Araştırma Makalesi
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Y-kromozomu 17 STR markırının Türkiye’deki polimorfizmi

Yıl 2016, Cilt: 30 Sayı: 3, 213 - 221, 31.12.2016
https://izlik.org/JA89FK77XX

Öz

AMAÇ: Adli araştırmalarda, erkek ve kadın DNA örnekleri genellikle karışım halde bulunurlar. Bu tür örneklerin tiplendirilmesinde Y-STR kullanılmaktadır. Bu çalışmanın amacı Türkiye populasyonuna ait homojen dağılımın gösteren bir Y-STR haplotip veri tabanını oluşturmak ve diğer dünya popülasyonlarında önceden yapılmış Y-STR sonuçlarıyla karşılaştırmaktır. YÖNTEM: Kan veya ağız içi sürüntü örnekleri 218 sağlıklı, aralarında akrabalık ilişkisi bulunmayan ve çalışmaya gönüllü katılmayı kabul eden Türkiye’deki erkek bireylerden alınmıştır. 17 Y-STR lokuslarının haplotip ve alel sıkılıkları AmpFlSTR® Yfiler™ PCR Amplification Kiti kullanılarak çoğaltıldı ve ABI 3130 cihazında analiz edildi. Gen ve haplotip alel sıklıkları Arlequin Software 3.01 kullanılarak hesaplandı. Moleküler varyans analiz AMOVA sonuçları YHRD çevrimiçi araçları kullanılarak RST şeklinde değerlendirildi. BULGULAR: Türkiye popülasyonunda 218 örnekte aynı haplotipe rastlanmadı. En yüksek gen çeşitliliği DYS385 a /b lokusunda görülürken ve en düşük DYS391 lokusunda gözlendi. Çalışılan popülasyona en yakın popülasyonlar sırasıyla Güneydoğu Anadolu, Kıbrıslı Türkler ve Çukurova popülasyonları oldu. SONUÇ: Bu çalışma, adli uygulamalarda kullanılan yüksek ayrım gücüne sahip ve 17 Y-STR lokusunun Türk popülasyonuna ait son verilerini içermektedir.

Kaynakça

  • Aras B, Polat RK. Turkey and the Middle East: frontiers of the new geographic imagination. Australian Journal of Inter- national Affairs 2007; 61 4 :471-88.
  • Kaya I. Social Theory and Later Modernities: The Turkish Experience. Liverpool University Press. 2004;57-8.
  • Underhill PA, Kivisild T. Use of Y chromosome and mito- chondrial DNA population structure in tracing human migra- tions. Annu Rev Genet 2007;41:539-64.
  • Roewer L, Kayser M, de Knijff P, Anslinger K, Betz A, Caglià A, Corach D, Füredi S, Henke L, Hidding M et al. A new method for the evaluation of matches in non-recombining genomes: application to Y-chromosomal short tandem repeat STR hap- lotypes in European males. Forensic Sci Int 2000;114:31-43.
  • Roewer L, Krawczak M, Willuweit S, Nagy M, Alves C, Amor- im A, Anslinger K, Augustin C, Betz A, Bosch E et al. Online ref- erence database of European Y-chromosomal short tandem repeat STR haplotypes. Forensic Sci Int 2001;118:103-11.
  • Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from fo- rensic material. Biotechniques 1991;10 4 :506-13.
  • Gusmão L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler-Smith C et al. DNA Commission of the International Society of Forensic Genet- ics ISFG : an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int 2006;157:187-97.
  • Nei M. Molecular Evolutionary Genetics, Columbia Univer- sity Press, New York,1987;176-9.
  • Kovatsi L, Saunier J, Irwin JA. Population genetics of Y- chromosome STRs in a population of Northern Greeks. Fo- rensic Sci Int Genetics 2009;4 1 :e21-2.
  • Fernandes AT, Gonçalves R, Gomes S, Filon D, Nebel A, Faerman M, Brehm A. Y-chromosomal STRs in two popula- tions from Israel and the Palestinian Authority Area: Christian and Muslim Arabs. Forensic Sci Int Genet 2011 Nov;5 5 :561-2.
  • Budowle B, Ge J, Aranda XG, Planz JV, Eisenberg AJ, Chakraborty R. Texas population substructure and its impact on estimating the rarity of Y STR haplotypes from DNA evi- dence. J Forensic Sci 2009;54 5 :1016-21.
  • Coble MD, Hill CR, Butler JM. Haplotype data for 23 Y- chromosome markers in four U.S. population groups Foren- sic Sci Int Genet 2013;7 3 :e66-8.
  • Jakovski Z, Nikolova K, Jankova Ajanovska R, Marjanovic D, Pojskic N, Janeska B. Genetic data for 17 Y-chromosomal STR loci in Macedonians in the Republic of Macedonia, Foren- sic Sci Int Genet 2011;5 4 :e108-11.
  • Spiroski M, Arsov T, Kruger C, Willuweit S, Roewer L. Y-chromosomal STR haplotypes in Macedonian population samples. Forensic Sci Int 2005;148 1 :69-73.
  • Teralı K, Zorlu T, Bulbul O, Gurkan C. Population Genetics of 17 Y-STR Markers in Turkish Cypriots from Cyprus. Foren- sic Sci Int Genet 2014;5 10 :e1-3.
  • Kim YJ, Shin DJ, Kim JM, Jin HJ, Kwak KD, Han MS, Choi SK, Kim W. Y-chromosome STR haplotype profiling in the Ko- rean population. Forensic Sci Int 2001;115 3 :231-7.
  • Serin A, Canan H, Alper B, Sertdemir Y. Haplotype fre- quencies of 17 Y-chromosomal short tandem repeat loci from the Cukurova region of Turkey. Croat Med J 2011;52:703-8.
  • Ozbas - Gerceker F, Bozman N, Arslan A, Serin A. Popula- tion Data for 17 Y-STRs in Samples from Southeastern Anato- lia Region of Turkey, Int. J. Hum. Genet 2013;13:105-11.
  • Kayser M, Brauer S, Willuweit S, Schädlich H, Batzer MA, Zawacki J, Prinz M, Roewer L, Stoneking M. Online Y-Chro- mosomal Short Tandem Repeat Haplotype Reference Data- base YHRD for U.S. Populations. J Forensic Sci 2002;47:513-9.
  • Asicioglu F, Akyuz F, Cetinkaya U, Canli MA. Allele and haplotype frequencies of Y-short tandem repeat loci in Tur- key. Croat Med J 2003;44:310-4.
  • Cinnioğlu C, King R, Kivisild T, Kalfoğlu E, Atasoy S, Caval- leri GL, Lillie AS, Roseman CC, Lin AA, Prince K et al. Excavat- ing Y-chromosome haplotype strata in Anatolia. Hum Genet ;114 2 :127-48.
  • Cakır AH, Celebioglu A, Yardımcı E. Y-STR haplo- types in Central Anatolia region of Turkey. Forensic Sci Int ;144:59-64.
  • Donbak L, Bajanowski T, Brinkmann B, Hohoff C. Y-STR haplotypes in populations from the Eastern Mediterranean region of Turkey. Int J Legal Med 2006;120:395-6.
  • Alakoc YD, Gokcumen O, Tug A, Gultekin T, Gulec E and Schurr TG. Y-chromosome and autosomal STR diversity in four proximate settlements in Central Anatolia. Forensic Sci Int Genet 2010;4 5 :135-7.
  • Rustamov A, Gumus G, Karabulut HG, Elhan AH, Kadikiran A and Bökesoy I. Y-STR polymorphism in Central Anatolian Region of Turkey. Forensic Sci Int 2004;139 2-3 :227-30.
  • Calafell F, Underhill P, Tolun A, Angelicheva D, Kalaydjieva L. From Asia to Europe: Mitochondrial DNA sequence variability in Bulgarians and Turks. Ann Hum Genet 1996;60 1 :35-49.
  • Comas D, Calafell F, Mateu E, Pérez-Lezaun A, Bosch E, Martínez-Arias R, Clarimon J, Facchini F, Fiori G, Luiselli D et al. Trading genes along the silk road: mtDNA sequences and the origin of central Asian populations. Am J Hum Genet 1998;63 6 :1824-38.
  • Myres NM, Ekins JE, Lin AA, Cavalli-Sforza LL, Woodward SR and Underhill PA. Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405. Croat Med J 2007;48:450-9.
  • Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK. Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 2006;51:64-75.

Polymorphism of 17 Y-chromosome STR markers in Turkiye

Yıl 2016, Cilt: 30 Sayı: 3, 213 - 221, 31.12.2016
https://izlik.org/JA89FK77XX

Öz

OBJECTIVE: Y- STR typing is useful forensic investigation tool as it often involves a mixture of male and female DNA. The aims of the present study were to type 17 Y-STR loci in order to establish a proper Y-STR haplotype database with homogenous distribution of the Turkish population and compare our results with previously published Y-STR researches about Turkish and other worldwide populations. METHODS: The blood or buccal swab samples were collected from 218 healthy, unrelated male individuals in Turkey with their informed consent. DNA samples were amplified using the 17 YSTR loci AmpFlSTR Y-filer Amplification Kit and analyzed on ABI 3130 both Applied Biosystems . Haplotype frequencies were estimated by gene counting. Gene / haplotype diversities and allele frequencies were calculated using the Arlequin Software 3.01. Analyses of Molecular Variance AMOVA results were assessed in the form of RST values using the YHRD online tool. RESULTS: Among 218 samples of Turkey dataset, all of the haplotypes were unique. The highest gene diversity was determined at DYS385 a / b and the lowest was at DYS391 locus. The closest populations were Southeastern Anatolia, Turkish Cypriot and Cukurova populations respectively. CONCLUSION: This study indicates recent population data of 17 YSTR markers in Turkish population with high discrimination power for forensic applications.

Kaynakça

  • Aras B, Polat RK. Turkey and the Middle East: frontiers of the new geographic imagination. Australian Journal of Inter- national Affairs 2007; 61 4 :471-88.
  • Kaya I. Social Theory and Later Modernities: The Turkish Experience. Liverpool University Press. 2004;57-8.
  • Underhill PA, Kivisild T. Use of Y chromosome and mito- chondrial DNA population structure in tracing human migra- tions. Annu Rev Genet 2007;41:539-64.
  • Roewer L, Kayser M, de Knijff P, Anslinger K, Betz A, Caglià A, Corach D, Füredi S, Henke L, Hidding M et al. A new method for the evaluation of matches in non-recombining genomes: application to Y-chromosomal short tandem repeat STR hap- lotypes in European males. Forensic Sci Int 2000;114:31-43.
  • Roewer L, Krawczak M, Willuweit S, Nagy M, Alves C, Amor- im A, Anslinger K, Augustin C, Betz A, Bosch E et al. Online ref- erence database of European Y-chromosomal short tandem repeat STR haplotypes. Forensic Sci Int 2001;118:103-11.
  • Walsh PS, Metzger DA, Higuchi R. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from fo- rensic material. Biotechniques 1991;10 4 :506-13.
  • Gusmão L, Butler JM, Carracedo A, Gill P, Kayser M, Mayr WR, Morling N, Prinz M, Roewer L, Tyler-Smith C et al. DNA Commission of the International Society of Forensic Genet- ics ISFG : an update of the recommendations on the use of Y-STRs in forensic analysis. Forensic Sci Int 2006;157:187-97.
  • Nei M. Molecular Evolutionary Genetics, Columbia Univer- sity Press, New York,1987;176-9.
  • Kovatsi L, Saunier J, Irwin JA. Population genetics of Y- chromosome STRs in a population of Northern Greeks. Fo- rensic Sci Int Genetics 2009;4 1 :e21-2.
  • Fernandes AT, Gonçalves R, Gomes S, Filon D, Nebel A, Faerman M, Brehm A. Y-chromosomal STRs in two popula- tions from Israel and the Palestinian Authority Area: Christian and Muslim Arabs. Forensic Sci Int Genet 2011 Nov;5 5 :561-2.
  • Budowle B, Ge J, Aranda XG, Planz JV, Eisenberg AJ, Chakraborty R. Texas population substructure and its impact on estimating the rarity of Y STR haplotypes from DNA evi- dence. J Forensic Sci 2009;54 5 :1016-21.
  • Coble MD, Hill CR, Butler JM. Haplotype data for 23 Y- chromosome markers in four U.S. population groups Foren- sic Sci Int Genet 2013;7 3 :e66-8.
  • Jakovski Z, Nikolova K, Jankova Ajanovska R, Marjanovic D, Pojskic N, Janeska B. Genetic data for 17 Y-chromosomal STR loci in Macedonians in the Republic of Macedonia, Foren- sic Sci Int Genet 2011;5 4 :e108-11.
  • Spiroski M, Arsov T, Kruger C, Willuweit S, Roewer L. Y-chromosomal STR haplotypes in Macedonian population samples. Forensic Sci Int 2005;148 1 :69-73.
  • Teralı K, Zorlu T, Bulbul O, Gurkan C. Population Genetics of 17 Y-STR Markers in Turkish Cypriots from Cyprus. Foren- sic Sci Int Genet 2014;5 10 :e1-3.
  • Kim YJ, Shin DJ, Kim JM, Jin HJ, Kwak KD, Han MS, Choi SK, Kim W. Y-chromosome STR haplotype profiling in the Ko- rean population. Forensic Sci Int 2001;115 3 :231-7.
  • Serin A, Canan H, Alper B, Sertdemir Y. Haplotype fre- quencies of 17 Y-chromosomal short tandem repeat loci from the Cukurova region of Turkey. Croat Med J 2011;52:703-8.
  • Ozbas - Gerceker F, Bozman N, Arslan A, Serin A. Popula- tion Data for 17 Y-STRs in Samples from Southeastern Anato- lia Region of Turkey, Int. J. Hum. Genet 2013;13:105-11.
  • Kayser M, Brauer S, Willuweit S, Schädlich H, Batzer MA, Zawacki J, Prinz M, Roewer L, Stoneking M. Online Y-Chro- mosomal Short Tandem Repeat Haplotype Reference Data- base YHRD for U.S. Populations. J Forensic Sci 2002;47:513-9.
  • Asicioglu F, Akyuz F, Cetinkaya U, Canli MA. Allele and haplotype frequencies of Y-short tandem repeat loci in Tur- key. Croat Med J 2003;44:310-4.
  • Cinnioğlu C, King R, Kivisild T, Kalfoğlu E, Atasoy S, Caval- leri GL, Lillie AS, Roseman CC, Lin AA, Prince K et al. Excavat- ing Y-chromosome haplotype strata in Anatolia. Hum Genet ;114 2 :127-48.
  • Cakır AH, Celebioglu A, Yardımcı E. Y-STR haplo- types in Central Anatolia region of Turkey. Forensic Sci Int ;144:59-64.
  • Donbak L, Bajanowski T, Brinkmann B, Hohoff C. Y-STR haplotypes in populations from the Eastern Mediterranean region of Turkey. Int J Legal Med 2006;120:395-6.
  • Alakoc YD, Gokcumen O, Tug A, Gultekin T, Gulec E and Schurr TG. Y-chromosome and autosomal STR diversity in four proximate settlements in Central Anatolia. Forensic Sci Int Genet 2010;4 5 :135-7.
  • Rustamov A, Gumus G, Karabulut HG, Elhan AH, Kadikiran A and Bökesoy I. Y-STR polymorphism in Central Anatolian Region of Turkey. Forensic Sci Int 2004;139 2-3 :227-30.
  • Calafell F, Underhill P, Tolun A, Angelicheva D, Kalaydjieva L. From Asia to Europe: Mitochondrial DNA sequence variability in Bulgarians and Turks. Ann Hum Genet 1996;60 1 :35-49.
  • Comas D, Calafell F, Mateu E, Pérez-Lezaun A, Bosch E, Martínez-Arias R, Clarimon J, Facchini F, Fiori G, Luiselli D et al. Trading genes along the silk road: mtDNA sequences and the origin of central Asian populations. Am J Hum Genet 1998;63 6 :1824-38.
  • Myres NM, Ekins JE, Lin AA, Cavalli-Sforza LL, Woodward SR and Underhill PA. Y-chromosome short tandem repeat DYS458.2 non-consensus alleles occur independently in both binary haplogroups J1-M267 and R1b3-M405. Croat Med J 2007;48:450-9.
  • Mulero JJ, Chang CW, Calandro LM, Green RL, Li Y, Johnson CL, Hennessy LK. Development and validation of the AmpFlSTR Yfiler PCR amplification kit: a male specific, single amplification 17 Y-STR multiplex system. J Forensic Sci 2006;51:64-75.
Toplam 29 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Adli Biyoloji
Bölüm Araştırma Makalesi
Yazarlar

Gönül Filoğlu Bu kişi benim

Havva Altuncul Bu kişi benim

Özlem Bülbül Bu kişi benim

Elif Mertoğlu Bu kişi benim

Tolga Zorlu Bu kişi benim

Gülten Rayimoğlu Bu kişi benim

Cengiz Salih Bu kişi benim

Gönderilme Tarihi 1 Ocak 2016
Yayımlanma Tarihi 31 Aralık 2016
IZ https://izlik.org/JA89FK77XX
Yayımlandığı Sayı Yıl 2016 Cilt: 30 Sayı: 3

Kaynak Göster

Vancouver 1.Gönül Filoğlu, Havva Altuncul, Özlem Bülbül, Elif Mertoğlu, Tolga Zorlu, Gülten Rayimoğlu, Cengiz Salih. Y-kromozomu 17 STR markırının Türkiye’deki polimorfizmi. ATD [Internet]. 01 Aralık 2016;30(3):213-21. Erişim adresi: https://izlik.org/JA89FK77XX

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