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Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains

Year 2022, Volume: 12 Issue: 1, 133 - 141, 01.03.2022
https://doi.org/10.21597/jist.948813

Abstract

The plant-derived polysaccharides (Cellulose, xylose and amylose, etc.) are the most abundant renewable raw materials in nature. Cellulose and xylose are the predominant carbohydrate polymer components of the plant cell walls and the most abundant biopolymers in the world. Another plant-derived polysaccharide, starch is found in plant tubers, roots and seed endosperms as a major carbohydrate reserve. In this study, it was aimed to find multi-enzyme producer bacteria strains in terms of industrially important enzymes such as cellulase, xylanase and amylase. For this purpose, isolated Bacillus strains from different samples were qualitatively evaluated for cellulase, xylanase and amylase enzyme production potentials. The isolates that have the highest enzyme activity were selected for biochemical tests, molecular and phenotypic characterization. As a result of these characterization process, SB57, SB104, SB155, SB178, SB197 and SB199 strains were identified as Bacillus pumilus and SB118, SB138 strains were identified as Bacillus safensis. In addition to these strains, SB120 and SB147 strains were identified as Bacillus aerius and Bacillus licheniformis respectively. 16S rDNA sequence analysis results of these Bacillus strains were deposited in NCBI GenBank® under accession number KT371465 - KT371474 respectively.

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References

  • Adrio JL, Demain AL, 2014. Microbial enzymes: tools for biotechnological processes. Biomolecules, 4(1): 117-139.
  • Aehle W, 2007. Enzymes in industry: production and applications. John Wiley & Sons. Hoboken, NJ, USA.
  • Al-Dhabi NA, Esmail GA, Ghilan AKM, Arasu MV, Duraipandiyan V, Ponmurugan K, 2020. Isolation and purification of starch hydrolysing amylase from Streptomyces sp. Al-Dhabi-46 obtained from the Jazan region of Saudi Arabia with industrial applications. Journal of King Saud University-Science, 32(1): 1226-1232.
  • Ariffin H, Abdullah N, Umi-Kalsom MS, Shirai Y, Hassan, MA, 2006. Production and characterization of cellulase by Bacillus pumilus EB3. International Journal of Engineering Technologies, 3(1): 47-53.
  • Ayansina ADV, Adelaja AO, Mohammed SSD, 2017. Characterization of amylase from some Aspergillus and Bacillus species associated with cassava waste peels. Advances in Microbiology, 7(04): 80.
  • Barsby TL, Donald AM, Frazier PJ, 2001. Starch: Advances in structure and function. Royal Society of Chemistry. Cambridge. UK.
  • Bayram S, 2021. Production, purification, and characterization of Streptomyces sp. strain MPPS2 extracellular pyomelanin pigment. Archives of Microbiology, 203: 4419–4426 https://doi.org/10.1007/s00203-021-02437-w
  • Beg Q, Kapoor M, Mahajan L, Hoondal GS, 2001. Microbial xylanases and their industrial applications: a review. Applied microbiology and biotechnology, 56(3-4): 326-338.
  • Bhat MK, 2000. Cellulases and related enzymes in biotechnology. Biotechnology advances, 18(5): 355-383.
  • Bozoglu C, Hundur S, Alaylar B, Karadayi M, Gulluce M, 2015. Isolation and Molecular Characterization of Thermophilic Bacteria with Xylanase Activity from Thermal Springs in Erzurum. Journal of Life Sciences and Technologies, 3(1): 32-36
  • Chen CC, Ko TP, Huang JW, Guo RT, 2015. Heat‐and Alkaline‐Stable Xylanases: Application, Protein Structure and Engineering. ChemBioEng Reviews, 2(2): 95-106.
  • Cherry JR, Fidantsef AL, 2003. Directed evolution of industrial enzymes: an update. Current opinion in biotechnology, 14(4): 438-443.
  • Collins T, Gerday C, Feller G, 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS microbiology reviews, 29(1): 3-23.
  • Coughlan MP, 1985. Cellulose hydrolysis: the potential, the problems and relevant research at Galway. Biochemical Society Transactions, 13 (2): 405–406. https://doi.org/10.1042/bst0130405
  • Debarati H, Paswan KA, Abhik C, Ethina B, Malini B, 2014. Characterization and cell immobilization of a potent amylase producing mesophilic soil bacteria Bacillus cereus strain BRSC-S-A26MB. Journal of Mycopathological Research, 52(1): 11-19.
  • Dutron A, Georis J, Genot B, Dauvrin T, Collins T, Hoyoux A, Feller G, 2012. Use of family 8 enzymes with xylanolytic activity in baking. Granted Patents US8192772 (2012), EP1549147B1 (2011), CN1681392B (2010), DE60336153 D1 (2011), CA 2498014C (2011), ES2360942 (2011), DE60336153D1 (2011)Gordon RE, Haynes WC, Pang CHN, 1973. The genus Bacillus (No. 427). Agricultural Research Service, US Department of Agriculture.
  • Ghadiri E, Naghavi NS, Ghaedi K, 2021. Gene Production and Characterization of Bacillus Subtilis Cellulase Collected from Central-Northern Iran Forests. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 91: 543–548.
  • Gupta R, Gigras P, Mohapatra H, Goswami VK, Chauhan B, 2003. Microbial α-amylases: a biotechnological perspective. Process biochemistry, 38(11): 1599-1616.
  • Hammed AM, Jaswir I, Amid A, Alam Z, Asiyanbi-H, TT, Ramli N, 2013. Enzymatic hydrolysis of plants and algae for extraction of bioactive compounds. Food Reviews International, 29(4): 352-370.
  • Harley JP, Prescott LM, 2002. Laboratory Exercises in Microbiology, 5th ed. New York: McGraw-Hill Press, p466.
  • Hols P, Ferain T, Garmyn D, Bernard N, Delcour J, 1994. Use of homologous expression-secretion signals and vector-free stable chromosomal integration in engineering of Lactobacillus plantarum for alpha-amylase and levanase expression. Applied and Environmental Microbiology, 60(5): 1401-1413.
  • Horikoshi K, 1999. Alkaliphiles: some applications of their products for biotechnology. Microbiology and molecular biology reviews, 63(4): 735-750.
  • Kagan HM, Li W, 2003. Lysyl oxidase: properties, specificity, and biological roles inside and outside of the cell. Journal of cellular biochemistry, 88(4):660-672.
  • Kim JY, Hur SH, Hong JH, 2005. Purification and characterization of an alkaline cellulase from a newly isolated alkalophilic Bacillus sp. HSH-810. Biotechnology letters, 27(5): 313-316.
  • Kirk O, Borchert TV, Fuglsang CC, 2002. Industrial enzyme applications. Current opinion in biotechnology, 13(4): 345-351.
  • Li X, Xu Q, Shen H, Guo Y, Wu M, Peng Y, Xie H, 2019. Capturing CO2 to reversible ionic liquids for dissolution pretreatment of cellulose towards enhanced enzymatic hydrolysis. Carbohydrate polymers, 204: 50-58.
  • Mathlouthi N, Juin H, Larbier M, 2003. Effect of xylanase and β-glucanase supplementation of wheat-or wheat-and barley-based diets on the performance of male turkeys. British poultry science, 44(2): 291-298.
  • Merghni A, Leban N, Behi A, Bakhrouf A, 2014. Evaluation of the probiotic properties of Bacillus spp. strains isolated from Tunisian hypersaline environments. African journal of microbiology research, 8(4): 398-405.
  • Mishra P, Mishra J, Dwivedi SK, Arora NK, 2020. Microbial Enzymes in Biocontrol of Phytopathogens. In Microbial Enzymes: Roles and Applications in Industries (pp. 259-285). Springer, Singapore.
  • Naureen I, 2021. A Review on Microbial Enzymes, Synthesis, Biological Role, Current Applications and Future Perspectives. Scholars Bulletin, 7(3): 44-48.
  • Nelson K, Muge E, Wamalwa B, 2021. Cellulolytic Bacillus species isolated from the gut of the desert locust Schistocerca gregaria. Scientific African, 11, e00665. https://doi.org/10.1016/j.sciaf.2020.e00665
  • Nicholson WL, 2002. Roles of Bacillus endospores in the environment. Cellular and Molecular Life Sciences, 59(3): 410-416.
  • Podrepšek GH, Knez Ž, Leitgeb M, 2019. Activation of cellulase cross-linked enzyme aggregates (CLEAs) in scCO2. The Journal of Supercritical Fluids, 154: 104629.
  • Polaina J, MacCabe AP, 2007. Industrial enzymes. (pp. 531-547). Dortrecht: Springer.
  • Prade RA, 1995. Xylanases: from biology to biotechnology. Biotechnology and Genetic Engineering Reviews, 13: 100–131.
  • Reese ET, Mandels M, 1984. Rolling with the times: production and applications of Trichoderma reesei cellulase. In Annual reports on fermentation processes. 7: 1-20
  • Saadat F, 2017. A review on chimeric xylanases: methods and conditions. 3 Biotech, 7(1): 67.
  • Shajahan S, Moorthy IG, Sivakumar N, Selvakumar G, 2017. Statistical modeling and optimization of cellulase production by Bacillus licheniformis NCIM 5556 isolated from the hot spring, Maharashtra, India. Journal of King Saud University-Science, 29(3): 302-310.
  • Sharma HSS, 1987. Enzymatic degradation of residual noncellulosic polysaccharides present on dew-retted flax fibers. Applied Microbiology and Biotechnology, 26: 2714–2723.
  • Singh R, Kumar M, Mittal A, Mehta PK, 2016. Microbial enzymes: industrial progress in 21st century. 3 Biotech, 6(2): 1-15. https://doi.org/10.1007/s13205-016-0485-8
  • Taylor NG, 2007. Identification of cellulose synthase AtCesA7 (IRX3) in vivo phosphorylation sites—a potential role in regulating protein degradation. Plant molecular biology, 64(1): 161-171.
  • Teather RM, Wood PJ, 1982. Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Applied and environmental microbiology, 43(4): 777-780.
  • Thite VS, Nerurkar AS, Baxi NN, 2020. Optimization of concurrent production of xylanolytic and pectinolytic enzymes by Bacillus safensis M35 and Bacillus altitudinis J208 using agro-industrial biomass through Response Surface Methodology. Scientific reports, 10(1): 1-12.
  • Turnbull PC, Kramer JM, Melling J, 1991. Bacillus. Manual of clinical microbiology, 5: 296-303.
  • Whitman WB, Goodfellow M, Kämpfer P, Busse HJ, Trujillo ME, Ludwig W, Suzuki KI, 2012. Bergey's manual of systematic bacteriology: The Actinobacteria. Springer. New York. USA
  • Wilson, K. (2001). Preparation of genomic DNA from bacteria. Current protocols in molecular biology, 56(1): 2-4.
  • Yoon YM, An GH, Kim JK, Ahn SH, Cha YL, Yang J, Choi IH. 2014. Xylanase activity of Bacillus pumilus H10-1 isolated from Ceratotherium simum feces. Korean Society for Biotechnology and Bioengineering Journal, 29(5): 316-322.
Year 2022, Volume: 12 Issue: 1, 133 - 141, 01.03.2022
https://doi.org/10.21597/jist.948813

Abstract

Project Number

-

References

  • Adrio JL, Demain AL, 2014. Microbial enzymes: tools for biotechnological processes. Biomolecules, 4(1): 117-139.
  • Aehle W, 2007. Enzymes in industry: production and applications. John Wiley & Sons. Hoboken, NJ, USA.
  • Al-Dhabi NA, Esmail GA, Ghilan AKM, Arasu MV, Duraipandiyan V, Ponmurugan K, 2020. Isolation and purification of starch hydrolysing amylase from Streptomyces sp. Al-Dhabi-46 obtained from the Jazan region of Saudi Arabia with industrial applications. Journal of King Saud University-Science, 32(1): 1226-1232.
  • Ariffin H, Abdullah N, Umi-Kalsom MS, Shirai Y, Hassan, MA, 2006. Production and characterization of cellulase by Bacillus pumilus EB3. International Journal of Engineering Technologies, 3(1): 47-53.
  • Ayansina ADV, Adelaja AO, Mohammed SSD, 2017. Characterization of amylase from some Aspergillus and Bacillus species associated with cassava waste peels. Advances in Microbiology, 7(04): 80.
  • Barsby TL, Donald AM, Frazier PJ, 2001. Starch: Advances in structure and function. Royal Society of Chemistry. Cambridge. UK.
  • Bayram S, 2021. Production, purification, and characterization of Streptomyces sp. strain MPPS2 extracellular pyomelanin pigment. Archives of Microbiology, 203: 4419–4426 https://doi.org/10.1007/s00203-021-02437-w
  • Beg Q, Kapoor M, Mahajan L, Hoondal GS, 2001. Microbial xylanases and their industrial applications: a review. Applied microbiology and biotechnology, 56(3-4): 326-338.
  • Bhat MK, 2000. Cellulases and related enzymes in biotechnology. Biotechnology advances, 18(5): 355-383.
  • Bozoglu C, Hundur S, Alaylar B, Karadayi M, Gulluce M, 2015. Isolation and Molecular Characterization of Thermophilic Bacteria with Xylanase Activity from Thermal Springs in Erzurum. Journal of Life Sciences and Technologies, 3(1): 32-36
  • Chen CC, Ko TP, Huang JW, Guo RT, 2015. Heat‐and Alkaline‐Stable Xylanases: Application, Protein Structure and Engineering. ChemBioEng Reviews, 2(2): 95-106.
  • Cherry JR, Fidantsef AL, 2003. Directed evolution of industrial enzymes: an update. Current opinion in biotechnology, 14(4): 438-443.
  • Collins T, Gerday C, Feller G, 2005. Xylanases, xylanase families and extremophilic xylanases. FEMS microbiology reviews, 29(1): 3-23.
  • Coughlan MP, 1985. Cellulose hydrolysis: the potential, the problems and relevant research at Galway. Biochemical Society Transactions, 13 (2): 405–406. https://doi.org/10.1042/bst0130405
  • Debarati H, Paswan KA, Abhik C, Ethina B, Malini B, 2014. Characterization and cell immobilization of a potent amylase producing mesophilic soil bacteria Bacillus cereus strain BRSC-S-A26MB. Journal of Mycopathological Research, 52(1): 11-19.
  • Dutron A, Georis J, Genot B, Dauvrin T, Collins T, Hoyoux A, Feller G, 2012. Use of family 8 enzymes with xylanolytic activity in baking. Granted Patents US8192772 (2012), EP1549147B1 (2011), CN1681392B (2010), DE60336153 D1 (2011), CA 2498014C (2011), ES2360942 (2011), DE60336153D1 (2011)Gordon RE, Haynes WC, Pang CHN, 1973. The genus Bacillus (No. 427). Agricultural Research Service, US Department of Agriculture.
  • Ghadiri E, Naghavi NS, Ghaedi K, 2021. Gene Production and Characterization of Bacillus Subtilis Cellulase Collected from Central-Northern Iran Forests. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 91: 543–548.
  • Gupta R, Gigras P, Mohapatra H, Goswami VK, Chauhan B, 2003. Microbial α-amylases: a biotechnological perspective. Process biochemistry, 38(11): 1599-1616.
  • Hammed AM, Jaswir I, Amid A, Alam Z, Asiyanbi-H, TT, Ramli N, 2013. Enzymatic hydrolysis of plants and algae for extraction of bioactive compounds. Food Reviews International, 29(4): 352-370.
  • Harley JP, Prescott LM, 2002. Laboratory Exercises in Microbiology, 5th ed. New York: McGraw-Hill Press, p466.
  • Hols P, Ferain T, Garmyn D, Bernard N, Delcour J, 1994. Use of homologous expression-secretion signals and vector-free stable chromosomal integration in engineering of Lactobacillus plantarum for alpha-amylase and levanase expression. Applied and Environmental Microbiology, 60(5): 1401-1413.
  • Horikoshi K, 1999. Alkaliphiles: some applications of their products for biotechnology. Microbiology and molecular biology reviews, 63(4): 735-750.
  • Kagan HM, Li W, 2003. Lysyl oxidase: properties, specificity, and biological roles inside and outside of the cell. Journal of cellular biochemistry, 88(4):660-672.
  • Kim JY, Hur SH, Hong JH, 2005. Purification and characterization of an alkaline cellulase from a newly isolated alkalophilic Bacillus sp. HSH-810. Biotechnology letters, 27(5): 313-316.
  • Kirk O, Borchert TV, Fuglsang CC, 2002. Industrial enzyme applications. Current opinion in biotechnology, 13(4): 345-351.
  • Li X, Xu Q, Shen H, Guo Y, Wu M, Peng Y, Xie H, 2019. Capturing CO2 to reversible ionic liquids for dissolution pretreatment of cellulose towards enhanced enzymatic hydrolysis. Carbohydrate polymers, 204: 50-58.
  • Mathlouthi N, Juin H, Larbier M, 2003. Effect of xylanase and β-glucanase supplementation of wheat-or wheat-and barley-based diets on the performance of male turkeys. British poultry science, 44(2): 291-298.
  • Merghni A, Leban N, Behi A, Bakhrouf A, 2014. Evaluation of the probiotic properties of Bacillus spp. strains isolated from Tunisian hypersaline environments. African journal of microbiology research, 8(4): 398-405.
  • Mishra P, Mishra J, Dwivedi SK, Arora NK, 2020. Microbial Enzymes in Biocontrol of Phytopathogens. In Microbial Enzymes: Roles and Applications in Industries (pp. 259-285). Springer, Singapore.
  • Naureen I, 2021. A Review on Microbial Enzymes, Synthesis, Biological Role, Current Applications and Future Perspectives. Scholars Bulletin, 7(3): 44-48.
  • Nelson K, Muge E, Wamalwa B, 2021. Cellulolytic Bacillus species isolated from the gut of the desert locust Schistocerca gregaria. Scientific African, 11, e00665. https://doi.org/10.1016/j.sciaf.2020.e00665
  • Nicholson WL, 2002. Roles of Bacillus endospores in the environment. Cellular and Molecular Life Sciences, 59(3): 410-416.
  • Podrepšek GH, Knez Ž, Leitgeb M, 2019. Activation of cellulase cross-linked enzyme aggregates (CLEAs) in scCO2. The Journal of Supercritical Fluids, 154: 104629.
  • Polaina J, MacCabe AP, 2007. Industrial enzymes. (pp. 531-547). Dortrecht: Springer.
  • Prade RA, 1995. Xylanases: from biology to biotechnology. Biotechnology and Genetic Engineering Reviews, 13: 100–131.
  • Reese ET, Mandels M, 1984. Rolling with the times: production and applications of Trichoderma reesei cellulase. In Annual reports on fermentation processes. 7: 1-20
  • Saadat F, 2017. A review on chimeric xylanases: methods and conditions. 3 Biotech, 7(1): 67.
  • Shajahan S, Moorthy IG, Sivakumar N, Selvakumar G, 2017. Statistical modeling and optimization of cellulase production by Bacillus licheniformis NCIM 5556 isolated from the hot spring, Maharashtra, India. Journal of King Saud University-Science, 29(3): 302-310.
  • Sharma HSS, 1987. Enzymatic degradation of residual noncellulosic polysaccharides present on dew-retted flax fibers. Applied Microbiology and Biotechnology, 26: 2714–2723.
  • Singh R, Kumar M, Mittal A, Mehta PK, 2016. Microbial enzymes: industrial progress in 21st century. 3 Biotech, 6(2): 1-15. https://doi.org/10.1007/s13205-016-0485-8
  • Taylor NG, 2007. Identification of cellulose synthase AtCesA7 (IRX3) in vivo phosphorylation sites—a potential role in regulating protein degradation. Plant molecular biology, 64(1): 161-171.
  • Teather RM, Wood PJ, 1982. Use of Congo red-polysaccharide interactions in enumeration and characterization of cellulolytic bacteria from the bovine rumen. Applied and environmental microbiology, 43(4): 777-780.
  • Thite VS, Nerurkar AS, Baxi NN, 2020. Optimization of concurrent production of xylanolytic and pectinolytic enzymes by Bacillus safensis M35 and Bacillus altitudinis J208 using agro-industrial biomass through Response Surface Methodology. Scientific reports, 10(1): 1-12.
  • Turnbull PC, Kramer JM, Melling J, 1991. Bacillus. Manual of clinical microbiology, 5: 296-303.
  • Whitman WB, Goodfellow M, Kämpfer P, Busse HJ, Trujillo ME, Ludwig W, Suzuki KI, 2012. Bergey's manual of systematic bacteriology: The Actinobacteria. Springer. New York. USA
  • Wilson, K. (2001). Preparation of genomic DNA from bacteria. Current protocols in molecular biology, 56(1): 2-4.
  • Yoon YM, An GH, Kim JK, Ahn SH, Cha YL, Yang J, Choi IH. 2014. Xylanase activity of Bacillus pumilus H10-1 isolated from Ceratotherium simum feces. Korean Society for Biotechnology and Bioengineering Journal, 29(5): 316-322.
There are 47 citations in total.

Details

Primary Language English
Subjects Structural Biology
Journal Section Biyoloji / Biology
Authors

Sinan Bayram 0000-0002-2156-1566

Mehmet Nuri Aydoğan 0000-0001-7518-4746

Project Number -
Publication Date March 1, 2022
Submission Date June 7, 2021
Acceptance Date November 12, 2021
Published in Issue Year 2022 Volume: 12 Issue: 1

Cite

APA Bayram, S., & Aydoğan, M. N. (2022). Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains. Journal of the Institute of Science and Technology, 12(1), 133-141. https://doi.org/10.21597/jist.948813
AMA Bayram S, Aydoğan MN. Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains. J. Inst. Sci. and Tech. March 2022;12(1):133-141. doi:10.21597/jist.948813
Chicago Bayram, Sinan, and Mehmet Nuri Aydoğan. “Searching for Versatile Polysaccharide-Degrading Alkali-Tolerant or Alkaliphilic Bacillus Strains”. Journal of the Institute of Science and Technology 12, no. 1 (March 2022): 133-41. https://doi.org/10.21597/jist.948813.
EndNote Bayram S, Aydoğan MN (March 1, 2022) Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains. Journal of the Institute of Science and Technology 12 1 133–141.
IEEE S. Bayram and M. N. Aydoğan, “Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains”, J. Inst. Sci. and Tech., vol. 12, no. 1, pp. 133–141, 2022, doi: 10.21597/jist.948813.
ISNAD Bayram, Sinan - Aydoğan, Mehmet Nuri. “Searching for Versatile Polysaccharide-Degrading Alkali-Tolerant or Alkaliphilic Bacillus Strains”. Journal of the Institute of Science and Technology 12/1 (March 2022), 133-141. https://doi.org/10.21597/jist.948813.
JAMA Bayram S, Aydoğan MN. Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains. J. Inst. Sci. and Tech. 2022;12:133–141.
MLA Bayram, Sinan and Mehmet Nuri Aydoğan. “Searching for Versatile Polysaccharide-Degrading Alkali-Tolerant or Alkaliphilic Bacillus Strains”. Journal of the Institute of Science and Technology, vol. 12, no. 1, 2022, pp. 133-41, doi:10.21597/jist.948813.
Vancouver Bayram S, Aydoğan MN. Searching for Versatile Polysaccharide-Degrading Alkali-tolerant or Alkaliphilic Bacillus Strains. J. Inst. Sci. and Tech. 2022;12(1):133-41.