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DİAGNOSTİC METHODS USED İN THE DETECTİON OF ROOT CANAL PATHOGENS

Yıl 2014, Cilt: 24 Sayı: Supplement 8, 74 - 81, 11.02.2015
https://doi.org/10.17567/dfd.44975

Öz

Nowadays, it is known that endodontic infections are polymicrobial and there are 3-12 kinds of bacteria in an infected root canal. Flare-ups, periapical destructions and persistent endodontic infections related bacteria and the identification of these bacteria are highly important and topical issues in endodontics. Microscopy, culture and antibiotic susceptibility testing, immunological and molecular biological methods have been used to detect pathogens in root canal. Today, in vitro DNA replication is provided by moleculer methods in three stages named denaturation, primer binding and extension of primers, thus millions of copies of a gene can be achieved by PCR. The aim of this review is to provide information about the methods used to determine the root canal pathogens and to introduce the molecular genetic methods. Especially, it is aimed to discuss the gene targets for microbial identification, PCR and its derivates for specific use, the advantages and disadvantages of PCR for microbial identification

Kaynakça

  • Siqueira JF Jr, Roças IN. PCR methodology as a valuable tool for identification of endodontic pathogens. J Dent 2003;31:333–9
  • Siqueira JF Jr, Roças IN. Exploiting molecular methods to explore endodontic infections: Part 1- current molecular technologies for microbiological diagnosis. J Endod 2005;31(6):411-23.
  • Fredricks DN, Relman DA. Application of polymerase chain reaction to the diagnosis of infectious diseases. Clin Infect Dis 1999;29(3):475- 86; quiz 487-8.
  • Akgün N. Mikrobiyoloji kitabı. Ed. Nuray SERTER. Eskişehir, Anadolu üniversitesi yayınları, 1996; 257-75
  • Slots J. Rapid identification of important periodontal microorganisms by cultivation. Oral Microbiol Immunol 1986;1:48-57.
  • Engelkirk PG, Duben-Engelkirk J, Dowell VR Jr. Principles and practice of clinical anaerobic bacteriology. Belmont, CA: Star Publishing Company; 1992.
  • Sixou M. Diagnostic testing as a supportive measure of treatment strategy. Oral Dis 2003;9:54-62.
  • Tang YW, Procop GW, Persing DH. Molecular diagnostics of infectious diseases. Clin Chem 1997; 43: 2021-38.
  • Zambon JJ, Haraszthy VI. The laboratory diagnosis of periodontal infections. Periodontol 2000 1995;7:69–82.
  • Baumgartner JC. Microbiological and molecular analysis of endodontic infections. Endodontic Topics 2004; 7: 35-51. W. 11. Wade Unculturable bacteria: the uncharacterized organisms that cause oral infections. J R Soc Med 2002;95:81–3.
  • Gür D. Bakteriler için kullanılan antibiyotik duyarlılık testleri. ANKEM Derg. 1999; 13 (No:3): 322-324
  • Acar JF, Goldstein FW: Disk susceptibility test, ‘’V Lorian, ed: Antibiotic in laboratory Medicine, 4. Baskı’’s.1, Williams and Wilkins, Baltimore 1996.
  • National Committee for Clinical Laboratory Standards: Antimicrobial Disk Susceptibility Test-Sixth edition; Approved Standard M2-A6. National Committee for Clinical Laboratory Standards, Villanova, Pa; 1997.
  • Baker CN, Stoker SA, Culver DH, Thornsberry CP: Comparison of E-test to agar dilution, broth microdilution, and agar diffusion susceptibility testing techniques by using a special challenge set of bacteria. J Clin Microbiol. 1991 Mar;29:533–8.
  • Khemaleelakul S, Baumgartner JC, Pruksakorn S. IdentiŞcation of bacteria in acute endodontic infections and their antimicrobial susceptibility. Oral Surg 2002: 94: 746–755.
  • Sanz M, Lau L, Herrera D ve ark. Methods of
  • Actinobacillus detection comitans, Tannerella
  • microbiology, with special emphasis on advanced
  • molecular techniques: a review. J Clin Periodontol
  • 2004;31:1034-47. actinomycetem- gingivalis in periodontal
  • Shah HN, Collins DM. Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classiŞed in the genus Bacteroides. Int J Syst Bacteriol 1990: 40: 205–8.
  • Baumgartner JC, Falkler WA Jr. Detection of immunoglobulins from explant cultures of periapical lesions. J Endod 1991: 17: 105–110
  • Pace NR. A molecular view of microbial diversity and the biosphere. Science 1997;276:734–40.
  • Hayashi H, Sakamoto M, Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture- based methods. Microbiol Immunol 2002;46:535– 48.
  • Pei Z, Bini EJ, Yang L, Zhou M, Francois F, Blaser MJ. Bacterial biota in the human distal esophagus. Proc Natl Acad Sci USA 2004;101:4250–5
  • Anderson BE, Dawson JE, Jones DC, Wilson KH. Ehrlichia chaffeensis, a new species associated with human ehrlichiosis. J Clin Microbiol 1991;29:2838–42.
  • Relman DA. The search for unrecognized pathogens. Science 1999;284:1308–10
  • Paster BJ, Boches SK, Galvin JL, ve ark. Bacterial diversity in human subgingival plaque. J Bacteriol 2001;183:3770–83.
  • Suau A, Bonnet R, Sutren M, et al. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 1999;65:4799–807.
  • Wilson KH, Blitchington RB. Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 1996;62:2273–8.
  • Sundqvist G, Figdor D. Life as an endodontic pathogen. Ecological differences between the untreated and root-filled root canals. Endod Top 2003;6:3–28
  • Baumgartner JC, Hutter JW, Siqueira JF. Endodontic Microbiology and Treatment of Infections. In: Cohen S, Hargreaves KM, ed. Pathways of the Pulp. 2. Baskı . Canada; Mosby Elsevier; 2006. 580-607.
  • Woese CR. Bacterial evolution. Microbiol Rev 1987;51:221–71.
  • Atlas RM. Principles of microbiology, 2. Baskı. Dubuque: WCB Publishers, 1997
  • Madigan MT, Martinko JM, Parker J. Brock biology of micro-organisms, 9. Baskı. Upper Saddle River, NJ; Prentice-Hall, 2000
  • Mullis KB, Ferre ´ F, Gibbs RA. The Polymerase Chain Reaction. Boston: Birkhauser, 1994.
  • Lee HC, Tirnady F. Blood Evidence. How DNA is Revolutionizing the Way We Solve Crimes. Cambridge, MA: Perseus Publishing, 2003.
  • Haqqi TM, Sarkar G, David CS, Sommer SS. Specific amplification with PCR of a refractory segment of genomic DNA. Nucleic Acids Res 1988;16:11844
  • McPherson MJ, Moller SG. PCR. Oxford, UK: BIOS Scientific Publishers Ltd, 2000;67-87.
  • Sambrook J, Russell DW. Molecular Cloning: A Laboratory Manual, 3. baskı. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 2001;8.46–8.53.
  • Dieffenbach CW, Dveksler GS. PCR Primer. A Laboratory Manual. Plain View, NY: Cold Spring Harbor Laboratory Press, 1995
  • Hayden RT. In vitro nucleic acid amplification techniques. In: Persing DH, Tenover FC, Versalovic J ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington, DC: ASM Press, 2004;43–69.
  • Belgrader P, Benett W, Hadley D, Richards J, Stratton P, Mariella R Jr, Milanovich F. PCR detection of bacteria in seven minutes. Science 1999;284:449–50.
  • Cashion AK, Driscoll CJ, Sabek O. Emerging genetic technologies in clinical and research settings. Biol Res Nurs 2004;5:159–67
  • Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res 1996;6:986– 94
  • Mhlanga MM, Malmberg L. Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 2001;25:463–71.
  • Wittwer CT, Kusukawa N. Real-time PCR. In: Persing DH, Tenover FC, Versalovic J, ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington,DC: ASM Press, 2004;71–84
  • Raoult D, Fournier PE, Drancourt M. What does the future hold for clinical microbiology? Nat Rev Microbiol 2004;2:151–9.
  • Maiwald M. Broad-range PCR for detection and identification of bacteria. In: Persing DH, Tenover FC, Versalovic J, ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington, DC: ASM Press, 2004;379–90.
  • Relman DA. Emerging infections and newly- recognised pathogens. Neth J Med 1997;50:216– 20.
  • Pitt TL, Saunders NA. Molecular bacteriology: a diagnostic tool for the millennium. J Clin Pathol 2000;53:71–5.
  • Wang R-F, Cao W-W, Cerniglia CE. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl Environ Microbiol 1996;62:1242–7
  • Rantakokko-Jalava K, Nikkari S, Jalava J, ve ark. Direct amplification of rRNA genes in diagnosis of bacterial infections. J Clin Microbiol 2000;38:32–9
  • Keer JT, Birch L. Molecular methods for the assessment of bacterial viability. J Microbiol Meth 2003;53:175–83.
  • Leduc A, Grenier D, Mayrand D. Outer membrane- deoxyribonuclease
  • Porphyromonas gingivalis. Anaerobe 1995;1:129– 34 activity of

KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ

Yıl 2014, Cilt: 24 Sayı: Supplement 8, 74 - 81, 11.02.2015
https://doi.org/10.17567/dfd.44975

Öz

Günümüzde kök kanal enfeksiyonlarının polimikrobiyal olduğu ve enfekte bir kök kanalında sayısı 3-12 arasında değişebilen bakteri türü bulunduğu bilinmektedir. Endodontide ağrılı alevlenmeler, periapikal yıkım ve inatçı enfeksiyonlar ile ilişkili spesifik bakteriler ve bu bakterilerin tanımlanması son derece önemli ve güncel konulardır. Kök kanal patojenlerinin tespit edilmesinde mikroskopi,  kültür yöntemleri ve antibiyotik duyarlılık testleri,  immünolojik ve moleküler biyolojik yöntemler kullanılmaktadır. Günümüzde moleküler yöntemlerle denatürasyon, primerin bağlanması ve uzama olarak adlandırılan üç aşama ile DNA’ nın in vitro replikasyonu sağlanmakta yani PZR (Polimeraz Zincir Reaksiyonu) ile bir genin milyonlarca kopyası elde edilebilmektedir. Bu derlemede amaç kök kanal patojenlerinin saptanmasında kullanılan yöntemler hakkında bilgi vermek ve moleküler genetik yöntemlerin tanıtılmasıdır. Özellikle mikrobiyal tanımlama için kullanılacak gen hedefleri, PZR (Polimeraz Zincir Reaksiyonu) ve spesifik kullanımlar için geliştirilen türevleri, endodontik mikrobiyal tanımlama açısından PZR kullanımının avantaj ve dezavantajlarının tartışılması hedeflenmiştir.

Kaynakça

  • Siqueira JF Jr, Roças IN. PCR methodology as a valuable tool for identification of endodontic pathogens. J Dent 2003;31:333–9
  • Siqueira JF Jr, Roças IN. Exploiting molecular methods to explore endodontic infections: Part 1- current molecular technologies for microbiological diagnosis. J Endod 2005;31(6):411-23.
  • Fredricks DN, Relman DA. Application of polymerase chain reaction to the diagnosis of infectious diseases. Clin Infect Dis 1999;29(3):475- 86; quiz 487-8.
  • Akgün N. Mikrobiyoloji kitabı. Ed. Nuray SERTER. Eskişehir, Anadolu üniversitesi yayınları, 1996; 257-75
  • Slots J. Rapid identification of important periodontal microorganisms by cultivation. Oral Microbiol Immunol 1986;1:48-57.
  • Engelkirk PG, Duben-Engelkirk J, Dowell VR Jr. Principles and practice of clinical anaerobic bacteriology. Belmont, CA: Star Publishing Company; 1992.
  • Sixou M. Diagnostic testing as a supportive measure of treatment strategy. Oral Dis 2003;9:54-62.
  • Tang YW, Procop GW, Persing DH. Molecular diagnostics of infectious diseases. Clin Chem 1997; 43: 2021-38.
  • Zambon JJ, Haraszthy VI. The laboratory diagnosis of periodontal infections. Periodontol 2000 1995;7:69–82.
  • Baumgartner JC. Microbiological and molecular analysis of endodontic infections. Endodontic Topics 2004; 7: 35-51. W. 11. Wade Unculturable bacteria: the uncharacterized organisms that cause oral infections. J R Soc Med 2002;95:81–3.
  • Gür D. Bakteriler için kullanılan antibiyotik duyarlılık testleri. ANKEM Derg. 1999; 13 (No:3): 322-324
  • Acar JF, Goldstein FW: Disk susceptibility test, ‘’V Lorian, ed: Antibiotic in laboratory Medicine, 4. Baskı’’s.1, Williams and Wilkins, Baltimore 1996.
  • National Committee for Clinical Laboratory Standards: Antimicrobial Disk Susceptibility Test-Sixth edition; Approved Standard M2-A6. National Committee for Clinical Laboratory Standards, Villanova, Pa; 1997.
  • Baker CN, Stoker SA, Culver DH, Thornsberry CP: Comparison of E-test to agar dilution, broth microdilution, and agar diffusion susceptibility testing techniques by using a special challenge set of bacteria. J Clin Microbiol. 1991 Mar;29:533–8.
  • Khemaleelakul S, Baumgartner JC, Pruksakorn S. IdentiŞcation of bacteria in acute endodontic infections and their antimicrobial susceptibility. Oral Surg 2002: 94: 746–755.
  • Sanz M, Lau L, Herrera D ve ark. Methods of
  • Actinobacillus detection comitans, Tannerella
  • microbiology, with special emphasis on advanced
  • molecular techniques: a review. J Clin Periodontol
  • 2004;31:1034-47. actinomycetem- gingivalis in periodontal
  • Shah HN, Collins DM. Prevotella, a new genus to include Bacteroides melaninogenicus and related species formerly classiŞed in the genus Bacteroides. Int J Syst Bacteriol 1990: 40: 205–8.
  • Baumgartner JC, Falkler WA Jr. Detection of immunoglobulins from explant cultures of periapical lesions. J Endod 1991: 17: 105–110
  • Pace NR. A molecular view of microbial diversity and the biosphere. Science 1997;276:734–40.
  • Hayashi H, Sakamoto M, Benno Y. Phylogenetic analysis of the human gut microbiota using 16S rDNA clone libraries and strictly anaerobic culture- based methods. Microbiol Immunol 2002;46:535– 48.
  • Pei Z, Bini EJ, Yang L, Zhou M, Francois F, Blaser MJ. Bacterial biota in the human distal esophagus. Proc Natl Acad Sci USA 2004;101:4250–5
  • Anderson BE, Dawson JE, Jones DC, Wilson KH. Ehrlichia chaffeensis, a new species associated with human ehrlichiosis. J Clin Microbiol 1991;29:2838–42.
  • Relman DA. The search for unrecognized pathogens. Science 1999;284:1308–10
  • Paster BJ, Boches SK, Galvin JL, ve ark. Bacterial diversity in human subgingival plaque. J Bacteriol 2001;183:3770–83.
  • Suau A, Bonnet R, Sutren M, et al. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 1999;65:4799–807.
  • Wilson KH, Blitchington RB. Human colonic biota studied by ribosomal DNA sequence analysis. Appl Environ Microbiol 1996;62:2273–8.
  • Sundqvist G, Figdor D. Life as an endodontic pathogen. Ecological differences between the untreated and root-filled root canals. Endod Top 2003;6:3–28
  • Baumgartner JC, Hutter JW, Siqueira JF. Endodontic Microbiology and Treatment of Infections. In: Cohen S, Hargreaves KM, ed. Pathways of the Pulp. 2. Baskı . Canada; Mosby Elsevier; 2006. 580-607.
  • Woese CR. Bacterial evolution. Microbiol Rev 1987;51:221–71.
  • Atlas RM. Principles of microbiology, 2. Baskı. Dubuque: WCB Publishers, 1997
  • Madigan MT, Martinko JM, Parker J. Brock biology of micro-organisms, 9. Baskı. Upper Saddle River, NJ; Prentice-Hall, 2000
  • Mullis KB, Ferre ´ F, Gibbs RA. The Polymerase Chain Reaction. Boston: Birkhauser, 1994.
  • Lee HC, Tirnady F. Blood Evidence. How DNA is Revolutionizing the Way We Solve Crimes. Cambridge, MA: Perseus Publishing, 2003.
  • Haqqi TM, Sarkar G, David CS, Sommer SS. Specific amplification with PCR of a refractory segment of genomic DNA. Nucleic Acids Res 1988;16:11844
  • McPherson MJ, Moller SG. PCR. Oxford, UK: BIOS Scientific Publishers Ltd, 2000;67-87.
  • Sambrook J, Russell DW. Molecular Cloning: A Laboratory Manual, 3. baskı. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 2001;8.46–8.53.
  • Dieffenbach CW, Dveksler GS. PCR Primer. A Laboratory Manual. Plain View, NY: Cold Spring Harbor Laboratory Press, 1995
  • Hayden RT. In vitro nucleic acid amplification techniques. In: Persing DH, Tenover FC, Versalovic J ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington, DC: ASM Press, 2004;43–69.
  • Belgrader P, Benett W, Hadley D, Richards J, Stratton P, Mariella R Jr, Milanovich F. PCR detection of bacteria in seven minutes. Science 1999;284:449–50.
  • Cashion AK, Driscoll CJ, Sabek O. Emerging genetic technologies in clinical and research settings. Biol Res Nurs 2004;5:159–67
  • Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res 1996;6:986– 94
  • Mhlanga MM, Malmberg L. Using molecular beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 2001;25:463–71.
  • Wittwer CT, Kusukawa N. Real-time PCR. In: Persing DH, Tenover FC, Versalovic J, ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington,DC: ASM Press, 2004;71–84
  • Raoult D, Fournier PE, Drancourt M. What does the future hold for clinical microbiology? Nat Rev Microbiol 2004;2:151–9.
  • Maiwald M. Broad-range PCR for detection and identification of bacteria. In: Persing DH, Tenover FC, Versalovic J, ve ark. ed. Molecular Microbiology. Diagnostic Principles and Practice. Washington, DC: ASM Press, 2004;379–90.
  • Relman DA. Emerging infections and newly- recognised pathogens. Neth J Med 1997;50:216– 20.
  • Pitt TL, Saunders NA. Molecular bacteriology: a diagnostic tool for the millennium. J Clin Pathol 2000;53:71–5.
  • Wang R-F, Cao W-W, Cerniglia CE. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl Environ Microbiol 1996;62:1242–7
  • Rantakokko-Jalava K, Nikkari S, Jalava J, ve ark. Direct amplification of rRNA genes in diagnosis of bacterial infections. J Clin Microbiol 2000;38:32–9
  • Keer JT, Birch L. Molecular methods for the assessment of bacterial viability. J Microbiol Meth 2003;53:175–83.
  • Leduc A, Grenier D, Mayrand D. Outer membrane- deoxyribonuclease
  • Porphyromonas gingivalis. Anaerobe 1995;1:129– 34 activity of
Toplam 56 adet kaynakça vardır.

Ayrıntılar

Birincil Dil Türkçe
Konular Diş Hekimliği
Bölüm Makaleler
Yazarlar

Emre Çiçek

Bulem Üreyen Kaya Bu kişi benim

Yayımlanma Tarihi 11 Şubat 2015
Yayımlandığı Sayı Yıl 2014 Cilt: 24 Sayı: Supplement 8

Kaynak Göster

APA Çiçek, E., & Üreyen Kaya, B. (2015). KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi, 24(Supplement 8), 74-81. https://doi.org/10.17567/dfd.44975
AMA Çiçek E, Üreyen Kaya B. KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ. Ata Diş Hek Fak Derg. Şubat 2015;24(Supplement 8):74-81. doi:10.17567/dfd.44975
Chicago Çiçek, Emre, ve Bulem Üreyen Kaya. “KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ”. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi 24, sy. Supplement 8 (Şubat 2015): 74-81. https://doi.org/10.17567/dfd.44975.
EndNote Çiçek E, Üreyen Kaya B (01 Şubat 2015) KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi 24 Supplement 8 74–81.
IEEE E. Çiçek ve B. Üreyen Kaya, “KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ”, Ata Diş Hek Fak Derg, c. 24, sy. Supplement 8, ss. 74–81, 2015, doi: 10.17567/dfd.44975.
ISNAD Çiçek, Emre - Üreyen Kaya, Bulem. “KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ”. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi 24/Supplement 8 (Şubat 2015), 74-81. https://doi.org/10.17567/dfd.44975.
JAMA Çiçek E, Üreyen Kaya B. KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ. Ata Diş Hek Fak Derg. 2015;24:74–81.
MLA Çiçek, Emre ve Bulem Üreyen Kaya. “KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ”. Atatürk Üniversitesi Diş Hekimliği Fakültesi Dergisi, c. 24, sy. Supplement 8, 2015, ss. 74-81, doi:10.17567/dfd.44975.
Vancouver Çiçek E, Üreyen Kaya B. KÖK KANAL PATOJENLERİNİN TESPİTİNDE KULLANILAN TANI YÖNTEMLERİ. Ata Diş Hek Fak Derg. 2015;24(Supplement 8):74-81.

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