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Coronavirus: A Biochemical Approach

Year 2021, Volume: 6 Issue: 1, 66 - 77, 11.06.2021
https://doi.org/10.33484/sinopfbd.776394

Abstract

The purpose of this study is; to give information about the biological structure, metabolism and interaction of the Covid-19 agent virus with the defense system; to reveal the relationship between biochemical blood values and the defense system in Covid-19 cases and to update the data on preventing the damage that the virus may cause, in line with scientific developments. Relevant articles found by searching the keywords “SARS-CoV-2” and “Coronavirus” in Pubmed, Web of Science and Google Scholar databases and Google Search Engine were included in the study. This virus, called SARS-CoV-2, which originated in Vuhan, China and caused the disease called Covid-19, spread to almost all countries of the world and caused a high number of deaths in a very short time. Using the virus RNA, the infected cell begins to produce proteins that will keep the immune system at bay and help create new copies of the virus. For this reason, monitoring the disease and sharing information all over the world, epidemiological contact history, clinical features, biochemical tests in all blood and urine and other conditions are important evaluations for the treatments of the patient. It is imperative to follow the global situation and to make correct decisions according to the changes in epidemiology and to update the information of employees.

References

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  • Haksözü, M., Kılıç, S., & Saraç, F. (2020). Coronaviruses and SARS-COV-2. Turkish Journal of Medical Sciences, 50, 549-556. https://doi:10.3906/sag-2004-127
  • Inal, S. (2016). Middle East respiratory syndrome-coronavirus (MERS-CoV) enfeksiyonu: Ortadoğu solunum yetmezliği sendromu-koronavirüs enfeksiyonu. Okmeydanı Tıp Dergisi, 32, 37-45. https://doi:10.5222/otd.2016.037
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  • Ksiazek, T. G., Erdman, D., Goldsmith, C. S., Zaki, S. R., Peret, T., Emery, S., Tong, S., Urbani, C., Comer, C. J., Lim, W., Rollin, P. E., Dowell, S. F., Ling, A. E., Humphrey C. D., Shieh W. J., Guarner, J., Paddock, C. D., Rota, P., Fields, B., DeRisi, J., Yang, J. Y., Cox, N., Hughes, J. M., LeDuc, J. W., Bellini, W.J., & Anderson L. J. (2003). A novel coronavirus associated with severe acute respiratory syndrome. The New England Journal of Medicine, 348,1953-1966.
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  • Lurie, N., Saville, M., Hatchett, R., & Halton, J. (2020). Developing Covid-19 vaccines at pandemic speed. The New England Journal of Medicine, 382, 1969-1973. https://doi:10.1056/NEJMp2005630
  • Akbaba, M., Kurt, B., & Nazlıcan, E. (2014). Yeni koronavirüs salgını. Turkish Journal of Public Health, 12(3), 217-227. https://doi.org/10.20518/thsd.22944
  • Wu, C., Chen, X., Cai, Y., Xia, J., Zhou, X., Xu, S., Huang, H., Li Zhang, L., Xia Zhou, X., Du, C., Zhang, Y., Song, J., Wang, S., Chao, Y., Yang, Z., Xu, J., Zhou, X., Chen, D., Xiong, W., Xu, L., Zhou, F., Jiang, J., Bai, C., Zheng, J., & Song, Y. (2020). Risk factors associated with acute respiratory distress syndrome and death in patients with coronavirus disease 2019 pneumonia in Wuhan, China. JAMA internal medicine, 180(7), 934-943. doi:10.1001/jamainternmed.2020.0994
  • Smith, J. A., & Judd, J. (2020). COVID‐19: Vulnerability and the power of privilege in a pandemic. Health Promotion Journal of Australia, 31(2), 158–160. https://doi.org/10.1002/hpja.333
  • Wang, W., Liu, Z., Chen, Z., Huang, X., Xu, M, He, T., & Zhang, Z. (2020). The establishment of reference sequence for SARS-CoV2 and variation analysis. Journal of Medical Virology, 92(6), 667-674. https://doi:10.1002/jmv.25762
  • Emami, A., Javanmaridi, F., Pirbonyeh, N., & Akbari, A. (2020). Prevalence of underlying diseases in hospitalized patients with COVID-19: A systematic review and meta-analysis. Archives of Academic Emergency Medicine, 8(1), e35.
  • Tükek, M., & Alibeyoğlu, A. M. (2020). Olgularla Covid-19(1). İstanbul Tıp Kitabevi.
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  • Liu, Y., Gayle, AA., Wilder-Smith, A., & Rocklöv, J. (2020). The reproductive number of COVID-19 is higher compared to SARS coronavirus. Journal of Travel Medicine, 27(2), 1-4. https://doi:10.1093/jtm/taaa021
  • Memish, Z. A., Zumla, A. I., & Assiri, A. (2013). Middle East respiratory syndrome coronavirus infections in health care workers. The New England Journal of Medicine, 369(9), 884-886. https://doi:10.1056/NEJMc1308698
  • Patel, A., & Jernigan, D. B. (2020). Initalpublic health response and interim clinical guidance for the 2019 Novel Coronavirus Outbreak-United States. Morbidity and Mortality Weeakly Report, 69(5), 140-146. https://doi:10.15585/mmwr.mm6905e1
  • McIntosh, P. S. (2015). Coronaviruses, including Severe Acute Respiratory Syndrome (SARS) and Middle East Respiratory Syndrome (MERS) In: Bennett JE, Dolin R, Blaser MJ (eds). Principles and Practice of Infectious Diseases. 8th Edition. Philadelphia: Elsevier-Saunders, 1928-1936.
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  • Li, G., Fan, Y., & Lia, Y. (2020). Coronavirus infections and immune responses. Journal of Medical Virology, 92(4), 424-432. https://doi:10.1002/jmv.25685
  • Shang, J., Ye, G., & Wan, Y. (2020). Structural basis of receptor recognition by SARS-CoV-2. Nature, 581, 221–224. https://doi.org/10.1038/s41586-020-2179-y
  • Zhang, X., Cai, H., Hu, J., Lian, J., Gu, J., Zhang, S., Ye, C., Lu, Y., Jin. C., Yu, G., Jia, H., Zhang, Y., Sheng, J., Li, L., & Yang, Y. (2020). Epidemiological, clinical characteristics of cases of SARS-CoV-2 infection with abnormal imaging findings. International Journal of Infectious Diseases, 94, 81–87.
  • Zeng, W, Liu, G., & Ma, H. (2020). Biochemical characterization of SARSCoV-2 nucleocapsid protein. Biochemical and Biophysical Research Communications, 527(3), 618–623. https://doi:10.1016/j.bbrc.2020.04.136
  • D'Amico, F., Baumgart, D. C., Danese, S., & Peyrin-Biroulet, L. (2020). Diarrhea during COVID-19 infection: pathogenesis, epidemiology, prevention and management. Clinical Gastroenterology and Hepatology, 18(8), 1663-1672. https://doi:10.1016/j.cgh.2020.04.001
  • Hamming, I., Timens, W., Bulthuis, M. L., Lely, A. T., Navis, G., & Van Goor, H. (2004). Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. The Journal of Pathology, 203(2), 631-7. https://doi:10.1002/path.1570
  • Liu, F., Xu, A., Zhang, Y., Pan, K., Yu, W., & Zhang, J. (2020). Patients of COVID-19 may benefit from susutained Lopinavir combined regimen and the increase of Eosinophil may predict the outcome of COVİD-19 progression. International Journal of Infectious Diseases, 95, 183-191. https://doi:10.1016/j.ijid.2020.03.013
  • Netland, J., Meyerholz, D. K., Moore, S., Cassell, M., & Perlman, S. (2008). Severe acute respiratory syndrome coronavirus infection causes neuronal death in the absence of encephalitis in mice transgenic for human ACE2. Journal of Virology, 82(15), 7264-7275. https://doi:10.1128/JVI.00737-08
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  • Malı, Y. A. (2020). Properties of Coronavirus and SARS-CoV-2. The Malaysian Journal of Pathology, 42(1), 3-11.
  • Ahmed, T., Noman, M., Almatroudi, A., Shahid, M., Hurşid, M., Tarik, F., Tahir, M., Qamar, T., Yu, R., & Li, B. (2020) Coronavirus disease 2019 assosiated pneumonia in China: Current status and future prospects. Basel, Switzerland: Preprints Organization, https://doi.org/10.20944/preprints202002.0358.v3.
  • Güven, A., Gülmez, M., Beytut, E., & Erişir, M. (2003). Aterosklerotik farelerde kefir ve yoğurdun lipid peroksidasyonuna ve antioksidan enzimlere etkisi. Kafkas Üniversitesi Veteriner Fakültesi Dergisi, 9(1), 79-83.
  • Güven, A., & Alkış, K. (2018) Hiperkolesterolemi oluşturulmuş farelerde kefir ve simvastatin etkilerinin araştırılması. Caucasian Journal of Science, 5(2), 11-16.
  • Kamiloğlu, N. N., Beytut, E., Güven, A., & Altınsaat, Ç. (2006). Changes in the erythrocyte antioxidant system of off spring of dams treated with vitamin A and b–carotene during gestatio. Small Ruminant Research, 65, 142-148.
  • Şanlı, K. (2020). Influenza virüsü ve domuz gribi. Jinekoloji Obstretrik Pediatri Dergisi, 2(1), 4-12.
  • Karameşe, M. (2014). Adenovirus ile obezite arasındaki ilişkinin invitro olarak incelenmesi. (Tez no.379429) [Doktora Tezi, Atatürk Üniversitesi].
  • Çapan, N., Canbakan, S., Yeşiler, İ., Ertürk, A., Ofluoğlu, R., Şimşek, A., Çakmak, S., & Şipit, T. (2013). Influenza A (H1N1) virus enfeksiyonlu on olgunun klinik özellikleri. Solunum, 15(2), 115-119. https://doi:10.5152/solunum.2013.021
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Biyokimyasal Açıdan Koronavirüs

Year 2021, Volume: 6 Issue: 1, 66 - 77, 11.06.2021
https://doi.org/10.33484/sinopfbd.776394

Abstract

Bu çalışmanın amacı; Covid-19 etkeni virüsün biyolojik yapısı, metabolizması ve savunma sistemiyle etkileşimi hakkında bilgi vermek; Covid-19 vakalarında biyokimyasal kan değerleri ile savunma sistemi ilişkilerini ve virüsün yaratabileceği tahribatları engellemek konusundaki verileri bilimsel gelişmeler doğrultusunda güncelleyerek ortaya koymaktır. Pubmed, Web of Science ve Google Scholar veri tabanlarında ve Google Arama Motorunda “SARS-CoV-2” ve “Coronavirus” anahtar kelimeleri aranarak bulunan ilgili makaleler çalışma kapsamına alınmıştır. Çin'in Wuhan kentinde ortaya çıkmış ve Covid-19 adı verilen hastalığa yol açan SARS-CoV-2 olarak adlandırılan bu virüs, dünyanın neredeyse bütün ülkelerine yayılmış ve çok kısa bir sürede yüksek sayıda ölümlere neden olmuştur. Enfekte olan hücre, virüs RNA’sını kullanarak, bağışıklık sistemini uzak tutacak ve virüsün yeni kopyalarını oluşturmaya yardımcı olacak proteinler üretmeye başlar. Süreç dinamiktir ve yeni keşifler ve değişiklikler her an olabilir. Bu nedenle tüm dünyada hastalığın izlenmesi ve bilginin paylaşılması, epidemiyolojik temas öyküsü, klinik özellikler, tüm kan ve idrarda biyokimyasal testler ve diğer durumlar hastanın tedavisi için önemli değerlendirmelerdir. Küresel durumun izlenmesi ve epidemiyolojideki değişimlere göre yerinde ve doğru kararlar alınması ve çalışanlarının bilgilerini güncellemeleri zorunludur.

References

  • Hoşbul, T., & Şahiner, F. (2020). Genomic and biologic characteristics of SARSCoV-2 and other coronaviruses. Journal of Molecular Virology and Immunology, 1(1), 18-29. https://doi:10.46683/jmvi.2020.2
  • Haksözü, M., Kılıç, S., & Saraç, F. (2020). Coronaviruses and SARS-COV-2. Turkish Journal of Medical Sciences, 50, 549-556. https://doi:10.3906/sag-2004-127
  • Inal, S. (2016). Middle East respiratory syndrome-coronavirus (MERS-CoV) enfeksiyonu: Ortadoğu solunum yetmezliği sendromu-koronavirüs enfeksiyonu. Okmeydanı Tıp Dergisi, 32, 37-45. https://doi:10.5222/otd.2016.037
  • Chan, P., & Chan, M. C. (2013). Tracing the SARS-coronavirus. Journal of Thoracic Disease, 5(2), 118-21. https://doi:10.3978/j.issn.2072-1439.2013.06.19
  • Ksiazek, T. G., Erdman, D., Goldsmith, C. S., Zaki, S. R., Peret, T., Emery, S., Tong, S., Urbani, C., Comer, C. J., Lim, W., Rollin, P. E., Dowell, S. F., Ling, A. E., Humphrey C. D., Shieh W. J., Guarner, J., Paddock, C. D., Rota, P., Fields, B., DeRisi, J., Yang, J. Y., Cox, N., Hughes, J. M., LeDuc, J. W., Bellini, W.J., & Anderson L. J. (2003). A novel coronavirus associated with severe acute respiratory syndrome. The New England Journal of Medicine, 348,1953-1966.
  • Peiris, J. S., Lai, S. T., Poon, L. L., Guan, Y., Yam, L. Y. C., Lim, W., Nicholls, P. J., Yee, W. K. S., Yan, W. W., Cheung, M. T., Cheng, V. C. C., Chan, K. H., Tsang, D. N. C., Yung, R. W. H., Ng, T. K., & Yuen, K. Y. (2003). Coronavirus as a possible cause of severe acute respiratory syndrome. Lancet, 361, 1319-1325. https://doi:10.1016/s0140-6736(03)13077-2
  • McIntosh, K., & Peiris, J. (2009). Coronaviruses. Richman, D., Whitley, R., Hayden, F. (editors). Clinical Virology, 3. Press, 1155-1171.
  • Lurie, N., Saville, M., Hatchett, R., & Halton, J. (2020). Developing Covid-19 vaccines at pandemic speed. The New England Journal of Medicine, 382, 1969-1973. https://doi:10.1056/NEJMp2005630
  • Akbaba, M., Kurt, B., & Nazlıcan, E. (2014). Yeni koronavirüs salgını. Turkish Journal of Public Health, 12(3), 217-227. https://doi.org/10.20518/thsd.22944
  • Wu, C., Chen, X., Cai, Y., Xia, J., Zhou, X., Xu, S., Huang, H., Li Zhang, L., Xia Zhou, X., Du, C., Zhang, Y., Song, J., Wang, S., Chao, Y., Yang, Z., Xu, J., Zhou, X., Chen, D., Xiong, W., Xu, L., Zhou, F., Jiang, J., Bai, C., Zheng, J., & Song, Y. (2020). Risk factors associated with acute respiratory distress syndrome and death in patients with coronavirus disease 2019 pneumonia in Wuhan, China. JAMA internal medicine, 180(7), 934-943. doi:10.1001/jamainternmed.2020.0994
  • Smith, J. A., & Judd, J. (2020). COVID‐19: Vulnerability and the power of privilege in a pandemic. Health Promotion Journal of Australia, 31(2), 158–160. https://doi.org/10.1002/hpja.333
  • Wang, W., Liu, Z., Chen, Z., Huang, X., Xu, M, He, T., & Zhang, Z. (2020). The establishment of reference sequence for SARS-CoV2 and variation analysis. Journal of Medical Virology, 92(6), 667-674. https://doi:10.1002/jmv.25762
  • Emami, A., Javanmaridi, F., Pirbonyeh, N., & Akbari, A. (2020). Prevalence of underlying diseases in hospitalized patients with COVID-19: A systematic review and meta-analysis. Archives of Academic Emergency Medicine, 8(1), e35.
  • Tükek, M., & Alibeyoğlu, A. M. (2020). Olgularla Covid-19(1). İstanbul Tıp Kitabevi.
  • Lu, R., Yu, X., & Wang, W. (2012). Characterization of human coronavirus etiology in Chinese adults with adults with acute upper respiratory tract infection by real-time RT-PCR assays. Plos One, 7(6). https://doi:10.1371/journal.pone.0038638
  • Liu, Y., Gayle, AA., Wilder-Smith, A., & Rocklöv, J. (2020). The reproductive number of COVID-19 is higher compared to SARS coronavirus. Journal of Travel Medicine, 27(2), 1-4. https://doi:10.1093/jtm/taaa021
  • Memish, Z. A., Zumla, A. I., & Assiri, A. (2013). Middle East respiratory syndrome coronavirus infections in health care workers. The New England Journal of Medicine, 369(9), 884-886. https://doi:10.1056/NEJMc1308698
  • Patel, A., & Jernigan, D. B. (2020). Initalpublic health response and interim clinical guidance for the 2019 Novel Coronavirus Outbreak-United States. Morbidity and Mortality Weeakly Report, 69(5), 140-146. https://doi:10.15585/mmwr.mm6905e1
  • McIntosh, P. S. (2015). Coronaviruses, including Severe Acute Respiratory Syndrome (SARS) and Middle East Respiratory Syndrome (MERS) In: Bennett JE, Dolin R, Blaser MJ (eds). Principles and Practice of Infectious Diseases. 8th Edition. Philadelphia: Elsevier-Saunders, 1928-1936.
  • Shng, J., Ye, G., Shi, K., Wan, Y., Luo, C., Aihara, H., Geng, Q., Auerbach, A., & Li, F. (2020). SARS-CoV-2 tarafından reseptör tanımanın yapısal temeli. Doğa, 581, 221–224.
  • Li, G., Fan, Y., & Lia, Y. (2020). Coronavirus infections and immune responses. Journal of Medical Virology, 92(4), 424-432. https://doi:10.1002/jmv.25685
  • Shang, J., Ye, G., & Wan, Y. (2020). Structural basis of receptor recognition by SARS-CoV-2. Nature, 581, 221–224. https://doi.org/10.1038/s41586-020-2179-y
  • Zhang, X., Cai, H., Hu, J., Lian, J., Gu, J., Zhang, S., Ye, C., Lu, Y., Jin. C., Yu, G., Jia, H., Zhang, Y., Sheng, J., Li, L., & Yang, Y. (2020). Epidemiological, clinical characteristics of cases of SARS-CoV-2 infection with abnormal imaging findings. International Journal of Infectious Diseases, 94, 81–87.
  • Zeng, W, Liu, G., & Ma, H. (2020). Biochemical characterization of SARSCoV-2 nucleocapsid protein. Biochemical and Biophysical Research Communications, 527(3), 618–623. https://doi:10.1016/j.bbrc.2020.04.136
  • D'Amico, F., Baumgart, D. C., Danese, S., & Peyrin-Biroulet, L. (2020). Diarrhea during COVID-19 infection: pathogenesis, epidemiology, prevention and management. Clinical Gastroenterology and Hepatology, 18(8), 1663-1672. https://doi:10.1016/j.cgh.2020.04.001
  • Hamming, I., Timens, W., Bulthuis, M. L., Lely, A. T., Navis, G., & Van Goor, H. (2004). Tissue distribution of ACE2 protein, the functional receptor for SARS coronavirus. A first step in understanding SARS pathogenesis. The Journal of Pathology, 203(2), 631-7. https://doi:10.1002/path.1570
  • Liu, F., Xu, A., Zhang, Y., Pan, K., Yu, W., & Zhang, J. (2020). Patients of COVID-19 may benefit from susutained Lopinavir combined regimen and the increase of Eosinophil may predict the outcome of COVİD-19 progression. International Journal of Infectious Diseases, 95, 183-191. https://doi:10.1016/j.ijid.2020.03.013
  • Netland, J., Meyerholz, D. K., Moore, S., Cassell, M., & Perlman, S. (2008). Severe acute respiratory syndrome coronavirus infection causes neuronal death in the absence of encephalitis in mice transgenic for human ACE2. Journal of Virology, 82(15), 7264-7275. https://doi:10.1128/JVI.00737-08
  • Zhu, N., Zhang, D., Wang, W., Li, X., Yang, B., Song, J., Zha, X., Huang, B., Shi, W., Lu, R., Niu, P., Zhan, F., Ma, X., Wang, D., Xu, W., Wu, G., Gao, GF., & Tan, W. (2020). A novel coronavirus from patients with pneumonia in China. The New England Journal of Medicine, 382,727–733.
  • Malı, Y. A. (2020). Properties of Coronavirus and SARS-CoV-2. The Malaysian Journal of Pathology, 42(1), 3-11.
  • Ahmed, T., Noman, M., Almatroudi, A., Shahid, M., Hurşid, M., Tarik, F., Tahir, M., Qamar, T., Yu, R., & Li, B. (2020) Coronavirus disease 2019 assosiated pneumonia in China: Current status and future prospects. Basel, Switzerland: Preprints Organization, https://doi.org/10.20944/preprints202002.0358.v3.
  • Güven, A., Gülmez, M., Beytut, E., & Erişir, M. (2003). Aterosklerotik farelerde kefir ve yoğurdun lipid peroksidasyonuna ve antioksidan enzimlere etkisi. Kafkas Üniversitesi Veteriner Fakültesi Dergisi, 9(1), 79-83.
  • Güven, A., & Alkış, K. (2018) Hiperkolesterolemi oluşturulmuş farelerde kefir ve simvastatin etkilerinin araştırılması. Caucasian Journal of Science, 5(2), 11-16.
  • Kamiloğlu, N. N., Beytut, E., Güven, A., & Altınsaat, Ç. (2006). Changes in the erythrocyte antioxidant system of off spring of dams treated with vitamin A and b–carotene during gestatio. Small Ruminant Research, 65, 142-148.
  • Şanlı, K. (2020). Influenza virüsü ve domuz gribi. Jinekoloji Obstretrik Pediatri Dergisi, 2(1), 4-12.
  • Karameşe, M. (2014). Adenovirus ile obezite arasındaki ilişkinin invitro olarak incelenmesi. (Tez no.379429) [Doktora Tezi, Atatürk Üniversitesi].
  • Çapan, N., Canbakan, S., Yeşiler, İ., Ertürk, A., Ofluoğlu, R., Şimşek, A., Çakmak, S., & Şipit, T. (2013). Influenza A (H1N1) virus enfeksiyonlu on olgunun klinik özellikleri. Solunum, 15(2), 115-119. https://doi:10.5152/solunum.2013.021
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There are 47 citations in total.

Details

Primary Language English
Journal Section Reviews
Authors

Aysel Güven 0000-0001-7511-7105

Tülay Allahverdi 0000-0001-7723-7338

Özge Deniz Güven This is me 0000-0003-4539-9214

Publication Date June 11, 2021
Submission Date August 2, 2020
Published in Issue Year 2021 Volume: 6 Issue: 1

Cite

APA Güven, A., Allahverdi, T., & Güven, Ö. D. (2021). Coronavirus: A Biochemical Approach. Sinop Üniversitesi Fen Bilimleri Dergisi, 6(1), 66-77. https://doi.org/10.33484/sinopfbd.776394