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Isolation and molecular characterization of Bax Inhibitor-1 Gene from Grapevine (Vitis vinifera cv. Sultanina)

Year 2012, , 249 - 254, 01.09.2012
https://doi.org/10.20289/zfdergi.69696

Abstract

References

  • Bolduc, N., and L. F. Brisson, 2002. Antisense down regulation of NtBI-1 in tobacco BY-2 cells induces accelerated cell death upon carbon starvation. FEBS Letters 532(1‚Äì2): 111-114.
  • Bolduc, N., M. Ouellet, F. Pitre, and L. Brisson, 2003. Molecular characterization of two plant BI-1 homologues which suppress Bax-induced apoptosis in human 293 cells. Planta 216(3): 377- 386.
  • Bras, M., B. Queenan and S.A. Susin, 2005. Programmed Cell Death via Mitochondria: Different Modes of Dying. Biochemistry (Mosc) 70(2): 231-239.
  • Datta, R. S., C. Meacham, B. Samad, C. Neyer and K. Sjalander,
  • Chae, H.-J., N. Ke, H.-R. Kim, S. Chen, A. Godzig, M. Dickman and J.C. Reed, 2003. Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene 323(0): 101-113.
  • Coupe, S. A., L. M. Watson, D.J. Ryan, T.T. Pinkley and J.R. Eason, 2004. Molecular analysis of programmed cell death during senescence in Arabidopsis thaliana and Brassica oleracea: cloning broccoli LSD1, Bax inhibitor and serine palmitoyltransferase homologues. Journal of Experimental Botany 55(394): 59-68.
  • Danon, A., V. Delorme, N. Mailhac and P. Gallois, 2000. Plant programmed cell death: A common way to die. Plant Physiology and Biochemistry 38(9): 647-655. 2009. Berkeley PHOG: PhyloFacts orthology group prediction web server. Nucleic Acids Research 37(suppl 2): W84-W89.
  • Davies, C. and S.P. Robinson, 1996. Sugar Accumulation in Grape Berries (Cloning of Two Putative Vacuolar Invertase cDNAs and Their Expression in Grapevine Tissues). Plant Physiology 111(1): 275-283.
  • Eichmann, R., H. Schultheiss, K.H. Kogel and R. Hückelhoven, 2004. The Barley Apoptosis Suppressor Homologue Bax Inhibitor-1 Compromises Nonhost Penetration Resistance of Barley to the Inappropriate Pathogen Blumeria graminis f. sp. tritici. Molecular Plant-Microbe Interactions 17(5): 484-490.
  • Ellis, H. M. and H. R. Horvitz, 1986. Genetic control of programmed cell death in the nematode C. elegans. Cell 44(6): 817-829.
  • Hengartner, M. O., R. Ellis and R. Horvitz, 1992. Caenorhabditis elegans gene ced-9 protects cells from programmed cell death. Nature 356(6369): 494-499.
  • Henke, N., D. A. Lisak, L. Schneider, J. Habicht, M. Pergande and A. Methner, 2011. The ancient cell death suppressor BAX inhibitor-1. Cell Calcium 50(3): 251-260.
  • Hückelhoven, R., 2004. BAX Inhibitor-1, an ancient cell death suppressor in animals and plants with prokaryotic relatives. Apoptosis 9(3): 299-307.
  • Ihara-Ohori, Y., M. Nagano, S. Muto, H. Uchimiya and M. Kawai- Yamada, 2007. Cell Death Suppressor Arabidopsis Bax Inhibitor-1 Is Associated with Calmodulin Binding and Ion Homeostasis. Plant Physiology 143(2): 650-660.
  • Isbat, M., N. Zeba, S.R. Kim and C.B. Hong, 2009. A BAX inhibitor-1 gene in Capsicum annuum is induced under various abiotic stresses and endows multi-tolerance in transgenic tobacco. Journal of Plant Physiology 166(15): 1685-1693.
  • Kacprzyk, J., C. T. Daly and P.F. McCabe, 2011. The Botanical Dance of Death: Programmed Cell Death in Plants. Advances in Botanical Research. K. Jean-Claude and D. Michel, Academic Press. Volume 60: 69-261.
  • Kawai, M., L. Pan, J.C. Reed and H. Uchimia, 1999. Evolutionally conserved plant homologue of the Bax Inhibitor-1 (BI-1) gene capable of suppressing Bax-induced cell death in yeast. FEBS Letters 464(3): 143-147.
  • Kawai, M., P. K. Samarajeewa, R.A. Barrero, M. Nishiguchi and H. Uchimiya, 1998. Cellular dissection of the degradation pattern of cortical cell death during aerenchyma formation of rice roots. Planta 204(3): 277-287.
  • Kawai-Yamada, M., Y. Ohori and H. Uchimiya, 2004. Dissection of Arabidopsis Bax Inhibitor-1 Suppressing Bax "Hydrogen Peroxide and Salicylic Acid" Induced Cell Death. The Plant Cell Online 16(1): 21-32.
  • Lacomme, C. and S. Santa Cruz, 1999. Bax-induced cell death in tobacco is similar to the hypersensitive response. Proceedings of the National Academy of Sciences 96(14): 7956-7961.
  • Lockshin, R. A. and Z. Zakeri, 2004. Apoptosis, autophagy, and more. The International Journal of Biochemistry & Cell Biology 36(12): 2405-2419.
  • Matsumura, H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, H. Uchimiya and R. Terauchi, 2003. Overexpression of Bax inhibitor suppresses the fungal elicitor- induced cell death in rice (Oryza sativa L.) cells. The Plant Journal 33(3): 425-434.
  • Nakashima, T., T. Sekiguchi, A. Kuraoka, K. Fukushima, Y. Shibata, S. Komiyama and T. Nishimoto, 1993. Molecular cloning of a human cDNA encoding a novel protein, DAD1, whose defect causes apoptotic cell death in hamster BHK21 cells. Molecular and Cellular Biology 13(10): 6367-6374.
  • Orzaez, D. and A. Granell, 1997. The plant homologue of the defender against apoptotic death gene is down-regulated during senescence of flower petals. FEBS Letters 404(2‚Äì3): 275-278.
  • Pecorino, L., 2008. Apoptosis. Molecular Biology of Cancer - Mechanisms Targets and Therapeutics. London, Oxford: 137-160.
  • Pennell, R. and C. Lamb, 1997. Programmed Cell Death in Plants. The Plant Cell 9: 1157-1168.
  • Reape, T. J., E. M. Molony and P.F. McCabe, 2008. Programmed cell death in plants: distinguishing between different modes. Journal of Experimental Botany 59(3): 435-444.
  • Samarajeewa, P. K., R. A. Barrero, C. Umeda-Hara, M. Kawai and H. Uchimiya, 1999. Cortical cell death, cell proliferation, macromolecular movements and Tip1; expression pattern in roots of rice (Oryza sativa; L.) under NaCl stress. Planta 207(3): 354-361.
  • Sanchez, P., M. De Torres Zabala and M. Grant, 2000. AtBI-1, a plant homologue of Bax Inhibitor-1, suppresses Bax-induced cell death in yeast and is rapidly upregulated during wounding and pathogen challenge. The Plant Journal 21(4): 393-399.
  • Watanabe, N. and E. Lam, 2006. Arabidopsis Bax inhibitor-1 functions as an attenuator of biotic and abiotic types of cell death. The Plant Journal 45(6): 884-894.
  • Watanabe, N. and E. Lam, 2008. Arabidopsis bax inhibitor-1: A rheostat for ER stress-induced programmed cell death. Plant Signaling & Behavior 3(8): 564-566.
  • Xu, Q. and J. C. Reed, 1998. Bax Inhibitor-1, a Mammalian Apoptosis Suppressor Identified by Functional Screening in Yeast. Molecular Cell 1(3): 337-346.

Asmada (Vitis vinifera cv. Sultani Çekirdeksiz) Bax İnhibitor-1 Geninin İzolasyonu ve Moleküler Karakterizasyonu

Year 2012, , 249 - 254, 01.09.2012
https://doi.org/10.20289/zfdergi.69696

Abstract

P rogramlanmış hücre ölümü (PCD) canlılarda, gelişmede ve çevresel stres faktörlerinin etkisi ile zarar görmüş hücrelerin elimine edilmesinde önemli bir fizyolojik olaydır. Bax inhibitor-1 (BI-1) proteininin hücre ölümünü engellediği ve ökaryotlarda yüksek oranda korunduğu gösterilmiştir. Bu çalışmada, Vitis vinifera cv. Sultani Çekirdeksiz çeşidinin üzüm tanelerinden gen izole edilmiş ve VvBI-1 olarak adlandırılarak gen bankasına kayıt altına alınmıştır. Olası VvBI-1 geninin protein kodlayan kısmı 747 bç uzunluğundadır ve protein büyüklüğü de 248 aa olarak bulunmuştur. VvBI-1 protein dizisinin 27,290 kDa büyüklüğünde olduğu ve olası izoelektrik noktasının da 8,62 olduğu öngörülmüştür. Farklı gelişme dönemlerinde hasat edilmiş üzüm tanelerinden semi quantitative RT-PCR analizi ile VvBI-1 geninin ifade profili çıkarılmış ve VvBI-1 ifadesinin yüksek oranda ve tüm gelişme dönemlerinde var olduğu gözlemlenmiştir

References

  • Bolduc, N., and L. F. Brisson, 2002. Antisense down regulation of NtBI-1 in tobacco BY-2 cells induces accelerated cell death upon carbon starvation. FEBS Letters 532(1‚Äì2): 111-114.
  • Bolduc, N., M. Ouellet, F. Pitre, and L. Brisson, 2003. Molecular characterization of two plant BI-1 homologues which suppress Bax-induced apoptosis in human 293 cells. Planta 216(3): 377- 386.
  • Bras, M., B. Queenan and S.A. Susin, 2005. Programmed Cell Death via Mitochondria: Different Modes of Dying. Biochemistry (Mosc) 70(2): 231-239.
  • Datta, R. S., C. Meacham, B. Samad, C. Neyer and K. Sjalander,
  • Chae, H.-J., N. Ke, H.-R. Kim, S. Chen, A. Godzig, M. Dickman and J.C. Reed, 2003. Evolutionarily conserved cytoprotection provided by Bax Inhibitor-1 homologs from animals, plants, and yeast. Gene 323(0): 101-113.
  • Coupe, S. A., L. M. Watson, D.J. Ryan, T.T. Pinkley and J.R. Eason, 2004. Molecular analysis of programmed cell death during senescence in Arabidopsis thaliana and Brassica oleracea: cloning broccoli LSD1, Bax inhibitor and serine palmitoyltransferase homologues. Journal of Experimental Botany 55(394): 59-68.
  • Danon, A., V. Delorme, N. Mailhac and P. Gallois, 2000. Plant programmed cell death: A common way to die. Plant Physiology and Biochemistry 38(9): 647-655. 2009. Berkeley PHOG: PhyloFacts orthology group prediction web server. Nucleic Acids Research 37(suppl 2): W84-W89.
  • Davies, C. and S.P. Robinson, 1996. Sugar Accumulation in Grape Berries (Cloning of Two Putative Vacuolar Invertase cDNAs and Their Expression in Grapevine Tissues). Plant Physiology 111(1): 275-283.
  • Eichmann, R., H. Schultheiss, K.H. Kogel and R. Hückelhoven, 2004. The Barley Apoptosis Suppressor Homologue Bax Inhibitor-1 Compromises Nonhost Penetration Resistance of Barley to the Inappropriate Pathogen Blumeria graminis f. sp. tritici. Molecular Plant-Microbe Interactions 17(5): 484-490.
  • Ellis, H. M. and H. R. Horvitz, 1986. Genetic control of programmed cell death in the nematode C. elegans. Cell 44(6): 817-829.
  • Hengartner, M. O., R. Ellis and R. Horvitz, 1992. Caenorhabditis elegans gene ced-9 protects cells from programmed cell death. Nature 356(6369): 494-499.
  • Henke, N., D. A. Lisak, L. Schneider, J. Habicht, M. Pergande and A. Methner, 2011. The ancient cell death suppressor BAX inhibitor-1. Cell Calcium 50(3): 251-260.
  • Hückelhoven, R., 2004. BAX Inhibitor-1, an ancient cell death suppressor in animals and plants with prokaryotic relatives. Apoptosis 9(3): 299-307.
  • Ihara-Ohori, Y., M. Nagano, S. Muto, H. Uchimiya and M. Kawai- Yamada, 2007. Cell Death Suppressor Arabidopsis Bax Inhibitor-1 Is Associated with Calmodulin Binding and Ion Homeostasis. Plant Physiology 143(2): 650-660.
  • Isbat, M., N. Zeba, S.R. Kim and C.B. Hong, 2009. A BAX inhibitor-1 gene in Capsicum annuum is induced under various abiotic stresses and endows multi-tolerance in transgenic tobacco. Journal of Plant Physiology 166(15): 1685-1693.
  • Kacprzyk, J., C. T. Daly and P.F. McCabe, 2011. The Botanical Dance of Death: Programmed Cell Death in Plants. Advances in Botanical Research. K. Jean-Claude and D. Michel, Academic Press. Volume 60: 69-261.
  • Kawai, M., L. Pan, J.C. Reed and H. Uchimia, 1999. Evolutionally conserved plant homologue of the Bax Inhibitor-1 (BI-1) gene capable of suppressing Bax-induced cell death in yeast. FEBS Letters 464(3): 143-147.
  • Kawai, M., P. K. Samarajeewa, R.A. Barrero, M. Nishiguchi and H. Uchimiya, 1998. Cellular dissection of the degradation pattern of cortical cell death during aerenchyma formation of rice roots. Planta 204(3): 277-287.
  • Kawai-Yamada, M., Y. Ohori and H. Uchimiya, 2004. Dissection of Arabidopsis Bax Inhibitor-1 Suppressing Bax "Hydrogen Peroxide and Salicylic Acid" Induced Cell Death. The Plant Cell Online 16(1): 21-32.
  • Lacomme, C. and S. Santa Cruz, 1999. Bax-induced cell death in tobacco is similar to the hypersensitive response. Proceedings of the National Academy of Sciences 96(14): 7956-7961.
  • Lockshin, R. A. and Z. Zakeri, 2004. Apoptosis, autophagy, and more. The International Journal of Biochemistry & Cell Biology 36(12): 2405-2419.
  • Matsumura, H., S. Nirasawa, A. Kiba, N. Urasaki, H. Saitoh, M. Ito, M. Kawai-Yamada, H. Uchimiya and R. Terauchi, 2003. Overexpression of Bax inhibitor suppresses the fungal elicitor- induced cell death in rice (Oryza sativa L.) cells. The Plant Journal 33(3): 425-434.
  • Nakashima, T., T. Sekiguchi, A. Kuraoka, K. Fukushima, Y. Shibata, S. Komiyama and T. Nishimoto, 1993. Molecular cloning of a human cDNA encoding a novel protein, DAD1, whose defect causes apoptotic cell death in hamster BHK21 cells. Molecular and Cellular Biology 13(10): 6367-6374.
  • Orzaez, D. and A. Granell, 1997. The plant homologue of the defender against apoptotic death gene is down-regulated during senescence of flower petals. FEBS Letters 404(2‚Äì3): 275-278.
  • Pecorino, L., 2008. Apoptosis. Molecular Biology of Cancer - Mechanisms Targets and Therapeutics. London, Oxford: 137-160.
  • Pennell, R. and C. Lamb, 1997. Programmed Cell Death in Plants. The Plant Cell 9: 1157-1168.
  • Reape, T. J., E. M. Molony and P.F. McCabe, 2008. Programmed cell death in plants: distinguishing between different modes. Journal of Experimental Botany 59(3): 435-444.
  • Samarajeewa, P. K., R. A. Barrero, C. Umeda-Hara, M. Kawai and H. Uchimiya, 1999. Cortical cell death, cell proliferation, macromolecular movements and Tip1; expression pattern in roots of rice (Oryza sativa; L.) under NaCl stress. Planta 207(3): 354-361.
  • Sanchez, P., M. De Torres Zabala and M. Grant, 2000. AtBI-1, a plant homologue of Bax Inhibitor-1, suppresses Bax-induced cell death in yeast and is rapidly upregulated during wounding and pathogen challenge. The Plant Journal 21(4): 393-399.
  • Watanabe, N. and E. Lam, 2006. Arabidopsis Bax inhibitor-1 functions as an attenuator of biotic and abiotic types of cell death. The Plant Journal 45(6): 884-894.
  • Watanabe, N. and E. Lam, 2008. Arabidopsis bax inhibitor-1: A rheostat for ER stress-induced programmed cell death. Plant Signaling & Behavior 3(8): 564-566.
  • Xu, Q. and J. C. Reed, 1998. Bax Inhibitor-1, a Mammalian Apoptosis Suppressor Identified by Functional Screening in Yeast. Molecular Cell 1(3): 337-346.
There are 32 citations in total.

Details

Primary Language Turkish
Journal Section Articles
Authors

Birsen Çakır This is me

Publication Date September 1, 2012
Submission Date November 25, 2015
Published in Issue Year 2012

Cite

APA Çakır, B. (2012). Asmada (Vitis vinifera cv. Sultani Çekirdeksiz) Bax İnhibitor-1 Geninin İzolasyonu ve Moleküler Karakterizasyonu. Journal of Agriculture Faculty of Ege University, 49(3), 249-254. https://doi.org/10.20289/zfdergi.69696

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