Investigating the Molecular and Spectroscopic Properties of 2-chloroquinoline by Quantum Chemical Computational Methods
Yıl 2024,
, 504 - 518, 27.06.2024
Fehmi Bardak
,
Etem Kose
Öz
The current work deals with the exploration of fundamental molecular properties of 2-chloroquinoline molecule to reveal the chlorine substitution effect on the reactivity and potency of being active matter of quinoline derivatives. Accordingly, it includes a spectroscopic search for 2-chloroquinoline supported by experimental results obtained from FT-IR, FT-Raman, and 1H and 13C NMR spectra, and through quantum chemical calculations. The molecule’s optimized structure and energy parameters were obtained using the density functional theory B3LYP method 6-311++G(d,p) basis set. The vibrational characteristics of the molecule were obtained via the vibrational energy distribution analysis and in accordance with the simulated spectra obtained through molecular modeling. The 1H and 13C NMR chemical shift properties were estimated by the Gauge Invariant Atomic Orbital method and discussed in comparison with the experimental data. Moreover, molecular electrostatic potential surface characteristics, atomic partial charges, electronic orbitals, and possible electronic transitions of the compound were presented. It has been shown that chlorine substitution has significant effects on the fundamental characteristics of the compound and enhances its chemical reactivity in an important manner.
Proje Numarası
FBE-2011/070, FBE-2017/139, ve FBE-2017/148
Kaynakça
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https://doi.org/10.1080/00387010.2013.834456
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2-klorokinolinin Moleküler ve Spektroskopik Özelliklerinin Kuantum Kimyasal Hesaplama Yöntemleriyle Araştırılması
Yıl 2024,
, 504 - 518, 27.06.2024
Fehmi Bardak
,
Etem Kose
Öz
Mevcut çalışma, kinolin türevlerinin aktif madde olma potansiyeli ve reaktivitesi üzerindeki klor ikame etkisini ortaya çıkarmak için 2-klorokinolin molekülünün temel moleküler özelliklerinin araştırılmasıyla ilgilidir. Buna göre FT-IR, FT-Raman, 1H ve 13C NMR spektrumlarından elde edilen deneysel sonuçlarla ve kuantum kimyasal hesaplamalarla desteklenen 2-klorokinolin için spektroskopik bir araştırmayı içermektedir. Molekülün optimize edilmiş yapısı ve enerji parametreleri, yoğunluk fonksiyonel teorisi B3LYP yöntemi 6-311++G(d,p) temel seti kullanılarak elde edildi. Molekülün titreşim özellikleri, titreşim enerji dağılımı analizi yoluyla ve moleküler modelleme yoluyla elde edilen simüle edilmiş spektrumlara uygun olarak elde edildi. Atomik Orbitalleri İçeren Gauge Yaklaşımı yöntemiyle tahmin edilen 1H ve 13C NMR kimyasal kayma özellikleri deneysel verilerle karşılaştırıldı. Ayrıca bileşiğin moleküler elektrostatik potansiyel yüzey özellikleri, atomik kısmi yükler, elektronik yörüngeler ve olası elektronik geçişler sunuldu. Klor ikamesinin 2-klorokinolin molekülünün temel özellikleri üzerinde önemli etkileri olduğu ve kimyasal reaktivitesini önemli ölçüde arttırdığı gösterilmiştir.
Destekleyen Kurum
Manisa Celal Bayar Üniversitesi Bilimsel Araştırma Projeleri Koordinasyon Birimi, TÜBİTAK ULAKBİM, Yüksek Performans ve Grid Hesaplama Merkezi
Proje Numarası
FBE-2011/070, FBE-2017/139, ve FBE-2017/148
Teşekkür
Bu çalışma Manisa Celal Bayar Üniversitesi Bilimsel Araştırma Projeleri Koordinasyon Birimi tarafından FBE-2011/070, FBE-2017/139, ve FBE-2017/148 no’lu projelerle desteklenmiştir.
Ayrıca yapılan sayısal hesaplamalar tamamen/kısmen TÜBİTAK ULAKBİM, Yüksek Performans ve Grid Hesaplama Merkezi'nde (TRUBA kaynakları) yapılmıştır, desteklerinden dolayı teşekkür ederiz.
Kaynakça
- Arivazhagan, M., & Anitha Rexalin, D. (2012). FT-IR, FT-Raman, NMR studies and ab initio-HF, DFT-B3LYP vibrational analysis of 4-chloro-2-fluoroaniline. Spectrochimica Acta - Part A: Molecular and Biomolecular Spectroscopy, 96, 668–676.
https://doi.org/10.1016/j.saa.2012.07.040
- Arivazhagan, M., & Krishnakumar, V. (2005). Normal coordinate analysis of 1-chloroisoquinoline and 2-methyl-8-nitroquinoline. Indian Journal of Pure & Applied Physics, 43(August), 573–578.
- Arjunan, V., Mohan, S., Balamourougane, P. S., & Ravindran, P. (2009). Quantum chemical and spectroscopic investigations of 5-aminoquinoline. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 74(5), 1215–1223.
https://doi.org/10.1016/j.saa.2009.09.039
- Arjunan, V., Ravindran, P., Rani, T., & Mohan, S. (2011). FTIR, FT-Raman, FT-NMR, ab initio and DFT electronic structure investigation on 8-chloroquinoline and 8-nitroquinoline. Journal of Molecular Structure, 988(1), 91–101.
https://doi.org/10.1016/j.molstruc.2010.12.032
- Arjunan, V., Saravanan, I., Ravindran, P., & Mohan, S. (2009). Ab initio, density functional theory and structural studies of 4-amino-2-methylquinoline. Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy, 74(2), 375–384.
https://doi.org/10.1016/j.saa.2009.06.028
- Atkins, P., & de Paula, J. (2014). Atkins’ Physical Chemistry. OUP Oxford.
Balachandran, V., Boobalan, M., Amaladasan, M., & Velmathi, S. (2014). Synthesis and vibrational spectroscopic investigation of methyl l-prolinate hydrochloride: A computational insight. Spectroscopy Letters, 47(9), 676–689.
https://doi.org/10.1080/00387010.2013.834456
- Bardak, F., Karaca, C., Bilgili, S., Atac, A., Mavis, T., Asiri, A. M., Karabacak, M., & Kose, E. (2016). Conformational, electronic, and spectroscopic characterization of isophthalic acid (monomer and dimer structures) experimentally and by DFT. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 165, 33–46. https://doi.org/10.1016/j.saa.2016.03.050
- Becke, A. D. (1988). Density-functional exchange-energy approximation with correct asymptotic behavior. Physical Review A, 38(6), 3098–3100.
https://doi.org/10.1103/PhysRevA.38.3098
- Becke, A. D. (1993). Density-functional thermochemistry. III. The role of exact exchange. The Journal of Chemical Physics, 98(7), 5648–5652.
https://doi.org/10.1063/1.464913
- Davies, J. E., & Bond, A. D. (2001). Quinoline. Acta Crystallographica Section E, 57(10), 947–949.
- Deady, L. W., Desneves, J., Kaye, A., Finlay, G., Baguley, B., & Denny, W. (2001). Positioning of the carboxamide side chain in 11-oxo-11H-indeno[1,2-b]quinolinecarboxamide anticancer agents: Effects on cytotoxicity. Bioorganic and Medicinal Chemistry, 9(2), 445–452.
https://doi.org/10.1016/S0968-0896(00)00264-9
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- Ditchfield, R. (1972). Molecular Orbital Theory of Magnetic Shielding and Magnetic Susceptibility. The Journal of Chemical Physics, 56(11), 5688–5691. https://doi.org/10.1063/1.1677088
- Dubé, D., Blouin, M., Brideau, C., Chan, C. C., Desmarais, S., Ethier, D., Falgueyret, J. P., Friesen, R. W., Girard, M., Girard, Y., Guay, J., Riendeau, D., Tagari, P., & Young, R. N. (1998). Quinolines as potent 5-lipoxygenase inhibitors: Synthesis and biological profile of L-746,530. Bioorganic and Medicinal Chemistry Letters, 8(10), 1255–1260. https://doi.org/10.1016/S0960-894X(98)00201-7
- Fabian, J. (2010). TDDFT-calculations of Vis/NIR absorbing compounds. Dyes and Pigments, 84(1), 36–53. https://doi.org/10.1016/j.dyepig.2009.06.008
- Famin, O., Krugliak, M., & Ginsburg, H. (1999). Kinetics of inhibition of glutathione-mediated degradation of ferriprotoporphyrin IX by antimalarial drugs. Biochemical Pharmacology, 58(1), 59–68.
https://doi.org/10.1016/S0006-2952(99)00059-3
- Fort, P. O., Pinto, D. C. G. a, Santos, C. M. M., & Silva, A. M. S. (2007). Advanced NMR techniques for structural characterization of heterocyclic structures. In Recent Research Developments in Heterocyclic Chemistry (Vol. 661, Issue 2).
- Friebolin, H. (2005). Basic One- and Two-Dimensional NMR Spectroscopy. Wiley.
Frisch, M. J., Trucks, G. W., Schlegel, H. B., Scuseria, G. E., Robb, M. A., Cheeseman, J. R., Scalmani, G., Barone, V., Mennucci, B., Petersson, G. A., Nakatsuji, H., Caricato, M., Li, X., Hratchian, H. P., Izmaylov, A. F., Bloino, J., Zheng, G., Sonnenberg, J. L., Hada, M., … Gaussian 16 Revision A.03 (Gaussian, Inc., Wallingford CT, ). (2016). Gaussian 16 Revision A.03 (A.03). Gaussian, Inc., Wallingford, CT.
- Fujita, M., Chiba, K., Tominaga, Y., & Hino, K. (1998). 7-(2-Aminomethyl-1-azetidinyl)-4-oxoquinoline-3-carboxylic Acids as Potent Antibacterial Agents: Design, Synthesis, and Antibacterial Activity. Chemical and Pharmaceutical Bulletin, 46(5), 787–796.
https://doi.org/10.1248/cpb.46.787
- Fukui, K. (1982). Role of frontier orbitals in chemical reactions. Science (New York, N.Y.), 218(4574), 747–754. https://doi.org/10.1126/science.218.4574.747
- Guillaumont, D., & Nakamura, S. (2000). Calculation of the absorption wavelength of dyes using time-dependent density-functional theory (TD-DFT). Dyes and Pigments, 46(2), 85–92.
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