizard populations undergoing Reverse Island Syndrome. PLoS One, 14, 1–17. https://doi.org/10.1371/journal.pone.0224607
  • Capula, M., & Ceccarelli, A. (2003). Distribution on genetic variation and taxonomy of insular and mainland populations of the Italian wall lizard, Podarcis sicula. Amphibia-Reptilia, 24(4), 483-495. https://doi.org/10.1163/15685380260449199
  • Colangelo, P., Bannikova, A. A., Krystufek, B., Lebedev, V. S., Annesi, F., Capanna, E., & Loy, A. (2010) Molecular systematics and evolutionary biogeography of the genus Talpa (Soricomorpha: Talpidae). Molecular Phylogenetics and Evolution, 55(2), 372-380.
  • Çevik, İ. E. (1999). Trakya’da yaşayan kertenkele türlerinin taksonomik durumu (Lacertilia: Anguidae, Lacertidae, Scincidae). Turkish Journal of Zoology, 23, 23-35.
  • Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012). Bayesian phylogenetics with BEAUTY and the BEAST 1.7. Molecular Biology and Evolution, 29(8),1969-1973.
  • Emerson, B. C. (2002). Evolution on oceanic islands: molecular phylogenetic approaches to understanding pattern and process. Molecular Ecology, 11, 951–966.
  • Gorman, G. C., Soulé, M., Yang, S. Y., & Nevo, E. (1975). Evolutionary genetics of insular Adriatic lizards. Evolution, 29, 52-71.
  • Hall, T. A. (1999). BioEdit: A User-Friendly Biological Sequence Alignment Editor and Analysis Program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
  • Henle, K., & Klaver, C. J. J. (1986). Podarcis sicula (RafinesqueSchmaltz, 1810) Ruineneidechse. In W. Böhme (Ed.), Handbuch der Amphibien und Reptilien Europas, Echsen III (Podarcis) (pp. 254-342). Aula-Verlag, Wiesbaden.
  • Huelsenbeck, J. P., & Ronquist, F. (2001). MRBAYES: Bayesian inference of phylogeny. Bioinformatics, 17, 754-5.
  • Hür, H., Uğurtaş, İ. H., & İşbilir, A. (2008). The amphibian and reptile species of Kazdağı National Park. Turkish Journal of Zoology, 32, 359-362.
  • Koç, H.,Bülbül, U., Kurnaz, M., Eroğlu, A. İ., & Kutrup, B. (2018). Phylogenetic relationships of Podarcis siculus (Rafinesque-Schmaltz, 1810) and Podarcis tauricus (Pallas, 1814) in Turkey, based on mitochondrial DNA. Mitochondrial DNA Part A, 29(5), 664–673. https://doi.org/10.1080/24701394.2017.1342245s
  • Kolbe, J. J., Lavin, B. R., Burke, R. L., Rugiero, L., & Capula, M., Luiselli, L. (2013). The desire for variety: Italian wall lizard (Podarcis siculus) populations introduced to the United States via the pet trade are derived from multiple native-range sources. Biological Invasions, 15(4), 775–83.
  • Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular Evolutionary Genetics Analysis across computing platforms. Molecular Biology and Evolution, 35, 1547-1549.
  • Librado, P., & Rozas, J. (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25, 1451-1452.
  • Mollov, I. (2009). A new locality of the Italian Wall Lizard Podarcis siculus (Rafinesque-Schmaltz, 1810) from Turkey. ZooNotes 6, 1-3.
  • Oliverio, M., Bologna, M. A., Monciotti, A., Annesi, F., & Mariottini, P. (1998). Molecular phylogenetics of the Italian Podarcis lizards (Reptilia, Lacertidae). Italian Journal of Zoology, 65, 315-324.
  • Oliverio,M., Burke, R., Bologna, M. A., Wirz, A., & Mariottini, P. (2001). Molecular characterization of native (Italy) and introduced (USA) Podarcis sicula populations (Reptilia, Lacertidae). Italian Journal of Zoology, 68, 121-124. https://doi.org/10.1080/11250000109356395
  • Podnar,M., Mayer, W., & Tvrtkovic, N. (2005). Phylogeography of the Italian wall lizard, Podarcis sicula, as revealed by mitochondrial DNA sequences. Molecular Ecology, 14, 575-588. https://doi.org/10.1111/j.1365-294X.2005.02427.x.
  • Posada, D. (2008). jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25(7), 1253-1256. R Core Team (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.
  • Rambaut, A., Drummond, A. J., Xie, D., Baele, G., & Suchard, M. A. (2018). Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67(5), 901–904.
  • Rambaut, A. (2009). FigTree, Version 1.3.1. Available at: http://tree.bio. ed.ac.uk/software/figtree/
  • Ronquist, F., & Huelsenbeck, J. P. (2003). MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572-1574.
  • Rozas, J., Ferrer-Mata, A., Sanchez-DelBarrio, J. C., Guirao-Rico, S., Librado, P., Ramos-Onsins, S. E., & Sanchez-Gracia, A. (2017). DnaSP 6: DNA sequence polymorphism analysis of large data sets. Molecular Biology and Evolution, 34(12), 3299–3302.
  • Schwarz, G. (1978). Estimating the Dimension of a Model. Annals of Statistics, 6(2), 461-464.
  • Senczuk, G., Colangelo, P., De Simone, E., Aloise, G., & Castiglia, R. (2017). A combination of long term fragmentation and glacial persistence drove the evolutionary history of the Italian wall lizard Podarcis siculus. BMC Evolutionary Biology, 17(6), 1-15. https://doi.org/10.1186/s12862-016-0847-1
  • Silva-Rocha, I., Salvi, D., & Carretero, M. A. (2012). Genetic data reveal a multiple origin for the populations of the Italian wall lizard Podarcis sicula (Squamata: Lacertidae) introduced in the Iberian Peninsula and Balearic islands. Italian Journal of Zoology, 79, 502-510.
  • Uğurtaş, İ. H., Yıldırımhan, H. S., & Öz, M. (2000). Two new localities of Lacerta sicula hieroglyphica Berthold, 1842 (Reptilia, Lacertidae). Turkish Journal of Zoology, 24, 253-256.
There are 35 citations in total.

Details

Primary Language English
Subjects Ecology
Journal Section Wildlife and Ecology
Authors

Ferhat Matur 0000-0001-9488-1408

Kamil Candan 0000-0002-6934-3971

Çetin Ilgaz 0000-0001-7862-9106

C. Varol Tok 0000-0001-9323-9157

Mustafa Sözen 0000-0002-1911-605X

Muhsin Çoğal 0000-0002-7749-3566

Batuhan Yaman Yakın 0000-0003-4570-5111

Elif Yıldırım 0000-0001-9614-5754

Yusuf Kumlutaş 0000-0003-1154-6757

Project Number 2017.KB.FEN.038
Publication Date August 22, 2022
Submission Date November 24, 2021
Acceptance Date December 3, 2021
Published in Issue Year 2022 Volume: 8 Issue: 2

Cite

APA Matur, F., Candan, K., Ilgaz, Ç., Tok, C. V., et al. (2022). Species Delimitation Analysis to Reveal the Origin of Turkish Podarcis siculus siculus (Rafinesque-Schmaltz, 1810) Populations. International Journal of Agricultural and Wildlife Sciences, 8(2), 340-348. https://doi.org/10.24180/ijaws.1027526

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