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Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes

Yıl 2018, Cilt: 18 Sayı: 1, 90 - 102, 30.04.2018

Öz

In this study, the solvent effects on structural, spectroscopic, electronic and thermochemical properties of Theobromine (tbH) were theoretically investigated. The dichloromethane (DCM), dimethylsulfoxide (DMSO) and water (H2O) solvents have been chosen for investigations. Optimized molecular structures of tbH were obtained by using the DFT/B3LYP method with 6-311++G(d,p) basis set in vacuum and in solvent media. Calculated geometric structure parameters were compared with experimental data. In the experimental section, the mid-IR spectrum of tbH was recorded using ATR equipment and compared with calculated vibrational frequencies. tbH-H2O complexes were studied for various binding ratios. The total energies and hydrogen bond lengths of these complexes were discussed in detail. It is seen as the result of this study that N⋯H-O and O⋯H-O non-covalent bonded structures are more stable for all binding versions and hydrogen bond lengths for all tbH-H2O complexes range from 1.8-2.5 Å.

Kaynakça

  • Bernal-Uruchurtu, M. I., Kerenskaya, G., Janda, K. C., 2009, International Reviews in Physical Chemistry, 28, 223-265.
  • Bilkan, M. T., 2017. Structural and spectroscopic studies on dimerization and solvent-ligand complexes of Theobromine. Journal of Molecular Liquids, 238, 523-532.
  • Brandl, M., Meyer, M., Sühnel, J. J., 2001. Quantum-Chemical Analysis of C-H…O and C-H…N Interactions in RNA Base Pairs—H-Bond Versus Anti-H-Bond Pattern. Journal of biomolecular Structure & Dynamics, 18, 4, 545-555.
  • Breda, S., Reva, I.D., Lapinski, L., Nowak, M.J., Fausto, R., 2006. Infrared spectra of pyrazine, pyrimidine andpyridazine in solid argon. Journal of Molecular Structures, 786, 193-206.
  • Calabrese, C., Gou, Q., Spada, L., Maris, A., Caminati, W., Melandri, S. 2016. Effects of Fluorine Substitution on the Microsolvation of Aromatic Azines: The Microwave Spectrum of 3-Fluoropyridine-Water. Journal of Physical Chemistry A, 120, 27, 5163-5168.
  • Cook, D., Regnier, Z. R., 1967. The infrared spectra of theobromine salts. Canadian Journal of Chemistry, 45, 2899-2902.
  • Dennington, R. D., Keith, T. A., Millam, J. M. GaussView 5, Gaussian, Inc, 2008.
  • Ford, K. A., Ebusuzaki, Y., Boyle, P. D., 1998. Methylxanthines. II. Anhydrous Theobromine. Acta Crystallographica, C54, 1980-1983.
  • Fornaro, T., Burini, D., Biczysko, M., Barone, V. 2015. Hydrogen-Bonding Effects on Infrared Spectra from Anharmonic Computations: Uracil–Water Complexes and Uracil Dimers. Journal of Physical Chemistry A, 119, 4224-4236.
  • Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery Jr., J.A., Vreven, T., Kudin, K.N., Burant, J.C., et al. 2003, Gaussian 03, revision D.01, Gaussian Inc., Wallingford, CT.
  • Jamróz, M.H., 2004, "Vibrational Energy Distribution Analysis" VEDA 4, Warsaw.
  • Kwak, K., Rosenfeld, D. E., Chung, J. K., Fayer, M. D, 2008. Solute−Solvent Complex Switching Dynamics of Chloroform between Acetone and Dimethylsulfoxide−Two-Dimensional IR Chemical Exchange Spectroscopy. Journal of Physical Chemistry B, 112, 13906-13915.
  • Miertuš, S., Scrocco, E., Tomasi, 1981. Electrostatic interaction of a solute with a continuum. A direct utilizaion of AB initio molecular potentials for the prevision of solvent effects. Journal of Chemical Physics, 55, 117-129.
  • Mikulski, C. M., Grossman, S., Lee, C. J., 2007. Hypoxanthine, xanthine and theobromine complexes with palladium(II) and platinum(IV) chlorides. Transition Metal Chemistry, 12, 21-25.
  • Mourik, T. V., Price, S. L., Clary, D. C., 1999. Ab Initio Calculations on Uracil−Water. Journal of Physical Chemistry A, 103, 1611-1618.
  • Oettl, K., Reibnegger, G., 1999. Pteridines as inhibitors of xanthine oxidase: structural requirements. Biochimica Biophysica Acta, 1430, 387.
  • Parr, R.G., Pearson, R.G., 1983. Absolute hardness: companion parameter to absolute electronegativity. Journal of American Chemical Society, 105, 7512-7516.
  • Parr, R.G., 1999. Electrophilicity Index. Journal of American Chemical Society, 121, 1922-1924.
  • Parthasarathi, R., Subramanian, V., Sathyamurthy, N., 2005. Hydrogen Bonding in Phenol, Water, and Phenol−Water Clusters. Journal of Physical Chemistry A, 109, 843-850.
  • Shahidha, R., Al-Saadi, A. A., Muthu, S., 2015. Vibrational spectroscopic studies, normal co-ordinate analysis, first order hyperpolarizability, HOMO–LUMO of midodrine by using density functional methods. Spectrochimica Acta Part A, 134, 127-142.
  • Tewari, B. B., Beaulieu-Houle, G., Larsen, A., Kengne-Momo, R., Auclair, K., Butler, I. S. 2012. An Overview of Molecular Spectroscopic Studies on Theobromine and Related Alkaloids. Applied Spectroscopy Review, 47, 163-179.
  • Ucun, F., Sağlam, A., Güçlü, V., 2007. Molecular structures and vibrational frequencies of xanthine and its methyl derivatives (caffeine and theobromine) by ab initio Hartree–Fock and density functional theory calculations. Spectrochimica Acta A, 67, 342-349.
  • Wang, Y., Liu, Q., Qui, L., Wang, T., Yuan, T., Lin, J., Luo, S., 2015. Molecular structure, IR spectra, and chemical reactivity of cisplatin and transplatin: DFT studies, basis set effect and solvent effect. Spectrochimica Acta A, 150, 902-908.
  • Yurdakul, Ş. Bilkan, M., T., 2015. Spectroscopic and structural properties of 2, 2′-dipyridylamine and its palladium and platinum complexes. Optics and Spectroscopy, 119, 4, 603-619.
Yıl 2018, Cilt: 18 Sayı: 1, 90 - 102, 30.04.2018

Öz

Kaynakça

  • Bernal-Uruchurtu, M. I., Kerenskaya, G., Janda, K. C., 2009, International Reviews in Physical Chemistry, 28, 223-265.
  • Bilkan, M. T., 2017. Structural and spectroscopic studies on dimerization and solvent-ligand complexes of Theobromine. Journal of Molecular Liquids, 238, 523-532.
  • Brandl, M., Meyer, M., Sühnel, J. J., 2001. Quantum-Chemical Analysis of C-H…O and C-H…N Interactions in RNA Base Pairs—H-Bond Versus Anti-H-Bond Pattern. Journal of biomolecular Structure & Dynamics, 18, 4, 545-555.
  • Breda, S., Reva, I.D., Lapinski, L., Nowak, M.J., Fausto, R., 2006. Infrared spectra of pyrazine, pyrimidine andpyridazine in solid argon. Journal of Molecular Structures, 786, 193-206.
  • Calabrese, C., Gou, Q., Spada, L., Maris, A., Caminati, W., Melandri, S. 2016. Effects of Fluorine Substitution on the Microsolvation of Aromatic Azines: The Microwave Spectrum of 3-Fluoropyridine-Water. Journal of Physical Chemistry A, 120, 27, 5163-5168.
  • Cook, D., Regnier, Z. R., 1967. The infrared spectra of theobromine salts. Canadian Journal of Chemistry, 45, 2899-2902.
  • Dennington, R. D., Keith, T. A., Millam, J. M. GaussView 5, Gaussian, Inc, 2008.
  • Ford, K. A., Ebusuzaki, Y., Boyle, P. D., 1998. Methylxanthines. II. Anhydrous Theobromine. Acta Crystallographica, C54, 1980-1983.
  • Fornaro, T., Burini, D., Biczysko, M., Barone, V. 2015. Hydrogen-Bonding Effects on Infrared Spectra from Anharmonic Computations: Uracil–Water Complexes and Uracil Dimers. Journal of Physical Chemistry A, 119, 4224-4236.
  • Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery Jr., J.A., Vreven, T., Kudin, K.N., Burant, J.C., et al. 2003, Gaussian 03, revision D.01, Gaussian Inc., Wallingford, CT.
  • Jamróz, M.H., 2004, "Vibrational Energy Distribution Analysis" VEDA 4, Warsaw.
  • Kwak, K., Rosenfeld, D. E., Chung, J. K., Fayer, M. D, 2008. Solute−Solvent Complex Switching Dynamics of Chloroform between Acetone and Dimethylsulfoxide−Two-Dimensional IR Chemical Exchange Spectroscopy. Journal of Physical Chemistry B, 112, 13906-13915.
  • Miertuš, S., Scrocco, E., Tomasi, 1981. Electrostatic interaction of a solute with a continuum. A direct utilizaion of AB initio molecular potentials for the prevision of solvent effects. Journal of Chemical Physics, 55, 117-129.
  • Mikulski, C. M., Grossman, S., Lee, C. J., 2007. Hypoxanthine, xanthine and theobromine complexes with palladium(II) and platinum(IV) chlorides. Transition Metal Chemistry, 12, 21-25.
  • Mourik, T. V., Price, S. L., Clary, D. C., 1999. Ab Initio Calculations on Uracil−Water. Journal of Physical Chemistry A, 103, 1611-1618.
  • Oettl, K., Reibnegger, G., 1999. Pteridines as inhibitors of xanthine oxidase: structural requirements. Biochimica Biophysica Acta, 1430, 387.
  • Parr, R.G., Pearson, R.G., 1983. Absolute hardness: companion parameter to absolute electronegativity. Journal of American Chemical Society, 105, 7512-7516.
  • Parr, R.G., 1999. Electrophilicity Index. Journal of American Chemical Society, 121, 1922-1924.
  • Parthasarathi, R., Subramanian, V., Sathyamurthy, N., 2005. Hydrogen Bonding in Phenol, Water, and Phenol−Water Clusters. Journal of Physical Chemistry A, 109, 843-850.
  • Shahidha, R., Al-Saadi, A. A., Muthu, S., 2015. Vibrational spectroscopic studies, normal co-ordinate analysis, first order hyperpolarizability, HOMO–LUMO of midodrine by using density functional methods. Spectrochimica Acta Part A, 134, 127-142.
  • Tewari, B. B., Beaulieu-Houle, G., Larsen, A., Kengne-Momo, R., Auclair, K., Butler, I. S. 2012. An Overview of Molecular Spectroscopic Studies on Theobromine and Related Alkaloids. Applied Spectroscopy Review, 47, 163-179.
  • Ucun, F., Sağlam, A., Güçlü, V., 2007. Molecular structures and vibrational frequencies of xanthine and its methyl derivatives (caffeine and theobromine) by ab initio Hartree–Fock and density functional theory calculations. Spectrochimica Acta A, 67, 342-349.
  • Wang, Y., Liu, Q., Qui, L., Wang, T., Yuan, T., Lin, J., Luo, S., 2015. Molecular structure, IR spectra, and chemical reactivity of cisplatin and transplatin: DFT studies, basis set effect and solvent effect. Spectrochimica Acta A, 150, 902-908.
  • Yurdakul, Ş. Bilkan, M., T., 2015. Spectroscopic and structural properties of 2, 2′-dipyridylamine and its palladium and platinum complexes. Optics and Spectroscopy, 119, 4, 603-619.
Toplam 24 adet kaynakça vardır.

Ayrıntılar

Birincil Dil İngilizce
Bölüm Makaleler
Yazarlar

Mustafa Tuğfan Bilkan

Yayımlanma Tarihi 30 Nisan 2018
Gönderilme Tarihi 16 Mayıs 2017
Yayımlandığı Sayı Yıl 2018 Cilt: 18 Sayı: 1

Kaynak Göster

APA Bilkan, M. T. (2018). Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi, 18(1), 90-102.
AMA Bilkan MT. Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi. Nisan 2018;18(1):90-102.
Chicago Bilkan, Mustafa Tuğfan. “Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes”. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi 18, sy. 1 (Nisan 2018): 90-102.
EndNote Bilkan MT (01 Nisan 2018) Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi 18 1 90–102.
IEEE M. T. Bilkan, “Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes”, Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi, c. 18, sy. 1, ss. 90–102, 2018.
ISNAD Bilkan, Mustafa Tuğfan. “Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes”. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi 18/1 (Nisan 2018), 90-102.
JAMA Bilkan MT. Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi. 2018;18:90–102.
MLA Bilkan, Mustafa Tuğfan. “Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes”. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi, c. 18, sy. 1, 2018, ss. 90-102.
Vancouver Bilkan MT. Experimental and Theoretical Studies on Theobromine and Theobromine-Water Complexes. Afyon Kocatepe Üniversitesi Fen Ve Mühendislik Bilimleri Dergisi. 2018;18(1):90-102.


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