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Molecular Identification of Yeasts Isolated from Thermophilic Environment in Aydın Province

Year 2017, Volume: 8 Issue: 1, 48 - 59, 28.04.2017

Abstract

For
the isolation of thermophilic yeasts, soil and water samples around of Bereket
geothermal plants in Buharkent district of Aydin province were used as
material.
As a result of the obtained data and analyzes, it
was determined that certain strains showed homologies with the regions of ITS1
and ITS2 at the rates of 98% and 99% of the isolates.
These
species are registered in GenBank Saccharomyces cerevisiae strain levule 23, Candida albicans,
Candida albicans strain m74a,
Pichia jadinii strain
ATCC 22023, Saccharomyces cerevisiae, Kluyveromyces marxianus strain P2, Cyberlindnera jadinii strain h79b and Candida glabrata strain 86A are identified as yeast
species.

References

  • Abdel-Sater M.A., Moubasher A.A., Soliman Z. Identification of three yeast species using the conventional and internal transcribed spacer region sequencing methods as first or second global record from human superficial infections, Mycoses, 59(10) 652-661 (2016).
  • Anonim. Kaplıcaya Sahip Belediyeler Birliği (2001).
  • Arthur H., Watson K. Thermal adaptation in yeast: growth temperatures, membrane lipid, and cytochrome composition of psychrophilic, mesophilic, and thermophilic yeasts, Journal of Bacteriology, 128 56–68 (1976).
  • Baker G.C., Gaffer S., Cowan A.D., Suharto A.R. Bacterial community analysis of Indonesian hot springs, FEMS Microbiology Letters, 200 103-109 (2001).
  • Charles P.E, Dalle F., Aube H., Doise J.M, Quenot J.P, Aho L.S, Chavanet P., Blettery B. Candida spp. colonization significance in critically ill medical patients: a prospective study, Intensive Care Medicine, 31(3) 393-400 (2005).
  • Choi G.W., Umb H.J., Kim Y., Kang H.w., Kim M., Chung B.W., Kim Y.H. Isolation and characterization of two soil derived yeasts for bioethanol production on Cassava starch, Biomass and Bioenergy, 34(8) 1223-1231 (2010).
  • Deacon J. The microbial world: Thermophilic microorganisms produced by institute of Cell and Molecular Biology. The University of Edinburgh, (http://helios.bto.ed.ac.uk/bto/microbes/thermo.htm.), (2007).
  • Dlauchy D., Tornai-Lehoczki J., Peter G. Restriction enzyme analysis of PCR amplified rDNA as a taxonomic tool in yeast identification, Systematic and Applied Microbiology, 22(3) 445-53 (1999).
  • El-Latif Hesham A., Wambui V., Henry Ogola J.O., Maina J.M. Phylogenetic analysis of isolated biofuel yeasts based on 5.8S-ITS rDNAand D1/D2 26S rDNA sequences, Journal of Genetic Engineering and Biotechnology, 12(1) 37-43 (2014).
  • Fernandez-Espinar M.T, Martorell R., De Llanos R., Querol A. Molecular methods to identify and characterize yeasts in food sand beverages. In: Yeasts in food and beveragesed: Querol A. and Fleet G (eds), Springer-Verlag, Berlin, Germany, p. 55-82, (2006).
  • Fitzpatric D.A., Logue M.E., Stajich J.E., Butler G. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis, BMC Evolutionary Biology, 6(99) 1-15 (2006).
  • Genç T.T., Çıldır İ.N. Bozcaada üzüm çeşitleri üzerinde Non-Saccharomyces mayaların dağılımı, Biyoloji Bilimleri Araştırma Dergisi, 5(1) 115-120 (2012).
  • Gonz´alez-Hern´andez J.C., Perez E., Damian R.M., Chavez-Parga M.C. Isolation, molecular and fermentative characterization of a yeast used in ethanol production during mezcal elaboration, Revista Mexicana de Ingeniería Química, 11(3) 389-400 (2012).
  • Hierro A., Sun J., Rusnak A.S., Kim J., Prag G., Emr S.D., Hurley J.H. Structure of the ESCRT-II endosomal trafficking complex, Nature, 431(7005) 221-225 (2004).
  • Hoffman C.S., Winston F. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for trans formation of Escherichia coli, Gene, 57(2) 267–272 (1987).
  • Hundson H.J. Fungal Biology. Edward Amold Press, London, 6 158-75 (1987).
  • Kurtzman C.P., Robnett C.J. Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species, FEMS Yeast Research, 13(1) 23-33 (2013).
  • Madigan MT, Martinko JM, Parker J. Brock biology of microorganisms, 14th edn. Pearson Education Limited (2015). Lee B.H. Fundamentals of food biotechnolology, VCH Publishers, USA, p. 431, (1996).
  • Lopes M.B, Soden A., Martens A., Henschke P.A, Langridge P. Differentiation and species identification of yeasts using PCR, International Journal of Systematic Bacteriology, 48(1) 279-286 (1998).
  • Pfaller M.A., Diekema D.J. Rare and emerging opportunistic fungal pathogens: Concern for resistance beyond Candida albicans and Aspergillus fumigatus, Journal of Clinical Microbiology, 42(10) 4419-4431 (2004).
  • Redman R.S, Litvintseva A., Sheehan K.B., Henson J.M., Rodringuez R.J. Fungi from geothermal soils in Yellowstone National Park. Applied and Environmental Microbiology, 65 5193-7 (1999).
  • Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spouge J.L., Levesque C.A., Chen W., Consortium F.B. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi, Pnas, 109(16) 6241–6246 (2012).
  • Senses-Ergul Ş., Agoston R., Belak A., Deak T. Characterization of some yeasts isolated from foods by traditional and molecular tests, International Journal of Food Microbiology, 108(1) 120-124 (2006).
  • Shin K.S, Shin Y.K, Yoon J.H, Park Y.H. Candida thermophila sp. nov., a novel thermophilic yeast isolated from soil, International Journal of Systematic Evolutionary Microbiology, 51 2167–2170, (2001).
  • Šuranská H., Raspor P., Uroić K., Golić N., Kos B., Mihajlović S., Begović J., Šušković J., Topisirović L., Čadež N. Characterisation of the yeast and mould biota in traditional white pickled cheeses by culture-dependent and independent molecular techniques, Folia Microbiologica (Praha), 61(6) 455-463 (2016).
  • Tofalo R., Chaves-López C., DiFabio F., Schirone M., Felis G.E., Torriani S., Paparella A., Suzzi G. Molecular identification and osmotolerant profile of wine yeasts that ferment a high sugar grape must, International Journal of Food Microbiology, 130(3) 179-187 (2009).
  • Van den Burg B. Extremophiles as a source for novel enzymes, Current Opinion Microbiology, 6(3), 213-218 (2003).
  • Van Der Vossen J.M.B.M., Rahaoui H., De Nijs M.W.C.M.,Hartog B.J. PCR methods for tracing and detection of yeasts in the food chain. In: Yeasts in Food, Boekhout T, Robert V (eds), BayerleinGmbH, Neusass, Germany, p. 123-137, (2003).
  • Vaughan-Martini A. Reflections on the clasification of yeasts for different end-users in biotechnology, ecology, and medicine, International Microbiology, 6(3) 175-182 (2003).
  • White T.J., Bruns T., Lee S., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A.,Gelfand, D.H., Snissky, J.J., White, T.J. (Eds.), PCR protocols: A guide to method sand applications. AcademicPressInc.,NewYork, p. 315–322, (1990).
  • Zhang Y., Wu W.P., Hu D.M., Su Y.Y., Cai L. A new thermophilic species of Myceliophthora from China, Mycological Progress, 13(1)165–170 (2014).

Aydın İlinde Termofilik Çevreden İzole Edilen Mayaların Moleküler Tanısı

Year 2017, Volume: 8 Issue: 1, 48 - 59, 28.04.2017

Abstract

Termofilik
mayaların izolasyonu için Aydın ili Buharkent ilçesi Bereket Jeotermal
tesislerinin çevresindeki toprak ve su örnekleri materyal olarak
kullanılmıştır. Elde edilen veriler ve analizler sonucunda, izolatların %98 ve
%99 gibi değişen oranlarda belirli türlerinin ITS1 ve ITS2 bölgeleriyle
homoloji gösterdiği tespit edilmiştir. 
Bu türlerin GenBank’ta kayıtlı Saccharomyces cerevisiae strain levure 23, Candida albicans,
Candida albicans strain
m74a, Cyberlindnera jadinii strain ATCC 22023, Saccharomyces
cerevisiae
, Kluyveromyces marxianus strain P2, Pichia manshurica strain h79b, Candida glabrata strain 86A adlı maya suşları olduğu belirlenmiştir.

References

  • Abdel-Sater M.A., Moubasher A.A., Soliman Z. Identification of three yeast species using the conventional and internal transcribed spacer region sequencing methods as first or second global record from human superficial infections, Mycoses, 59(10) 652-661 (2016).
  • Anonim. Kaplıcaya Sahip Belediyeler Birliği (2001).
  • Arthur H., Watson K. Thermal adaptation in yeast: growth temperatures, membrane lipid, and cytochrome composition of psychrophilic, mesophilic, and thermophilic yeasts, Journal of Bacteriology, 128 56–68 (1976).
  • Baker G.C., Gaffer S., Cowan A.D., Suharto A.R. Bacterial community analysis of Indonesian hot springs, FEMS Microbiology Letters, 200 103-109 (2001).
  • Charles P.E, Dalle F., Aube H., Doise J.M, Quenot J.P, Aho L.S, Chavanet P., Blettery B. Candida spp. colonization significance in critically ill medical patients: a prospective study, Intensive Care Medicine, 31(3) 393-400 (2005).
  • Choi G.W., Umb H.J., Kim Y., Kang H.w., Kim M., Chung B.W., Kim Y.H. Isolation and characterization of two soil derived yeasts for bioethanol production on Cassava starch, Biomass and Bioenergy, 34(8) 1223-1231 (2010).
  • Deacon J. The microbial world: Thermophilic microorganisms produced by institute of Cell and Molecular Biology. The University of Edinburgh, (http://helios.bto.ed.ac.uk/bto/microbes/thermo.htm.), (2007).
  • Dlauchy D., Tornai-Lehoczki J., Peter G. Restriction enzyme analysis of PCR amplified rDNA as a taxonomic tool in yeast identification, Systematic and Applied Microbiology, 22(3) 445-53 (1999).
  • El-Latif Hesham A., Wambui V., Henry Ogola J.O., Maina J.M. Phylogenetic analysis of isolated biofuel yeasts based on 5.8S-ITS rDNAand D1/D2 26S rDNA sequences, Journal of Genetic Engineering and Biotechnology, 12(1) 37-43 (2014).
  • Fernandez-Espinar M.T, Martorell R., De Llanos R., Querol A. Molecular methods to identify and characterize yeasts in food sand beverages. In: Yeasts in food and beveragesed: Querol A. and Fleet G (eds), Springer-Verlag, Berlin, Germany, p. 55-82, (2006).
  • Fitzpatric D.A., Logue M.E., Stajich J.E., Butler G. A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis, BMC Evolutionary Biology, 6(99) 1-15 (2006).
  • Genç T.T., Çıldır İ.N. Bozcaada üzüm çeşitleri üzerinde Non-Saccharomyces mayaların dağılımı, Biyoloji Bilimleri Araştırma Dergisi, 5(1) 115-120 (2012).
  • Gonz´alez-Hern´andez J.C., Perez E., Damian R.M., Chavez-Parga M.C. Isolation, molecular and fermentative characterization of a yeast used in ethanol production during mezcal elaboration, Revista Mexicana de Ingeniería Química, 11(3) 389-400 (2012).
  • Hierro A., Sun J., Rusnak A.S., Kim J., Prag G., Emr S.D., Hurley J.H. Structure of the ESCRT-II endosomal trafficking complex, Nature, 431(7005) 221-225 (2004).
  • Hoffman C.S., Winston F. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for trans formation of Escherichia coli, Gene, 57(2) 267–272 (1987).
  • Hundson H.J. Fungal Biology. Edward Amold Press, London, 6 158-75 (1987).
  • Kurtzman C.P., Robnett C.J. Relationships among genera of the Saccharomycotina (Ascomycota) from multigene phylogenetic analysis of type species, FEMS Yeast Research, 13(1) 23-33 (2013).
  • Madigan MT, Martinko JM, Parker J. Brock biology of microorganisms, 14th edn. Pearson Education Limited (2015). Lee B.H. Fundamentals of food biotechnolology, VCH Publishers, USA, p. 431, (1996).
  • Lopes M.B, Soden A., Martens A., Henschke P.A, Langridge P. Differentiation and species identification of yeasts using PCR, International Journal of Systematic Bacteriology, 48(1) 279-286 (1998).
  • Pfaller M.A., Diekema D.J. Rare and emerging opportunistic fungal pathogens: Concern for resistance beyond Candida albicans and Aspergillus fumigatus, Journal of Clinical Microbiology, 42(10) 4419-4431 (2004).
  • Redman R.S, Litvintseva A., Sheehan K.B., Henson J.M., Rodringuez R.J. Fungi from geothermal soils in Yellowstone National Park. Applied and Environmental Microbiology, 65 5193-7 (1999).
  • Schoch C.L., Seifert K.A., Huhndorf S., Robert V., Spouge J.L., Levesque C.A., Chen W., Consortium F.B. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi, Pnas, 109(16) 6241–6246 (2012).
  • Senses-Ergul Ş., Agoston R., Belak A., Deak T. Characterization of some yeasts isolated from foods by traditional and molecular tests, International Journal of Food Microbiology, 108(1) 120-124 (2006).
  • Shin K.S, Shin Y.K, Yoon J.H, Park Y.H. Candida thermophila sp. nov., a novel thermophilic yeast isolated from soil, International Journal of Systematic Evolutionary Microbiology, 51 2167–2170, (2001).
  • Šuranská H., Raspor P., Uroić K., Golić N., Kos B., Mihajlović S., Begović J., Šušković J., Topisirović L., Čadež N. Characterisation of the yeast and mould biota in traditional white pickled cheeses by culture-dependent and independent molecular techniques, Folia Microbiologica (Praha), 61(6) 455-463 (2016).
  • Tofalo R., Chaves-López C., DiFabio F., Schirone M., Felis G.E., Torriani S., Paparella A., Suzzi G. Molecular identification and osmotolerant profile of wine yeasts that ferment a high sugar grape must, International Journal of Food Microbiology, 130(3) 179-187 (2009).
  • Van den Burg B. Extremophiles as a source for novel enzymes, Current Opinion Microbiology, 6(3), 213-218 (2003).
  • Van Der Vossen J.M.B.M., Rahaoui H., De Nijs M.W.C.M.,Hartog B.J. PCR methods for tracing and detection of yeasts in the food chain. In: Yeasts in Food, Boekhout T, Robert V (eds), BayerleinGmbH, Neusass, Germany, p. 123-137, (2003).
  • Vaughan-Martini A. Reflections on the clasification of yeasts for different end-users in biotechnology, ecology, and medicine, International Microbiology, 6(3) 175-182 (2003).
  • White T.J., Bruns T., Lee S., Taylor J.W. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M.A.,Gelfand, D.H., Snissky, J.J., White, T.J. (Eds.), PCR protocols: A guide to method sand applications. AcademicPressInc.,NewYork, p. 315–322, (1990).
  • Zhang Y., Wu W.P., Hu D.M., Su Y.Y., Cai L. A new thermophilic species of Myceliophthora from China, Mycological Progress, 13(1)165–170 (2014).
There are 31 citations in total.

Details

Journal Section MYCOLOGY
Authors

H. Halil Bıyık

Esin Poyrazoğlu Çoban This is me

Yusuf Geroğlu This is me

İlgıt Kırgız This is me

Publication Date April 28, 2017
Published in Issue Year 2017 Volume: 8 Issue: 1

Cite

APA Bıyık, H. H., Poyrazoğlu Çoban, E., Geroğlu, Y., Kırgız, İ. (2017). Aydın İlinde Termofilik Çevreden İzole Edilen Mayaların Moleküler Tanısı. Mantar Dergisi, 8(1), 48-59. https://doi.org/10.15318/Fungus.2017127496

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